PREFIX obo:
PREFIX rdf:
PREFIX rdfs:
PREFIX xsd:
obo:IAO_0020020 a rdfs:Class ;
rdfs:label "code set"@en ;
rdfs:comment "An information content entity that is a collection of other information content entities that has been created to identify or annotate things in a specified domain, and where the intention of its creators is that the collection has a one-to-one correspondence with those things."@en ;
rdfs:subClassOf obo:IAO_0000030 .
obo:BFO_0000051 a rdf:Property ;
rdfs:label "has part" ;
rdfs:comment "a core relation that holds between a whole and its part"@en ;
rdfs:range ;
rdfs:subPropertyOf obo:RO_0002131 .
obo:BFO_0000050 a rdf:Property ;
rdfs:label "part of" ;
rdfs:comment "a core relation that holds between a part and its whole"@en ;
rdfs:seeAlso , , ;
rdfs:range obo:BFO_0000002 , obo:BFO_0000004 , obo:BFO_0000017 , , obo:BFO_0000003 , obo:BFO_0000020 , obo:BFO_0000019 ;
rdfs:subPropertyOf obo:RO_0002131 .
obo:IAO_0000235 a rdf:Property ;
rdfs:label "denoted by"@en ;
rdfs:comment "inverse of the relation 'denotes'"@en ;
rdfs:domain obo:BFO_0000001 ;
rdfs:range obo:IAO_0000030 .
obo:RO_0002506 a rdf:Property ;
rdfs:label "causal relation between entities" ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000002 ;
rdfs:subPropertyOf obo:RO_0002410 .
obo:IAO_0000219 a rdf:Property ;
rdfs:label "denotes"@en ;
rdfs:comment "A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically"@en ;
rdfs:domain obo:IAO_0000030 ;
rdfs:range obo:BFO_0000001 ;
rdfs:subPropertyOf obo:IAO_0000136 .
obo:RO_0002258 a rdf:Property ;
rdfs:label "developmentally preceded by"@en ;
rdfs:comment "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000002 ;
rdfs:subPropertyOf obo:RO_0002324 .
obo:RO_0000056 a rdf:Property ;
rdfs:label "participates in"@en ;
rdfs:comment "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000003 .
obo:RO_0002566 a rdf:Property ;
rdfs:label "causally influences" ;
rdfs:comment "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size)." ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:BFO_0000002 ;
rdfs:subPropertyOf obo:RO_0002506 .
obo:IAO_0000136 a rdf:Property ;
rdfs:label "is about"@en ;
rdfs:comment "A (currently) primitive relation that relates an information artifact to an entity."@en ;
rdfs:domain obo:IAO_0000030 ;
rdfs:range .
obo:PLANA_0003716 a rdfs:Class ;
rdfs:label "dorsal region of postpharyngeal fragment" ;
rdfs:comment "The dorsal region of a fragment derived from two postpharyngeal amputations, removing the anterior region and the tail tip." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:RO_0002450 a rdf:Property ;
rdfs:label "directly positively regulates activity of" ;
rdfs:comment """The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.""" ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 ;
rdfs:subPropertyOf obo:RO_0002448 .
obo:RO_0002448 a rdf:Property ;
rdfs:label "directly regulates activity of" ;
rdfs:comment """The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.
A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.""" ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 ;
rdfs:subPropertyOf obo:RO_0011002 , obo:RO_0002436 .
obo:RO_0002487 a rdf:Property ;
rdfs:label "relation between physical entity and a process or stage" ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000003 .
obo:RO_0001018 a rdf:Property ;
rdfs:label "contained in"@en ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000004 .
obo:RO_0002202 a rdf:Property ;
rdfs:label "develops from"@en ;
rdfs:comment "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000004 ;
rdfs:subPropertyOf obo:RO_0002258 .
obo:RO_0011002 a rdf:Property ;
rdfs:label "regulates activity of" ;
rdfs:comment "The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B." ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 ;
rdfs:subPropertyOf obo:RO_0002566 .
obo:RO_0000087 a rdf:Property ;
rdfs:label "has role"@en ;
rdfs:comment "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000023 ;
rdfs:subPropertyOf obo:RO_0000053 .
obo:RO_0002215 a rdf:Property ;
rdfs:label "capable of"@en ;
rdfs:comment "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000015 ;
rdfs:subPropertyOf obo:RO_0002216 .
obo:RO_0003001 a rdf:Property ;
rdfs:label "produced by"@en ;
rdfs:comment "a produced_by b iff some process that occurs_in b has_output a." ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 .
obo:RO_0000085 a rdf:Property ;
rdfs:label "has function"@en ;
rdfs:comment "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000034 ;
rdfs:subPropertyOf obo:RO_0000053 .
obo:RO_0003000 a rdf:Property ;
rdfs:label "produces"@en ;
rdfs:comment "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 .
obo:RO_0002449 a rdf:Property ;
rdfs:label "directly negatively regulates activity of" ;
rdfs:comment """The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B.
For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.""" ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 ;
rdfs:subPropertyOf obo:RO_0002448 .
obo:RO_0002595 a rdf:Property ;
rdfs:label "causal relation between material entity and a process" ;
rdfs:comment "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000015 ;
rdfs:subPropertyOf obo:RO_0002410 .
obo:RO_0000091 a rdf:Property ;
rdfs:label "has disposition"@en ;
rdfs:comment "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000016 ;
rdfs:subPropertyOf obo:RO_0000053 .
obo:RO_0002434 a rdf:Property ;
rdfs:label "interacts with" ;
rdfs:comment "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." ;
rdfs:seeAlso ;
rdfs:domain obo:BFO_0000040 ;
rdfs:range obo:BFO_0000040 .
obo:RO_0002220 a rdf:Property ;
rdfs:label "adjacent to" ;
rdfs:comment "x adjacent to y if and only if x and y share a boundary." ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000004 ;
rdfs:subPropertyOf obo:RO_0002163 .
obo:RO_0002131 a rdf:Property ;
rdfs:label "overlaps" ;
rdfs:comment "x overlaps y if and only if there exists some z such that x has part z and z part of y" ;
rdfs:range ;
rdfs:subPropertyOf obo:RO_0002323 .
obo:BFO_0000034 a rdfs:Class ;
rdfs:label "function"@en ;
rdfs:subClassOf obo:BFO_0000016 .
obo:RO_0000079 a rdf:Property ;
rdfs:label "function of"@en ;
rdfs:comment "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en ;
rdfs:domain obo:BFO_0000034 ;
rdfs:range ;
rdfs:subPropertyOf obo:RO_0000052 .
obo:BFO_0000017 a rdfs:Class ;
rdfs:label "realizable entity"@en ;
rdfs:comment "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en ;
rdfs:subClassOf obo:BFO_0000020 .
obo:PLANA_0002037 a rdfs:Class ;
rdfs:label "extracellular matrix" ;
rdfs:comment "A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0000476 .
obo:RO_0002490 a rdf:Property ;
rdfs:label "existence overlaps" ;
rdfs:comment "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000003 ;
rdfs:subPropertyOf obo:RO_0002487 .
obo:PLANA_0000428 a rdfs:Class ;
rdfs:label "musculature system" ;
rdfs:comment "Total musculature of the planarian body." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0002048 a rdfs:Class ;
rdfs:label "inner zone of gland cells" ;
rdfs:comment "Gland or secretory cells sandwiched between muscle and epidermal layers in the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000238 a rdfs:Class ;
rdfs:label "elongate spermatid" ;
rdfs:comment "Spermatids expressing protein kinase A undergoing morphogenic changes to make mature sperm." ;
rdfs:subClassOf obo:PLANA_0000222 .
obo:PLANA_0004007 a rdfs:Class ;
rdfs:label "regenerating lateral fragment" ;
rdfs:comment "a lateral fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003607 .
obo:RO_0001000 a rdf:Property ;
rdfs:label "derives from"@en ;
rdfs:comment "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ;
rdfs:range .
obo:PLANA_0002029 a rdfs:Class ;
rdfs:label "early female germ cell" ;
rdfs:comment "A premeiotic female germ cell (i.e., a diploid female germline stem cell or transit amplifying oogonial cell)." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000229 .
obo:RO_0002496 a rdf:Property ;
rdfs:label "existence starts during or after" ;
rdfs:comment "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y)." ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000003 ;
rdfs:subPropertyOf obo:RO_0002487 .
obo:PLANA_0000111 a rdfs:Class ;
rdfs:label "proximal tubule epithelial cell" ;
rdfs:comment "Ciliated epithelial cells that assemble into proximal tubules." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 .
obo:PLANA_0002137 a rdfs:Class ;
rdfs:label "intracellular granule" ;
rdfs:comment "Cytoplasmic part which forms a distinctive granular particle, which may or may not be visible using light microscopy." ;
rdfs:subClassOf obo:PLANA_0000519 .
obo:PLANA_0003202 a rdfs:Class ;
rdfs:label "G2 phase neoblast" ;
rdfs:comment "neoblast undergoing mitotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:BFO_0000067 a rdf:Property ;
rdfs:label "contains process"@en ;
rdfs:comment "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en ;
rdfs:range .
obo:GO_0048285 a rdfs:Class ;
rdfs:label "organelle fission" ;
rdfs:comment "The creation of two or more organelles by division of one organelle." ;
rdfs:subClassOf obo:GO_0006996 .
obo:BFO_0000062 a rdf:Property ;
rdfs:label "preceded by"@en ;
rdfs:comment "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000003 ;
rdfs:subPropertyOf obo:RO_0002086 .
obo:BFO_0000063 a rdf:Property ;
rdfs:label "precedes"@en ;
rdfs:comment "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000003 ;
rdfs:subPropertyOf obo:RO_0002222 .
obo:BFO_0000066 a rdf:Property ;
rdfs:label "occurs in"@en ;
rdfs:comment "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000004 .
obo:RO_0002501 a rdf:Property ;
rdfs:label "causal relation between processes" ;
rdfs:comment "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000003 ;
rdfs:subPropertyOf obo:RO_0002410 .
obo:RO_0000057 a rdf:Property ;
rdfs:label "has participant"@en ;
rdfs:comment "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000002 .
obo:RO_0019000 a rdf:Property ;
rdfs:label "regulates characteristic" ;
rdfs:comment "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:PATO_0000001 ;
rdfs:subPropertyOf obo:RO_0002410 .
obo:RO_0002233 a rdf:Property ;
rdfs:label "has input"@en ;
rdfs:comment "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000002 ;
rdfs:subPropertyOf obo:RO_0000057 .
obo:RO_0002211 a rdf:Property ;
rdfs:label "regulates"@en ;
rdfs:comment "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
rdfs:subPropertyOf obo:RO_0002411 .
obo:RO_0002018 a rdf:Property ;
rdfs:label "has component process" ;
rdfs:comment "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
rdfs:subPropertyOf obo:RO_0002180 .
obo:RO_0002479 a rdf:Property ;
rdfs:label "has part that occurs in" ;
rdfs:comment "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000004 .
obo:RO_0002222 a rdf:Property ;
rdfs:label "temporally related to"@en ;
rdfs:comment "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." ;
rdfs:domain obo:BFO_0000003 ;
rdfs:range obo:BFO_0000003 .
obo:RO_0002334 a rdf:Property ;
rdfs:label "regulated by"@en ;
rdfs:comment "inverse of regulates" ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range obo:BFO_0000015 ;
rdfs:subPropertyOf obo:RO_0002427 .
obo:PLANA_0003705 a rdfs:Class ;
rdfs:label "ventral region of trunk fragment" ;
rdfs:comment "The ventral region of a fragment derived from pre- and post-pharyngeal amputations, encompassing the pharynx and parapharyngeal region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000531 a rdfs:Class ;
rdfs:label "non-membrane-bounded organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes." ;
rdfs:subClassOf obo:PLANA_0000525 .
obo:PLANA_0003235 a rdfs:Class ;
rdfs:label "G1 phase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:PLANA_0000057 a rdfs:Class ;
rdfs:label "obsolete embryonic cleavage" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0000556 a rdfs:Class ;
rdfs:label "neurosecretory neuron" ;
rdfs:comment "Neuronal cells which synthesize, store and release neurohormones." ;
rdfs:subClassOf obo:PLANA_0000099 , obo:PLANA_0000105 .
obo:PLANA_0000081 a rdfs:Class ;
rdfs:label "pharynx pouch" ;
rdfs:comment "An epithelial structure housing the pharynx, connected to the esophagus and mouth." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000224 a rdfs:Class ;
rdfs:label "cement gland" ;
rdfs:comment "Glands surrounding the genital atrium that are required for production of the proteinaceous egg capsule shell and stalk." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000105 a rdfs:Class ;
rdfs:label "secretory cell" ;
rdfs:comment "A cell that specializes in controlled release of one or more substances." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0002067 a rdfs:Class ;
rdfs:label "nuclear outer membrane" ;
rdfs:comment "The outer, i.e. cytoplasm-facing, lipid bilayer of the nuclear envelope; continuous with the endoplasmic reticulum of the cell and sometimes studded with ribosomes." ;
rdfs:subClassOf obo:PLANA_0000522 .
obo:GO_0051332 a rdfs:Class ;
rdfs:label "meiotic S phase" ;
rdfs:comment "The cell cycle phase, following G1, during which DNA synthesis takes place as part of a meiotic cell cycle." ;
rdfs:subClassOf obo:GO_0051320 .
obo:PLANA_0003610 a rdfs:Class ;
rdfs:label "wedge fragment" ;
rdfs:comment "A piece of tissue removed from the lateral margin at any given point that extendes interiorly to more medial structures." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:UBERON_0000465 a rdfs:Class ;
rdfs:label "material anatomical entity" ;
rdfs:comment "Anatomical entity that has mass." ;
rdfs:subClassOf obo:UBERON_0001062 .
obo:PLANA_0007511 a rdfs:Class ;
rdfs:label "extracellular organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi." ;
rdfs:subClassOf obo:PLANA_0000525 .
obo:PLANA_0000068 a rdfs:Class ;
rdfs:label "embryonic gut cavity" ;
rdfs:comment "Cavity encompassed by the embryonic digestive tract, prior to formation of the branched defintive gut." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0002553 .
obo:RO_0002497 a rdf:Property ;
rdfs:label "existence ends during or before" ;
rdfs:comment "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends." ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000003 ;
rdfs:subPropertyOf obo:RO_0002487 .
obo:PLANA_0000133 a rdfs:Class ;
rdfs:label "mechanoreceptor cell" ;
rdfs:comment "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." ;
rdfs:subClassOf obo:PLANA_0000552 .
obo:PLANA_0000417 a rdfs:Class ;
rdfs:label "definitive organism subdivision" ;
rdfs:comment "Anatomical structure which is a subdivision of a whole adult or juvenile organism, consisting of components of multiple anatomical systems." ;
rdfs:subClassOf obo:UBERON_0000475 .
obo:PLANA_0000462 a rdfs:Class ;
rdfs:label "sensory cell" ;
rdfs:comment "A cell that performs a sensory function." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0002089 a rdfs:Class ;
rdfs:label "reproductive organ" ;
rdfs:comment "An organ involved in reproduction" ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000431 .
obo:PLANA_0003111 a rdfs:Class ;
rdfs:label "pharynx epithelial cell" ;
rdfs:comment "epithelial cell which is part of the pharynx" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0003003 a rdfs:Class ;
rdfs:label "posterior region of the eye" ;
rdfs:comment "The posterior region of the eye." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002059 a rdfs:Class ;
rdfs:label "mucus" ;
rdfs:comment "A secreted, mucin-rich extracellular substance coating the epidermal surface of the animal implicated in gliding locomotion, substrate adhesion, innate immunity and predator avoidance." ;
rdfs:subClassOf obo:BFO_0000040 , obo:UBERON_0000476 .
obo:PLANA_0002003 a rdfs:Class ;
rdfs:label "amputation" ;
rdfs:comment "A wound resulting in two or more separate tissue fragments." ;
rdfs:subClassOf obo:PLANA_0002026 .
obo:PLANA_0003727 a rdfs:Class ;
rdfs:label "posterior region of posterior fragment" ;
rdfs:comment "The posterior region of a fragment encompassing all or part of the posterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003224 a rdfs:Class ;
rdfs:label "prophase spermatogonium" ;
rdfs:comment "spermatogonium undergoing mitotic prophase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:PLANA_0003303 a rdfs:Class ;
rdfs:label "pigment cup primordium" ;
rdfs:comment "This primordium develops into optic cup" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000131 .
obo:RO_0002203 a rdf:Property ;
rdfs:label "develops into"@en ;
rdfs:comment "inverse of develops from" ;
rdfs:domain obo:CARO_0000000 ;
rdfs:range obo:CARO_0000000 ;
rdfs:subPropertyOf obo:RO_0002387 , obo:RO_0002388 , obo:RO_0002286 .
obo:RO_0002254 a rdf:Property ;
rdfs:label "has developmental contribution from"@en ;
rdfs:comment "x has developmental contribution from y iff x has some part z such that z develops from y"@en ;
rdfs:domain obo:CARO_0000000 ;
rdfs:range obo:CARO_0000000 ;
rdfs:subPropertyOf obo:RO_0002258 .
obo:RO_0002384 a rdf:Property ;
rdfs:label "has developmental potential involving"@en ;
rdfs:comment "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)."@en ;
rdfs:domain obo:CARO_0000000 ;
rdfs:range obo:CARO_0000000 ;
rdfs:subPropertyOf obo:RO_0002324 .
obo:GO_0051324 a rdfs:Class ;
rdfs:label "prophase" ;
rdfs:comment "The cell cycle phase which is the first stage of M phase of meiosis and mitosis and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0002119 a rdfs:Class ;
rdfs:label "gut branch" ;
rdfs:comment "The triclad planarian gut is serially bifrucated into connected lumens where each bifrucation is a branch." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000113 .
obo:UBERON_0000476 a rdfs:Class ;
rdfs:label "acellular anatomical structure" ;
rdfs:comment "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0000107 a rdfs:Class ;
rdfs:label "yolk cell" ;
rdfs:comment "An extraembryonic cell, produced by somatic vitellogenic glands in adult hermaphrodites, that provides nutrition to the developing embryo." ;
rdfs:subClassOf obo:PLANA_0000119 , obo:PLANA_0000215 .
obo:PLANA_0000070 a rdfs:Class ;
rdfs:label "intestinal phagocyte" ;
rdfs:comment "Absorptive digestive cells that engulf food particles for intracellular digestion." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000119 .
obo:PLANA_0000503 a rdfs:Class ;
rdfs:label "obsolete cilium" ;
rdfs:comment "inadvertently duplicated, going with ID that is best annotated" .
obo:PLANA_0000122 a rdfs:Class ;
rdfs:label "gamete" ;
rdfs:comment "A mature sexual reproductive cell having a single set of unpaired chromosomes." ;
rdfs:subClassOf obo:PLANA_0000215 , obo:PLANA_0000227 .
obo:BSPO_0000056 a rdfs:Class ;
rdfs:label "posterior side" ;
rdfs:comment "An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane." ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:BSPO_0015007 a rdf:Property ;
rdfs:label "starts axis" ;
rdfs:comment "A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts axis x, and x has start point p, then x overlaps p" ;
rdfs:domain obo:BSPO_0000054 ;
rdfs:range obo:BSPO_0000010 .
obo:BSPO_0000099 a rdf:Property ;
rdfs:label "posterior to" ;
rdfs:comment "x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." ;
rdfs:seeAlso obo:FBql_00005864 , obo:FBcv_0000045 ;
rdfs:range .
obo:BSPO_0015001 a rdf:Property ;
rdfs:label "finishes axis" ;
rdfs:comment "A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes axis x, and x has end point p, then x overlaps p" ;
rdfs:domain obo:BSPO_0000054 ;
rdfs:range obo:BSPO_0000010 .
obo:PLANA_0002018 a rdfs:Class ;
rdfs:label "chemical pharynx amputation" ;
rdfs:comment "Amputation of the phaynx, including the esophagus, by treatment with Sodium Azide." ;
rdfs:subClassOf obo:PLANA_0002017 .
obo:PLANA_0003213 a rdfs:Class ;
rdfs:label "telophase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic telophase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:PLANA_0007546 a rdfs:Class ;
rdfs:label "TrpA+ neural progenitor cell" ;
rdfs:comment "piwi-1+, runt-1+, ap2+ progenitor neoblasts required for production of TrpA+ neurons." ;
rdfs:subClassOf obo:PLANA_0000012 , obo:PLANA_0000429 .
obo:PLANA_0007522 a rdfs:Class ;
rdfs:label "medial-lateral axis of the whole animal" ;
rdfs:comment "Axis that runs from the center of the body, starting at the anteroposterior axis and out to the lateral (left, right, dorsal or ventral) surface of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000086 a rdfs:Class ;
rdfs:label "anatomical compartment" ;
rdfs:comment "to be merged into CARO" ;
rdfs:subClassOf obo:CARO_0000003 .
obo:PLANA_0002078 a rdfs:Class ;
rdfs:label "point incision" ;
rdfs:comment "A breach of the epidermis made with a sharp pointed object, like a needle or an insect pin." ;
rdfs:subClassOf obo:PLANA_0002046 .
obo:BSPO_0000013 a rdfs:Class ;
rdfs:label "anterior-posterior axis" ;
rdfs:comment "An axis that extends through an organism from head end to opposite end of body or tail." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:BSPO_0015005 a rdf:Property ;
rdfs:label "orthogonal to" ;
rdfs:comment "crossing at right angles" ;
rdfs:domain obo:BSPO_0000010 ;
rdfs:range obo:BSPO_0000400 .
obo:RO_0002572 a rdf:Property ;
rdfs:label "luminal space of" ;
rdfs:comment "s is luminal space of x iff s is lumen_of x and s is an immaterial entity" ;
rdfs:domain obo:BFO_0000141 ;
rdfs:range obo:BFO_0000040 ;
rdfs:subPropertyOf obo:RO_0002571 .
obo:BSPO_0015006 a rdf:Property ;
rdfs:label "passes through" ;
rdfs:comment "Intersects at two points." ;
rdfs:domain obo:BSPO_0000010 ;
rdfs:range .
obo:BSPO_0000104 a rdf:Property ;
rdfs:label "approximately perpendicular to" ;
rdfs:comment "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." ;
rdfs:domain obo:BSPO_0000010 ;
rdfs:range obo:BSPO_0000010 .
obo:BSPO_0001001 a rdfs:Class ;
rdfs:label "medial-lateral axis" ;
rdfs:comment "An axis that extends from the center of organism to one or other side." ;
rdfs:subClassOf obo:BSPO_0000196 .
obo:PLANA_0000141 a rdfs:Class ;
rdfs:label "dorsal region of the whole animal" ;
rdfs:comment "Three dimensional compartment along the dorsoventral axis that is above the anteroposterior axis, containing the eyes." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003100 a rdfs:Class ;
rdfs:label "testis cell" ;
rdfs:comment "cell which is part of the testis" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0000401 a rdfs:Class ;
rdfs:label "obsolete immaterial anatomical entity" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0002126 a rdfs:Class ;
rdfs:label "thin fragment" ;
rdfs:comment "A longitudinal fragment lacking a midline and medial structures." ;
rdfs:subClassOf obo:PLANA_0003608 .
obo:PLANA_0002034 a rdfs:Class ;
rdfs:label "ER membrane" ;
rdfs:comment "The lipid bilayer surrounding the endoplasmic reticulum." ;
rdfs:subClassOf obo:PLANA_0000521 .
obo:PLANA_0000219 a rdfs:Class ;
rdfs:label "spermatogonial stem cell" ;
rdfs:comment "gh4+, nanos+ cells residing at the testis periphery that self-renew and give rise to differentiating daughters that will ultimately produce haploid sperm." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000121 , obo:PLANA_0000228 .
obo:GO_0032502 a rdfs:Class ;
rdfs:label "developmental process" ;
rdfs:comment "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." ;
rdfs:subClassOf obo:GO_0008150 .
obo:PLANA_0000220 a rdfs:Class ;
rdfs:label "spermatogonium" ;
rdfs:comment "An euploid male germ cell of an early stage of spermatogenesis. In planaria, the gh4+ stem cell daughter exiting the niche undergoes three rounds of transit amplifying division with incomplete cytokinesis prior to transitioning to terminal differentiation." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000120 , obo:PLANA_0000228 .
obo:PLANA_0003239 a rdfs:Class ;
rdfs:label "metaphase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic metaphase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:PLANA_0000405 a rdfs:Class ;
rdfs:label "digestive tract lumen" ;
rdfs:comment "An anatomical space that is surrounded by a digestive tract." ;
rdfs:subClassOf obo:BFO_0000141 , obo:PLANA_0002053 .
obo:PLANA_0000040 a rdfs:Class ;
rdfs:label "obsolete Schmidtea mediterranea developmental stage" ;
rdfs:comment "this term is not needed. All previous children of this term (Stage 1, Sage 2, etc) are now children of GO life cycle stage or zygote stage" .
obo:PLANA_0000487 a rdfs:Class ;
rdfs:label "acidophilic gland cell" ;
rdfs:comment "One of two distinct histochemical classes of gland cells, these can be found throughout the body but primarily form clusters of subepidermal marginal adhesive glands along the dorsoventral border of the animal." ;
rdfs:subClassOf obo:PLANA_0000485 .
obo:PLANA_0000115 a rdfs:Class ;
rdfs:label "distal tubule epithelial cell" ;
rdfs:comment "Nonciliated epithelial cells that assemble into protonephridial distal tubules." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000015 .
obo:PLANA_0000085 a rdfs:Class ;
rdfs:label "primitive gut cell" ;
rdfs:comment "A phagocytic cell closely associated with the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0004518 .
obo:PLANA_0000208 a rdfs:Class ;
rdfs:label "testis" ;
rdfs:comment "A gonad containing male germline stem cells which fuel sperm production. Testes are located dorsolaterally, and are excluded from the head. The neoblast compartment, including piwi-1+, nanos+ primordial germ cells, fuels formation of testes during juvenile development and regeneration." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000217 .
obo:PLANA_0000234 a rdfs:Class ;
rdfs:label "seminal vesicle" ;
rdfs:comment "Glandular pouches adjoining the sperm ducts which produce seminal fluid." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002089 .
obo:PLANA_0000047 a rdfs:Class ;
rdfs:label "collecting duct" ;
rdfs:comment "Non-ciliated tubules associated with the distal tubules, which cross the basement membrane and terminate in the dorsal epidermis." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000007 a rdfs:Class ;
rdfs:label "Stage 7" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 9 - 11 days post-egg capsule deposition at 20˚C. Organogenesis and organ maturation continues. Embryos elongated. Eyes just visible. Onset of gliding motility." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:PLANA_0003246 a rdfs:Class ;
rdfs:label "leptotene stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing leptotene" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0000528 a rdfs:Class ;
rdfs:label "Golgi apparatus" ;
rdfs:comment "A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions." ;
rdfs:subClassOf obo:PLANA_0000527 .
obo:PLANA_0003701 a rdfs:Class ;
rdfs:label "ventral region of head fragment" ;
rdfs:comment "The ventral region of a fragment derived from a prepharyngeal amputation encompassing the head." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0051321 a rdfs:Class ;
rdfs:label "meiotic cell cycle" ;
rdfs:comment "Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions." ;
rdfs:subClassOf obo:GO_0007049 , obo:GO_0022414 .
obo:PLANA_0002025 a rdfs:Class ;
rdfs:label "commissure" ;
rdfs:comment "A bundle of nerve fibers crossing from one side to the other side of the brain or spinal cord." ;
rdfs:subClassOf obo:PLANA_0000113 .
obo:PLANA_0002090 a rdfs:Class ;
rdfs:label "reproductive structure" ;
rdfs:comment "Any anatomical structure that is part of the reproductive system." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0000061 .
obo:PLANA_0004003 a rdfs:Class ;
rdfs:label "regenerating prepharyngeal fragment" ;
rdfs:comment "a prepharyngeal fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003603 .
obo:PLANA_0004516 a rdfs:Class ;
rdfs:label "embryonic pharynx lumen epithelial surface" ;
rdfs:comment "The epithelial cell surface lining the embryonic pharynx lumen." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:BSPO_0015008 a rdf:Property ;
rdfs:label "surface of" ;
rdfs:comment "placeholder. used for relation between anatomical surface and an anatomical side." ;
rdfs:domain obo:BSPO_0000005 ;
rdfs:range .
obo:PLANA_0002101 a rdfs:Class ;
rdfs:label "synaptic cleft" ;
rdfs:comment "The narrow gap that separates the presynaptic and postsynaptic membranes, into which neurotransmitter is released." ;
rdfs:subClassOf obo:PLANA_0002038 .
obo:PLANA_0002007 a rdfs:Class ;
rdfs:label "auricle" ;
rdfs:comment "A sense organ located along the dorsolateral head margin. The auricular groove is highly innervtated by ciliated sensory neurons, and has an altered epidermis devoid of rhabdites and gland cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:GO_0000084 a rdfs:Class ;
rdfs:label "mitotic S phase" ;
rdfs:comment "The cell cycle phase, following G1, during which DNA synthesis takes place as part of a mitotic cell cycle." ;
rdfs:subClassOf obo:GO_0051320 .
obo:PLANA_0003712 a rdfs:Class ;
rdfs:label "dorsal region of prepharyngeal fragment" ;
rdfs:comment "The dorsal region of a fragment derived from two prepharyngeal amputations, removing the head and posterior regions of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000372 a rdfs:Class ;
rdfs:label "posterior surface" ;
rdfs:comment "Anatomical surface that is located on the posterior side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0000476 a rdfs:Class ;
rdfs:label "pharynx outer longitudinal muscle cell" ;
rdfs:comment "Pharynx muscle fibers running anteroposterior which lie just underneath the apical, cilaited portion of the outer epithelium." ;
rdfs:subClassOf obo:PLANA_0000241 .
obo:BSPO_0015014 a rdf:Property ;
rdfs:label "immediately superficial to" ;
rdfs:comment "x immediately superficial to y iff x superficial to y and x is contiguous with y." ;
rdfs:seeAlso ;
rdfs:domain obo:BFO_0000004 ;
rdfs:range obo:BFO_0000004 ;
rdfs:subPropertyOf obo:RO_0002220 , obo:BSPO_0000108 .
obo:BSPO_0001107 a rdf:Property ;
rdfs:label "immediately deep to" ;
rdfs:comment "x immediately deep to y iff x deep_to y and x is contiguous with y." ;
rdfs:range ;
rdfs:subPropertyOf obo:BSPO_0000107 .
obo:PLANA_0002085 a rdfs:Class ;
rdfs:label "presynaptic vesicle" ;
rdfs:comment "A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane." ;
rdfs:subClassOf obo:PLANA_0000526 .
obo:PLANA_0007524 a rdfs:Class ;
rdfs:label "anterior pole" ;
rdfs:comment "Distinct anterior cluster of muscle cells located at the midline which express notum, follistatin, zic-1, and foxD." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:PLANA_0003228 a rdfs:Class ;
rdfs:label "G1 phase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:PLANA_0002045 a rdfs:Class ;
rdfs:label "glycogen granule" ;
rdfs:comment "Cytoplasmic bead-like structures of animal cells, visible by electron microscope. Each granule is a functional unit with the biosynthesis and catabolism of glycogen being catalyzed by enzymes bound to the granule surface." ;
rdfs:subClassOf obo:PLANA_0002137 .
obo:PLANA_0003738 a rdfs:Class ;
rdfs:label "anterior region of plug fragment" ;
rdfs:comment "The anterior region of a 3D piece of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0007502 a rdfs:Class ;
rdfs:label "obsolete coronal plane " ;
rdfs:comment "let odk import from BSPO if needed" .
obo:PLANA_0000495 a rdfs:Class ;
rdfs:label "blastema" ;
rdfs:comment "A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise." ;
rdfs:subClassOf obo:UBERON_0007567 .
obo:PLANA_0000074 a rdfs:Class ;
rdfs:label "oocyte" ;
rdfs:comment "A female germ cell that has entered meiosis." ;
rdfs:subClassOf obo:PLANA_0000122 , obo:PLANA_0000229 .
obo:PATO_0001018 a rdfs:Class ;
rdfs:label "physical quality" ;
rdfs:comment "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." ;
rdfs:subClassOf obo:PATO_0001241 .
obo:PLANA_0000130 a rdfs:Class ;
rdfs:label "circular muscle progenitor cell" ;
rdfs:comment "piwi-1+, nkx1-1+ progenitor neoblasts required for specification of circular muscle fibers." ;
rdfs:subClassOf obo:PLANA_0000019 , obo:PLANA_0000429 , obo:PLANA_0002095 .
obo:PLANA_0003257 a rdfs:Class ;
rdfs:label "meiotic anaphase II spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic anaphase II" ;
rdfs:subClassOf obo:PLANA_0000221 , obo:PLANA_0003254 .
obo:PLANA_0000036 a rdfs:Class ;
rdfs:label "eye" ;
rdfs:comment "An organ that detects light." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0002074 a rdfs:Class ;
rdfs:label "pharynx tip" ;
rdfs:comment "The distal-most end of the pharnyx containing an opening to the pharynx lumen." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000113 .
obo:PLANA_0007513 a rdfs:Class ;
rdfs:label "endoplasmic reticulum" ;
rdfs:comment "Network of interconnected, flattened, and/or tubular membrane, known as cisternae. This membrane is contiguous with the outer nuclear membrane. The endoplasmic reticulum is involved in both protein and lipid synthesis." ;
rdfs:subClassOf obo:PLANA_0000527 .
obo:PLANA_0000545 a rdfs:Class ;
rdfs:label "afferent neuron" ;
rdfs:comment "A neuron which conveys sensory information centrally from the periphery." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0002014 a rdfs:Class ;
rdfs:label "cell body" ;
rdfs:comment "The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections." ;
rdfs:subClassOf obo:GO_0005575 .
obo:PLANA_0004010 a rdfs:Class ;
rdfs:label "regenerating wedge fragment" ;
rdfs:comment "a wedge fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003610 .
obo:PLANA_0000126 a rdfs:Class ;
rdfs:label "reproductive system" ;
rdfs:comment "Anatomical system that has as its parts the organs concerned with reproduction." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0007552 a rdfs:Class ;
rdfs:label "nu neoblast" ;
rdfs:comment "A population of piwi-2+, ston-2+, elav-2+, ptprd-9+ and msi-1+ progenitors that give rise to one or more neuronal (pc-2+, synapsin+) lineages." ;
rdfs:subClassOf obo:PLANA_0000012 , obo:PLANA_0000429 .
obo:PLANA_0007544 a rdfs:Class ;
rdfs:label "cintillo+ sensory neuron" ;
rdfs:comment "A subset of sensory neurons located along the dorsal head margin." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000552 .
obo:PLANA_0002100 a rdfs:Class ;
rdfs:label "synapse" ;
rdfs:comment "The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane." ;
rdfs:subClassOf obo:PLANA_0000507 .
obo:PLANA_0000484 a rdfs:Class ;
rdfs:label "secretory system" ;
rdfs:comment "Anatomical system that has as its parts cells and glands devoted to the discharge of substances such as mucus." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0000014 a rdfs:Class ;
rdfs:label "zeta neoblast" ;
rdfs:comment "An abundant neoblast subclass consisting of p53+, zfp1+ progenitors required for maintenance and regeneration of epidermal cell type(s)." ;
rdfs:subClassOf obo:PLANA_0000033 , obo:PLANA_0000429 .
obo:GO_0140014 a rdfs:Class ;
rdfs:label "mitotic nuclear division" ;
rdfs:comment "A mitotic cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell." ;
rdfs:subClassOf obo:GO_0000280 , obo:GO_1903047 .
obo:PLANA_0000525 a rdfs:Class ;
rdfs:label "organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." ;
rdfs:subClassOf obo:GO_0005575 .
obo:CARO_0000000 a rdfs:Class ;
rdfs:label "anatomical entity" ;
rdfs:comment "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." ;
rdfs:subClassOf obo:CARO_0030000 .
obo:UBERON_0005423 a rdfs:Class ;
rdfs:label "developing anatomical structure" ;
rdfs:subClassOf obo:UBERON_0000465 .
obo:PLANA_0003700 a rdfs:Class ;
rdfs:label "dorsal region of head fragment" ;
rdfs:comment "The dorsal region of a fragment derived from a prepharyngeal amputation encompassing the head." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000430 a rdfs:Class ;
rdfs:label "epithelial cell component" ;
rdfs:comment "A part of an epithelial cell." ;
rdfs:subClassOf obo:GO_0005575 .
obo:GO_0016740 a rdfs:Class ;
rdfs:label "transferase activity" ;
rdfs:subClassOf obo:GO_0003824 .
obo:PLANA_0003252 a rdfs:Class ;
rdfs:label "meiotic anaphase I stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic anaphase I" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0000409 a rdfs:Class ;
rdfs:label "apical surface of the epidermis" ;
rdfs:comment "The apical surface of the single layered epidermis that is in contact with the environment." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000096 a rdfs:Class ;
rdfs:label "ventral epidermis" ;
rdfs:comment "Single cell layer of ventral, post-mitotic, heavily ciliated epithelial cells" ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0007568 a rdfs:Class ;
rdfs:label "guidepost cell" ;
rdfs:comment "A cell present near the brain and eye where photoreceptor axons form a bundle projecting out from the eye that are near axon choice points. Guidepost cells are positive for Arrestin, notum, fz5/8-4+, 6G10, and low levels of troponin, tropomyosin, colF-2 and mp-1." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:GO_0043473 a rdfs:Class ;
rdfs:label "pigmentation" ;
rdfs:comment "The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells." ;
rdfs:subClassOf obo:GO_0008150 .
obo:PLANA_0002052 a rdfs:Class ;
rdfs:label "lipid droplet" ;
rdfs:comment "An intracellular non-membrane-bounded organelle comprising a matrix of coalesced lipids surrounded by a phospholipid monolayer. May include associated proteins." ;
rdfs:subClassOf obo:PLANA_0000519 .
obo:PLANA_0003241 a rdfs:Class ;
rdfs:label "telophase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic telophase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:PLANA_0000003 a rdfs:Class ;
rdfs:label "Stage 3" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 2 - 4 days post-egg capsule deposition at 20˚C. Dispersed blastomere cleavage in the embryonic wall of nascent spheres. Yolk ingestion into the gut cavity." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:PLANA_0007535 a rdfs:Class ;
rdfs:label "pharynx circular muscle cell" ;
rdfs:comment "Pharynx muscle fibers running circumferentially about the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0000104 a rdfs:Class ;
rdfs:label "rhabdite" ;
rdfs:comment "Straight or curved rod-like structures within the epidermal cells, oriented with long axis at right angles to the epidermal surface, that are discharged into mucous secretions." ;
rdfs:subClassOf obo:PLANA_0000430 .
obo:PLANA_0007563 a rdfs:Class ;
rdfs:label "glutamatergic neuron" ;
rdfs:comment "Neurons that express the biogenic amine glutamate." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000556 .
obo:PLANA_0000025 a rdfs:Class ;
rdfs:label "nervous system" ;
rdfs:comment "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organisms, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0000129 a rdfs:Class ;
rdfs:label "obsolete anatomical structure" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000514 a rdfs:Class ;
rdfs:label "cytoplasmic vesicle part" ;
rdfs:comment "Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell." ;
rdfs:subClassOf obo:PLANA_0000513 .
obo:PLANA_0007506 a rdfs:Class ;
rdfs:label "obsolete anterior compartment" ;
rdfs:comment "now using patterned term anterior region" .
obo:PLANA_0000052 a rdfs:Class ;
rdfs:label "obsolete dispersed cleavage" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0002110 a rdfs:Class ;
rdfs:label "X1(FS) cell" ;
rdfs:comment "A heterogeneous sorted cell population of unstained planarian cells with similar size and complexity to irradiation-sensitive, cycling cells contained in the X1 gate. Unlike X1 cells, X1(FS) cells are amenable to cell transplantation." ;
rdfs:subClassOf obo:PLANA_0000499 , obo:PLANA_0002138 .
obo:PATO_0000052 a rdfs:Class ;
rdfs:label "shape" ;
rdfs:comment "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." ;
rdfs:subClassOf obo:PATO_0000051 .
obo:PLANA_0004527 a rdfs:Class ;
rdfs:label "copulatory region" ;
rdfs:comment "Portion of the sexual biotype body plan immediately posterior to the parapharyngeal region, and immediately anterior to the tail. Encompasses the copulatory apparatus." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:PLANA_0000490 a rdfs:Class ;
rdfs:label "obsolete anatomical plane" ;
rdfs:comment "replacing with BSPO term" .
obo:GO_0000279 a rdfs:Class ;
rdfs:label "M phase" ;
rdfs:comment "A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0004512 a rdfs:Class ;
rdfs:label "primitive ectoderm surface" ;
rdfs:comment "The apical surface of the single layered primitive ectoderm that is in contact with the environment." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0002140 a rdfs:Class ;
rdfs:label "pharynx pouch epithelium" ;
rdfs:comment "An epithelial monolayer lining the pharynx pouch cavity." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002118 .
obo:PLANA_0000539 a rdfs:Class ;
rdfs:label "electrically responsive cell" ;
rdfs:comment "A cell whose function is determined by its response to an electric signal." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0003108 a rdfs:Class ;
rdfs:label "gastrodermal cell" ;
rdfs:comment "cell which is part of the gastrodermis" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0000060 a rdfs:Class ;
rdfs:label "embryonic wall" ;
rdfs:comment "The parenchymal space between the gut cavity and the primitive ectoderm containing undifferentiated blastomeres in Stage 3-5 embryos." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000423 .
obo:BSPO_0000058 a rdfs:Class ;
rdfs:label "basal side" ;
rdfs:comment "Anatomical side that is located on the basal end of an organism or structure." ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:GO_0000080 a rdfs:Class ;
rdfs:label "mitotic G1 phase" ;
rdfs:comment "The cell cycle 'gap' phase which is the interval between the completion of DNA segregation by mitosis and the beginning of DNA synthesis." ;
rdfs:subClassOf obo:GO_0051318 .
obo:PLANA_0002104 a rdfs:Class ;
rdfs:label "tail tip" ;
rdfs:comment "The posterior-medial region of the tail margin." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:GO_0000280 a rdfs:Class ;
rdfs:label "nuclear division" ;
rdfs:comment "The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei." ;
rdfs:subClassOf obo:GO_0048285 .
obo:GO_0000241 a rdfs:Class ;
rdfs:label "diakinesis" ;
rdfs:comment "The cell cycle phase which follows diplotene during prophase I of meiosis, the separation of homologous chromosomes is complete and crossing over has occurred." ;
rdfs:subClassOf obo:GO_0098764 .
obo:RO_0002092 a rdf:Property ;
rdfs:label "happens during" ;
rdfs:range ;
rdfs:subPropertyOf obo:RO_0002093 .
obo:BSPO_0000026 a rdfs:Class ;
rdfs:label "antero-dorsal region" ;
rdfs:comment "Anatomical region that overlaps the anterior and dorsal regions of a body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000071 , obo:BSPO_0000079 .
obo:PLANA_0000416 a rdfs:Class ;
rdfs:label "obsolete organism subdivision" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0002041 a rdfs:Class ;
rdfs:label "gap junction" ;
rdfs:comment "A cell-cell junction composed of pannexins or innexins and connexins, two different families of channel-forming proteins." ;
rdfs:subClassOf obo:PLANA_0000507 .
obo:PLANA_0002030 a rdfs:Class ;
rdfs:label "early male germ cell" ;
rdfs:comment "A premeiotic male germ cell (i.e., a spermatogonial stem cell or transit amplifying spermatogonial cell)." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000228 .
obo:PLANA_0007557 a rdfs:Class ;
rdfs:label "testis nerve plexus" ;
rdfs:comment "Nerve plexus surrounding the testis." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000492 .
obo:PLANA_0000063 a rdfs:Class ;
rdfs:label "extraembryonic structure" ;
rdfs:comment "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." ;
rdfs:subClassOf obo:UBERON_0005423 .
obo:PLANA_0003609 a rdfs:Class ;
rdfs:label "plug fragment" ;
rdfs:comment "A 3D piece of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:UBERON_0002553 a rdfs:Class ;
rdfs:label "anatomical cavity" ;
rdfs:comment "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." ;
rdfs:subClassOf obo:UBERON_0001062 .
obo:GO_0007133 a rdfs:Class ;
rdfs:label "meiotic anaphase I" ;
rdfs:comment "The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of meiosis I." ;
rdfs:subClassOf obo:GO_0051322 , obo:GO_0098764 .
obo:PLANA_0000498 a rdfs:Class ;
rdfs:label "obsolete main body axis" ;
rdfs:comment "replacing duplicate PLANA term" .
obo:PLANA_0003105 a rdfs:Class ;
rdfs:label "dorsal epidermis cell" ;
rdfs:comment "cell which is part of the dorsal region of the epidermis" .
obo:PLANA_0002063 a rdfs:Class ;
rdfs:label "non-ciliated epidermis" ;
rdfs:comment "Differentiating, immature epidermal cells lacking cilia." ;
rdfs:subClassOf obo:PLANA_0000034 .
obo:IAO_0020010 a rdfs:Class ;
rdfs:label "identifier creating process"@en ;
rdfs:comment "A planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity."@en ;
rdfs:subClassOf obo:OBI_0000011 .
obo:OBI_0000299 a rdf:Property ;
rdfs:label "has_specified_output"@en ;
rdfs:comment "The inverse property of is_specified_output_of"@en ;
rdfs:domain obo:OBI_0000011 ;
rdfs:range obo:BFO_0000002 ;
rdfs:subPropertyOf obo:RO_0000057 .
obo:PLANA_0002096 a rdfs:Class ;
rdfs:label "somatic gonadal cell" ;
rdfs:comment "A non-germline cell within the ovary or testis." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000119 .
obo:PLANA_0000018 a rdfs:Class ;
rdfs:label "Category 4 cell" ;
rdfs:comment "Post-mitotic, mesenchymally and epidermally located progenitors downstream of the Category 3 cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000015 , obo:PLANA_0000033 , obo:PLANA_0002032 .
obo:PLANA_0007555 a rdfs:Class ;
rdfs:label "pax3/7+ neural progenitor cell" ;
rdfs:comment "piwi-1+, pax3/7+ progenitor neoblasts implicated in the production of DBH+ ventral midline neurons." ;
rdfs:subClassOf obo:PLANA_0000012 , obo:PLANA_0000429 .
obo:PLANA_0003002 a rdfs:Class ;
rdfs:label "anterior region of the eye" ;
rdfs:comment "The anterior region of the eye." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000071 a rdfs:Class ;
rdfs:label "anterior region" ;
rdfs:comment "Anatomical region anteriorly located on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0002020 a rdfs:Class ;
rdfs:label "chromatoid body" ;
rdfs:comment "A membrane-less, cytoplasmic ribonucleoprotein granule present in neoblasts and germ cells implicated in post-transcriptional regulation. The RNA helicase DHH1/RCK, Tudor, SmB, methylated substrates of PRMT5, PIWI-3 and Germinal Histone H4 localize to chromatoid bodies in neoblasts." ;
rdfs:subClassOf obo:PLANA_0000531 .
obo:PLANA_0000423 a rdfs:Class ;
rdfs:label "embryonic subdivision" ;
rdfs:comment "Anatomical structure which is a subdivision of a whole developing/ embryonic organism, consisting of components of multiple anatomical systems." ;
rdfs:subClassOf obo:UBERON_0000475 .
obo:PLANA_0000101 a rdfs:Class ;
rdfs:label "muscle cell" ;
rdfs:comment "A mature contractile cell, commonly known as a myocyte. This cell has as part of its cytoplasm myofibrils organized in various patterns." ;
rdfs:subClassOf obo:PLANA_0000539 .
obo:BSPO_0000417 a rdfs:Class ;
rdfs:label "sagittal plane" ;
rdfs:comment "Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size." ;
rdfs:subClassOf obo:BSPO_0000010 , obo:BSPO_0000400 .
obo:BSPO_0001102 a rdf:Property ;
rdfs:label "parallel to" ;
rdfs:comment "x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross." ;
rdfs:range .
obo:UBERON_0001062 a rdfs:Class ;
rdfs:label "anatomical entity" ;
rdfs:comment "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." .
obo:PLANA_0004520 a rdfs:Class ;
rdfs:label "embryonic pharynx radial muscle cell" ;
rdfs:comment "Differentiated radial muscle cell present in the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 , obo:PLANA_0004518 .
obo:PATO_0001241 a rdfs:Class ;
rdfs:label "physical object quality" ;
rdfs:comment "A quality which inheres in a continuant." ;
rdfs:subClassOf obo:PATO_0000001 .
obo:PLANA_0002056 a rdfs:Class ;
rdfs:label "medial muscle cell" ;
rdfs:comment "Subset of dorsal-ventral muscle cells located in the medial body region." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0002132 a rdfs:Class ;
rdfs:label "wedge wound" ;
rdfs:comment "A wound resulting from the removal of a piece of tissue from the lateral margin at any given point that extends interiorly to more medial structures." ;
rdfs:subClassOf obo:PLANA_0002108 .
obo:PLANA_0003603 a rdfs:Class ;
rdfs:label "prepharyngeal fragment" ;
rdfs:comment "A fragment derived from two prepharyngeal amputations, removing the head and posterior regions of the animal." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0000092 a rdfs:Class ;
rdfs:label "yolk syncytium" ;
rdfs:comment "Fused yolk cells surrounding blastomeres undergoing dispersed cleavage during Stages 1 and 2." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002136 .
obo:PLANA_0000520 a rdfs:Class ;
rdfs:label "membrane" ;
rdfs:comment "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." ;
rdfs:subClassOf obo:GO_0005575 .
obo:PLANA_0003206 a rdfs:Class ;
rdfs:label "telophase neoblast" ;
rdfs:comment "neoblast undergoing mitotic telophase" ;
rdfs:subClassOf obo:PLANA_0000429 .
a rdfs:Class .
obo:PLANA_0000079 a rdfs:Class ;
rdfs:label "parenchymal musculature" ;
rdfs:comment "Muscles that are present through the mesenchyme, inclusing dorsal-ventral muscles, intestinal muscles and pharynx muscles." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0000203 a rdfs:Class ;
rdfs:label "gonopore" ;
rdfs:comment "The gonopore, a component of the copulatory apparatus, is an opening located on the ventral side of the animal posterior to the pharynx. The gonopore is the sole point of exit and entry for the reproductive system, allowing from reciprocal exchange of sperm during copulation and egg capsule laying." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002079 .
obo:PLANA_0000029 a rdfs:Class ;
rdfs:label "primitive ectoderm" ;
rdfs:comment "A single cell layer of extraembryonic, post-mitotic ectodermal cells bounding the embryo. The primitive ectoderm forms during Stage 2 and is thought to degenerate as the definitive epidermis forms during Stages 5-7." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002120 .
obo:PLANA_0007541 a rdfs:Class ;
rdfs:label "releasing gland cell" ;
rdfs:comment "Specialized insunk epithelial cell that is part of the adhesion gland which is responsible for production of releasing substance." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000487 .
obo:PLANA_0003116 a rdfs:Class ;
rdfs:label "parenchymal cell" ;
rdfs:comment "cell which is part of the parenchyma" .
obo:PLANA_0000137 a rdfs:Class ;
rdfs:label "regeneration" ;
rdfs:comment "The regrowth of a lost or destroyed body part, such as an organ or tissue. This process may occur via renewal, repair, and/or growth alone (i.e. increase in size or mass)." ;
rdfs:subClassOf obo:GO_0048856 .
obo:PLANA_0000216 a rdfs:Class ;
rdfs:label "egg capsule" ;
rdfs:comment "A proteinaceous, semi-permeable shell housing yolk cells and one or more embryos.Egg capsules are anchored to a substrate via a stalk." ;
rdfs:subClassOf obo:PLANA_0000215 .
obo:PLANA_0003230 a rdfs:Class ;
rdfs:label "G2 phase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:BSPO_0000082 a rdfs:Class ;
rdfs:label "lateral region" ;
rdfs:comment "Anatomical region laterally located on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0007566 a rdfs:Class ;
rdfs:label "non-ciliated neuron" ;
rdfs:comment "A neuron cell that does not have cilia." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:IAO_0000028 a rdfs:Class ;
rdfs:label "symbol"@en ;
rdfs:comment "An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity."@en ;
rdfs:subClassOf obo:IAO_0000030 .
obo:PLANA_0003501 a rdfs:Class ;
rdfs:label "dorsal epidermis progenitor cell" ;
rdfs:comment "A progenitor cell that gives rise to one or more of the cell type(s) in the dorsal epidermis." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:PLANA_0003722 a rdfs:Class ;
rdfs:label "anterior region of anterior fragment" ;
rdfs:comment "The anterior region of a fragment encompassing all or part of the anterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002109 a rdfs:Class ;
rdfs:label "X1 cell" ;
rdfs:comment "A sorted cell population enriched for irradiation-sensitive, cycling cells (4n cells, with high levels of Hoescht 33342 staining) with scant cytoplasm (low levels of calcein-AM staining). X1 cells are enriched for cycling neoblasts." ;
rdfs:subClassOf obo:PLANA_0000499 , obo:PLANA_0002138 .
obo:BFO_0000141 a rdfs:Class ;
rdfs:label "immaterial entity"@en ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0000466 a rdfs:Class ;
rdfs:label "subepidermal nerve plexus" ;
rdfs:comment "Plexus of nerves located just between the epidermis and the body wall musculature." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000492 .
obo:PLANA_0003733 a rdfs:Class ;
rdfs:label "ventral region of longitudinal fragment" ;
rdfs:comment "The ventral region of a fragment derived from an amputation parallel to the midline." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000118 a rdfs:Class ;
rdfs:label "collecting duct epithelial cell" ;
rdfs:comment "Nonciliated epithelial cells that assemble into collecting ducts." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000015 .
obo:PLANA_0000504 a rdfs:Class ;
rdfs:label "microvillus" ;
rdfs:comment "Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments." ;
rdfs:subClassOf obo:PLANA_0000502 .
obo:PLANA_0000412 a rdfs:Class ;
rdfs:label "pharynx inner epithelium surface" ;
rdfs:comment "The epithelial surface lining the interior of the pharynx, facing the lumen." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0003004 a rdfs:Class ;
rdfs:label "prepharyngeal midline" ;
rdfs:comment "The center-most region just anterior to the pharynx" ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000507 a rdfs:Class ;
rdfs:label "cell-cell junction" ;
rdfs:comment "A cell junction that forms a connection between two or more cells in a multicellular organism; this excludes direct cytoplasmic junctions such as ring canals." ;
rdfs:subClassOf obo:PLANA_0000506 .
obo:PLANA_0002108 a rdfs:Class ;
rdfs:label "wound" ;
rdfs:comment "An injury that breaches the epidermis." ;
rdfs:subClassOf obo:PLANA_0002122 .
obo:PLANA_0003217 a rdfs:Class ;
rdfs:label "prophase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic prophase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:BFO_0000040 a rdfs:Class ;
rdfs:label "material entity"@en ;
rdfs:comment "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en ;
rdfs:subClassOf obo:BFO_0000004 .
obo:GO_0098764 a rdfs:Class ;
rdfs:label "meiosis I cell cycle phase" ;
rdfs:comment "A meiotic cell cycle phase prior to a during which some part of meiosis I nuclear division or the proceeding cytokinesis occurs." ;
rdfs:subClassOf obo:GO_0098762 .
obo:PLANA_0007512 a rdfs:Class ;
rdfs:label "mitochondrion" ;
rdfs:comment "A spherical to rod shaped organelle that generates the majority of a cell's supply of ATP via cellular respiration. Mitochondria have their own genome and consist of outer and inner membranes, the latter folds inward to form cristae. This folding increases the surface area of the membrane and thus increases the space available to produce ATP. The inner and outer membranes are separated by an intermembrane space, and the inner membrane encloses the matrix." ;
rdfs:subClassOf obo:PLANA_0000527 .
obo:PLANA_0000561 a rdfs:Class ;
rdfs:label "neuron associated cell (sensu Nematoda and Protostomia)" ;
rdfs:comment "Cells that are in close proximity to neurons." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0000229 a rdfs:Class ;
rdfs:label "female germ cell" ;
rdfs:comment "Female germ cell is a germ cell that supports female gamete production." ;
rdfs:subClassOf obo:PLANA_0000227 .
obo:PLANA_0003721 a rdfs:Class ;
rdfs:label "ventral region of anterior fragment" ;
rdfs:comment "The ventral region of a fragment encompassing all or part of the anterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003739 a rdfs:Class ;
rdfs:label "posterior region of plug fragment" ;
rdfs:comment "The posterior region of a 3D piece of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:CARO_0000008 a rdfs:Class ;
rdfs:label "anatomical line" ;
rdfs:comment "A one dimensional, immaterial anatomical entity." ;
rdfs:subClassOf obo:CARO_0000007 .
obo:PLANA_0004534 a rdfs:Class ;
rdfs:label "tuba lumen" ;
rdfs:comment "Anatomical space enclosed by tuba. Oocyte(s) are fertilized in the tuba lumen by sperm that traveled up the oviduct." ;
rdfs:subClassOf obo:BFO_0000141 , obo:PLANA_0002053 .
obo:PATO_0000133 a rdfs:Class ;
rdfs:label "orientation" ;
rdfs:comment "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." ;
rdfs:subClassOf obo:PATO_0000140 .
obo:PLANA_0002038 a rdfs:Class ;
rdfs:label "extracellular space" ;
rdfs:comment "That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid." ;
rdfs:subClassOf obo:UBERON_0000476 .
obo:GO_0016772 a rdfs:Class ;
rdfs:label "transferase activity, transferring phosphorus-containing groups" ;
rdfs:subClassOf obo:GO_0016740 .
obo:BSPO_0000371 a rdfs:Class ;
rdfs:label "anterior surface" ;
rdfs:comment "Anatomical surface that is located on the anterior side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0002017 a rdfs:Class ;
rdfs:label "chemical amputation" ;
rdfs:comment "Amputation carried out by application of chemicals." ;
rdfs:subClassOf obo:PLANA_0002108 .
obo:PLANA_0000550 a rdfs:Class ;
rdfs:label "interneuron" ;
rdfs:comment "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0002107 a rdfs:Class ;
rdfs:label "wedge amputation" ;
rdfs:comment "A wound resulting from a piece of tissue removed from the lateral margin at any given point that extendes interiorly to more medial structures." ;
rdfs:subClassOf obo:PLANA_0002003 .
obo:PLANA_0007523 a rdfs:Class ;
rdfs:label "proximal-distal axis of the whole animal" ;
rdfs:comment "Axis that starts at the distal part of an appendage, closest to the body, and runs to the proximal part of an appendage, farthest from the body." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000116 a rdfs:Class ;
rdfs:label "embryo" ;
rdfs:comment "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." ;
rdfs:subClassOf obo:PLANA_0000136 , obo:PLANA_0000215 .
obo:PLANA_0002077 a rdfs:Class ;
rdfs:label "plug amputation" ;
rdfs:comment "A wound resulting from an amputation of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:PLANA_0002003 .
obo:IAO_0000577 a rdfs:Class ;
rdfs:label "centrally registered identifier symbol"@en ;
rdfs:comment "A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry."@en ;
rdfs:subClassOf obo:IAO_0000028 .
obo:PLANA_0002136 a rdfs:Class ;
rdfs:label "syncytium" ;
rdfs:comment "An anatomical entity consisting of a single or a few multinucleated structures" ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0003249 a rdfs:Class ;
rdfs:label "diplotene stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing diplotene" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0000127 a rdfs:Class ;
rdfs:label "oviduct epithelial cell" ;
rdfs:comment "Ciliated epithelial cells that assemble into the oviduct." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 .
obo:PLANA_0003502 a rdfs:Class ;
rdfs:label "optic cup progenitor cell" ;
rdfs:comment "A progenitor cell that gives rise to optic cup cells of the eye." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:PLANA_0003101 a rdfs:Class ;
rdfs:label "ventral epidermis cell" ;
rdfs:comment "cell which is part of the ventral epidermis" .
obo:GO_0098765 a rdfs:Class ;
rdfs:label "meiosis II cell cycle phase" ;
rdfs:comment "A meiotic cell cycle phase that occurs after meiosis I (the first meiotic nuclear division)." ;
rdfs:subClassOf obo:GO_0098762 .
obo:PLANA_0004531 a rdfs:Class ;
rdfs:label "sperm duct lumen" ;
rdfs:comment "Anatomical space enclosed by the sperm duct epithelium." ;
rdfs:subClassOf obo:BFO_0000141 , obo:PLANA_0002053 .
obo:PLANA_0000218 a rdfs:Class ;
rdfs:label "male primordial germ cell" ;
rdfs:comment "Cells coexpressing piwi-1 and nanos that are required for male gonad formation. Primordial germ cells are present in both asexual adults and sexual hermaphrodites. This term may be redundant with spermatogonial stem cell." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000121 , obo:PLANA_0000228 .
obo:PLANA_0007505 a rdfs:Class ;
rdfs:label "obsolete ventral compartment" ;
rdfs:comment "now using patterned term ventral region PLANA:0000143" .
obo:PLANA_0002088 a rdfs:Class ;
rdfs:label "quarternary gut branch" ;
rdfs:comment "Gut branches originating from and connected to the tertiary gut branches." ;
rdfs:subClassOf obo:PLANA_0002119 .
obo:BSPO_0000054 a rdfs:Class ;
rdfs:label "anatomical side" ;
rdfs:comment "An anatomical region bounded by a plane perpendicular to an axis through the middle." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0003900 a rdfs:Class ;
rdfs:label "head blastema" ;
rdfs:comment "blastema which develops into head region" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000495 .
obo:PLANA_0002049 a rdfs:Class ;
rdfs:label "intercellular junction" ;
rdfs:comment "A cell junction that forms a connection between two or more cells in a multicellular organism." ;
rdfs:subClassOf obo:PLANA_0000507 .
obo:BSPO_0000382 a rdfs:Class ;
rdfs:label "lateral surface" ;
rdfs:comment "Anatomical surface that located on the lateral side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0000533 a rdfs:Class ;
rdfs:label "nucleolus" ;
rdfs:comment "A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome." ;
rdfs:subClassOf obo:PLANA_0000532 .
obo:PLANA_0003400 a rdfs:Class ;
rdfs:label "protonephridial lumen" ;
rdfs:comment "lumen which is part of the protonephridia" ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002053 .
obo:PLANA_0000075 a rdfs:Class ;
rdfs:label "optic cup" ;
rdfs:comment "A portion of the eye containing pigment cells and dendritic projections from photoreceptor neurons." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0003234 a rdfs:Class ;
rdfs:label "telophase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic telophase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:PLANA_0002099 a rdfs:Class ;
rdfs:label "surgical wound" ;
rdfs:comment "A wound produced by non-autonomous physical means." ;
rdfs:subClassOf obo:PLANA_0002108 .
obo:PLANA_0003718 a rdfs:Class ;
rdfs:label "anterior region of postpharyngeal fragment" ;
rdfs:comment "The anterior region of a fragment derived from two postpharyngeal amputations, removing the anterior region and the tail tip." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0048856 a rdfs:Class ;
rdfs:label "anatomical structure development" ;
rdfs:comment "The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." ;
rdfs:subClassOf obo:GO_0032502 .
obo:PLANA_0003732 a rdfs:Class ;
rdfs:label "dorsal region of longitudinal fragment" ;
rdfs:comment "The dorsal region of a fragment derived from an amputation parallel to the midline." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003112 a rdfs:Class ;
rdfs:label "pharynx muscle cell" ;
rdfs:comment "muscle cell which is part of the pharynx" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:CARO_0030000 a rdfs:Class ;
rdfs:label "biological entity" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0003227 a rdfs:Class ;
rdfs:label "telophase spermatogonium" ;
rdfs:comment "spermatogonium undergoing mitotic telophase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:PLANA_0003728 a rdfs:Class ;
rdfs:label "dorsal region of lateral fragment" ;
rdfs:comment "The dorsal region of a fragment derived from an amputation parallel to or along any edge, which overlaps the lateral region, dorso-lateral region, ventro-lateral region, antero-lateral margin, lateral margin, ventro-lateral margin, postero-lateral margin, dorso-lateral margin, antero-lateral region, postero-lateral region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0000088 a rdfs:Class ;
rdfs:label "mitotic prophase" ;
rdfs:comment "The cell cycle phase which is the first stage of M phase of mitosis and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell." ;
rdfs:subClassOf obo:GO_0051324 .
obo:PLANA_0002125 a rdfs:Class ;
rdfs:label "thick fragment" ;
rdfs:comment "A longitudinal fragment containing the preexisting midline and medial structures." ;
rdfs:subClassOf obo:PLANA_0003608 .
obo:PLANA_0003000 a rdfs:Class ;
rdfs:label "dorsal region of tail" ;
rdfs:comment "The dorsal region of the tail." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000092 a rdfs:Class ;
rdfs:label "anatomical compartment boundary" ;
rdfs:comment "to be merged into CARO" ;
rdfs:subClassOf obo:CARO_0000010 .
obo:BFO_0000023 a rdfs:Class ;
rdfs:label "role"@en ;
rdfs:comment "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en ;
rdfs:subClassOf obo:BFO_0000017 .
obo:PLANA_0000463 a rdfs:Class ;
rdfs:label "cholinergic neuron" ;
rdfs:comment "Neurons that express choline acetyltransferase." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000556 .
obo:GO_0000087 a rdfs:Class ;
rdfs:label "mitotic M phase" ;
rdfs:comment "A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase and occurs as part of a mitotic cell cycle." ;
rdfs:subClassOf obo:GO_0000279 , obo:GO_0098763 .
obo:PLANA_0000406 a rdfs:Class ;
rdfs:label "oral opening" ;
rdfs:comment "The orifice that connects the mouth to the exterior of the body." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0002553 .
obo:PLANA_0000499 a rdfs:Class ;
rdfs:label "cell" ;
rdfs:comment "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0000541 a rdfs:Class ;
rdfs:label "nerve" ;
rdfs:comment "An enclosed, cable-like bundle of axons in the peripheral nervous system originating in a nerve root in the central nervous system (or a condensed nervous structure) connecting with peripheral structures." ;
rdfs:subClassOf obo:PLANA_0000113 .
obo:PLANA_0002118 a rdfs:Class ;
rdfs:label "epithelium" ;
rdfs:comment "The avascular cellular layers that cover body surfaces and cavities and may form glands." ;
rdfs:subClassOf obo:PLANA_0000113 .
obo:PLANA_0000502 a rdfs:Class ;
rdfs:label "actin-based cell projection" ;
rdfs:comment "A cell projection supported by an assembly of actin filaments." ;
rdfs:subClassOf obo:PLANA_0000501 .
obo:PLANA_0000473 a rdfs:Class ;
rdfs:label "pharynx outer circular muscle cell" ;
rdfs:comment "Pharynx muscle fibers thar run circumferentially about the pharynx and lie just beneath the outer longitudinal pharynx muscles." ;
rdfs:subClassOf obo:PLANA_0007535 .
obo:PLANA_0000123 a rdfs:Class ;
rdfs:label "embryonic cell" ;
rdfs:comment "A cell of the embryo." ;
rdfs:subClassOf obo:PLANA_0000499 .
obo:UBERON_0000105 a rdfs:Class ;
rdfs:label "life cycle stage" ;
rdfs:comment "A spatiotemporal region encompassing some part of the life cycle of an organism." .
obo:PLANA_0002028 a rdfs:Class ;
rdfs:label "dorsal-ventral muscle cell" ;
rdfs:comment "A muscle cell that runs in the transverse plane that connects the dorsal and ventral sides of the animal." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0004528 a rdfs:Class ;
rdfs:label "pharynx epithelium" ;
rdfs:comment "Epithelia associated with the pharynx organ." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002118 .
obo:PLANA_0000512 a rdfs:Class ;
rdfs:label "obsolete basophilic cytoplasm" ;
rdfs:comment "term is not needed." .
obo:PLANA_0000225 a rdfs:Class ;
rdfs:label "obsolete oviparity" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0002044 a rdfs:Class ;
rdfs:label "germline stem cell" ;
rdfs:comment "Stem cell that is the precursor of gametes." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000121 .
obo:PLANA_0000093 a rdfs:Class ;
rdfs:label "tertiary gut branch" ;
rdfs:comment "Gut branches originating from and connected to the secondary gut branches." ;
rdfs:subClassOf obo:PLANA_0002119 .
obo:PLANA_0000033 a rdfs:Class ;
rdfs:label "epidermal progenitor cell" ;
rdfs:comment "Mitotically active zeta neoblasts and their post-mitotic descendants which undergo progressive differentiation and outward directed movement through the mesenchyme prior to incorporation into the epidermis, where terminal differentiation occurs." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:PLANA_0000523 a rdfs:Class ;
rdfs:label "plasma membrane part" ;
rdfs:comment "Any constituent part of the plasma membrane, the membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." ;
rdfs:subClassOf obo:PLANA_0000522 .
obo:GO_0008150 a rdfs:Class ;
rdfs:label "biological_process" ;
rdfs:comment "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." ;
rdfs:subClassOf obo:BFO_0000015 .
obo:PLANA_0004008 a rdfs:Class ;
rdfs:label "regenerating longitudinal fragment" ;
rdfs:comment "a longitudinal fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003608 .
obo:PLANA_0000552 a rdfs:Class ;
rdfs:label "sensory neuron" ;
rdfs:comment "Any neuron having a sensory function; an afferent neuron conveying sensory impulses." ;
rdfs:subClassOf obo:PLANA_0000462 , obo:PLANA_0000545 .
obo:PLANA_0003216 a rdfs:Class ;
rdfs:label "G2 phase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:GO_0051322 a rdfs:Class ;
rdfs:label "anaphase" ;
rdfs:comment "The cell cycle phase, following metaphase, during which the chromosomes separate and migrate towards the poles of the spindle." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0003256 a rdfs:Class ;
rdfs:label "meiotic metaphase 2 spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic metaphase II" ;
rdfs:subClassOf obo:PLANA_0000221 , obo:PLANA_0003254 .
obo:GO_1903047 a rdfs:Class ;
rdfs:label "mitotic cell cycle process" ;
rdfs:comment "A process that is part of the mitotic cell cycle." ;
rdfs:subClassOf obo:GO_0009987 , obo:GO_0022402 .
obo:GO_0051327 a rdfs:Class ;
rdfs:label "meiotic M phase" ;
rdfs:comment "A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase and occurs as part of a meiotic cell cycle." ;
rdfs:subClassOf obo:GO_0000279 , obo:GO_0098762 .
obo:PLANA_0000112 a rdfs:Class ;
rdfs:label "obsolete Schmidtea mediterranea developmental term" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0002073 a rdfs:Class ;
rdfs:label "phagocytic cell" ;
rdfs:comment "A cell that engulfs large particles or cells via invagination of the plasma membrane and creation of a phagosome." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0003205 a rdfs:Class ;
rdfs:label "anaphase neoblast" ;
rdfs:comment "neoblast undergoing mitotic anaphase" ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0002013 a rdfs:Class ;
rdfs:label "Category 1 cell" ;
rdfs:comment "Irradiation-sensitive, mesenchymal cells that are absent from the head region anterior to the eyes and the pharynx. The Category 1 designation encompasses the neoblast population." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002095 , obo:PLANA_0003116 .
obo:GO_0003674 a rdfs:Class ;
rdfs:label "molecular_function" ;
rdfs:comment "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." ;
rdfs:subClassOf obo:BFO_0000015 .
obo:PLANA_0000400 a rdfs:Class ;
rdfs:label "obsolete anatomical entity" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000140 a rdfs:Class ;
rdfs:label "anterior region of the whole animal" ;
rdfs:comment "Compartment along the anteroposterior axis closer to the head rather than the tail, from the head margin to the esophagus." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003706 a rdfs:Class ;
rdfs:label "anterior region of trunk fragment" ;
rdfs:comment "The anterior region of a fragment derived from pre- and post-pharyngeal amputations, encompassing the pharynx and parapharyngeal region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000482 a rdfs:Class ;
rdfs:label "dopaminergic neuron" ;
rdfs:comment "A neuron that expresses the neurotransmitter dopamine." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000556 .
obo:PLANA_0003245 a rdfs:Class ;
rdfs:label "meiotic prophase I spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic prophase I" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0002033 a rdfs:Class ;
rdfs:label "epidermal rhabdite" ;
rdfs:comment "Rhabdites located within epidermal cells." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000104 .
obo:PLANA_0000214 a rdfs:Class ;
rdfs:label "juvenile stage" ;
rdfs:comment "A postnatal stage of Smed development that initiates with hatching and proceeds until sexual maturity is reached. Reproductive structures develop during the juvenile stage." ;
rdfs:subClassOf obo:UBERON_0000105 .
obo:PLANA_0003710 a rdfs:Class ;
rdfs:label "anterior region of tail fragment" ;
rdfs:comment "The anterior region of a fragment derived from a postpharyngeal amputation encompassing the tail." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BFO_0000016 a rdfs:Class ;
rdfs:label "disposition"@en ;
rdfs:subClassOf obo:BFO_0000017 .
obo:PLANA_0003711 a rdfs:Class ;
rdfs:label "posterior region of tail fragment" ;
rdfs:comment "The posterior region of a fragment derived from a postpharyngeal amputation encompassing the tail." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0000278 a rdfs:Class ;
rdfs:label "mitotic cell cycle" ;
rdfs:comment "Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent." ;
rdfs:subClassOf obo:GO_0007049 .
obo:PLANA_0003306 a rdfs:Class ;
rdfs:label "ovary primordium" ;
rdfs:comment "This primordium develops into ovary" ;
rdfs:subClassOf obo:PLANA_0000131 , obo:PLANA_0003305 .
obo:IAO_0000030 a rdfs:Class ;
rdfs:label "information content entity"@en ;
rdfs:comment "A generically dependent continuant that is about some thing."@en ;
rdfs:subClassOf obo:BFO_0000031 .
obo:PLANA_0000242 a rdfs:Class ;
rdfs:label "obsolete anatomical cavity" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0007549 a rdfs:Class ;
rdfs:label "obsolete body wall musculature compartment" ;
rdfs:comment "no longer designating mediolateral regions using the contained_in object property" .
obo:PLANA_0000021 a rdfs:Class ;
rdfs:label "biotype" ;
rdfs:comment "Organisms sharing a specified genotype or karyotype." .
obo:PLANA_0002084 a rdfs:Class ;
rdfs:label "presynaptic terminal" ;
rdfs:comment "Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it." ;
rdfs:subClassOf obo:GO_0005575 .
obo:CARO_0000003 a rdfs:Class ;
rdfs:label "anatomical structure" ;
rdfs:comment "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." ;
rdfs:subClassOf obo:CARO_0000006 .
obo:PLANA_0000086 a rdfs:Class ;
rdfs:label "obsolete protosphere" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0004507 a rdfs:Class ;
rdfs:label "ovarian somatic gonadal cell" ;
rdfs:comment "ophis+ somatic cells (gh4-, nanos-) in the ovary that may provide trophic support to female germline stem cells and differentiating oogonia." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000119 .
obo:PLANA_0000231 a rdfs:Class ;
rdfs:label "vitelline gland" ;
rdfs:comment "Glands surrounding the oviducts which produce yolk cells. Yolk cells deposited into the oviducts travel to the genital atrium where they are packaged, along with one or more zygotes, into developing egg capsules." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0002000 a rdfs:Class ;
rdfs:label "adenal rhabdite" ;
rdfs:comment "Rhabdites that are located basally to the epidermis, in the mesenchyme. In Smed these are present in cells likely on their way to becoming part of the mature epidermis." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000104 .
obo:PLANA_0000026 a rdfs:Class ;
rdfs:label "gut" ;
rdfs:comment "The planarian triclad gut contains a central anterior gut branch connected to two posterior gut branches arranged around the pharynx. Secondary gut branches extend laterally from the primary gut branches, while tertiary gut branches extend from the secondary branches. Food and waste enter and exit the gut through the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0007572 a rdfs:Class ;
rdfs:label "juvenile organism" ;
rdfs:comment "A sexually immature member of the Schmidtea mediterranea sexuallly reproducing biotype" ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000136 .
obo:PLANA_0000015 a rdfs:Class ;
rdfs:label "non ciliated epithelial cell" ;
rdfs:comment "An epithelial cell lacking cilia." ;
rdfs:subClassOf obo:PLANA_0000100 .
obo:PLANA_0000566 a rdfs:Class ;
rdfs:label "enteric neuron" ;
rdfs:comment "A neruon contained within with the enteric nervous system (gastrodermal plexus)." ;
rdfs:subClassOf obo:PLANA_0000565 .
obo:PLANA_0000067 a rdfs:Class ;
rdfs:label "goblet cell" ;
rdfs:comment "Secretory cells that release digestive enzymes into the lumen of the intestine." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000105 .
obo:PLANA_0000071 a rdfs:Class ;
rdfs:label "longitudinal muscle cell" ;
rdfs:comment "Body wall muscle fibers arrayed along the anteroposterior axis. Upon regeneration, these muscles are thought to be established from truncated pre-existing fibers.Inner most body wall muscle fibers arrayed along the anteroposterior axis. These fibers are thicker than the outer longitudinal muscle fibers. The pattern of these muscles differs along the dorsoventral axis, with the dorsal arrangement converging at the central zone of the anterior pole. The ventral arrangement is more parallel or may diverge slightly as it approaches the ventral pole." ;
rdfs:subClassOf obo:PLANA_0000101 .
obo:PLANA_0002141 a rdfs:Class ;
rdfs:label "sperm duct epithelial surface" ;
rdfs:comment "Epithelial surface lining the sperm duct." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0002002 a rdfs:Class ;
rdfs:label "adhesive papilla" ;
rdfs:comment "Finger-like processes at the terminal pore of adhesive gland cells around the marginal adhesive zone. They protrude past the epidermis and are longer microvilli, and shorter than cilia." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000501 .
obo:PLANA_0003605 a rdfs:Class ;
rdfs:label "anterior fragment" ;
rdfs:comment "A fragment encompassing all or part of the anterior region of the animal." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0003717 a rdfs:Class ;
rdfs:label "ventral region of postpharyngeal fragment" ;
rdfs:comment "The ventral region of a fragment derived from two postpharyngeal amputations, removing the anterior region and the tail tip." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000056 a rdfs:Class ;
rdfs:label "ectolecithal embryo" ;
rdfs:comment "Turbellarian (freshwater flatworm) embryos that undergo a modified form of cleavage due to separation of oocyte and yolk. Yolk is not contained within oocytes, and is produced by somatic vitellogenic gland cells." ;
rdfs:subClassOf obo:PLANA_0000116 .
obo:PLANA_0000530 a rdfs:Class ;
rdfs:label "secretory vesicle" ;
rdfs:comment "A cytoplasmic, membrane bound vesicle that is capable of fusing to the plasma membrane to release its contents into the extracellular space." ;
rdfs:subClassOf obo:PLANA_0000527 .
obo:PLANA_0000493 a rdfs:Class ;
rdfs:label "obsolete nervous system commissure" ;
rdfs:comment "we will just use commissural neuron moving forward " .
obo:PLANA_0004519 a rdfs:Class ;
rdfs:label "embryonic pharynx neuron" ;
rdfs:comment "A neuronal cell innervating the embryonic pharynx. Four neurons innervate the radial muscle fibers that ring the oral opening." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000099 , obo:PLANA_0004518 .
obo:PLANA_0007516 a rdfs:Class ;
rdfs:label "nuclear pore" ;
rdfs:comment "Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined." ;
rdfs:subClassOf obo:PLANA_0000532 , obo:PLANA_0002079 .
obo:PLANA_0004517 a rdfs:Class ;
rdfs:label "blastomere" ;
rdfs:comment "An undifferentiated, cycling embryonic cell in Stage 1-5 embryos that expresses piwi-1, numerous adult asexual neoblast enriched genes, and early embryo enriched genes. Blastomeres give rise to temporary embryonic tissues during Stage 2, continue dividing asynchronously in the embryonic wall, and ultimately give rise to neoblasts and adult lineage progenitors beginning in Stage 5." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000123 .
obo:PLANA_0002114 a rdfs:Class ;
rdfs:label "post-blastema region" ;
rdfs:comment "Adjacent to blastema, or proximal to blastema." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0003238 a rdfs:Class ;
rdfs:label "prophase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic prophase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:PLANA_0000004 a rdfs:Class ;
rdfs:label "Stage 4" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 3 - 5 days post-egg capsule deposition at 20˚C. Dispersed blastomere cleavage in the embryonic wall. Yolk ingestion into the gut cavity. Early embryonic gut formation." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:BFO_0000001 a rdfs:Class ;
rdfs:label "entity"@en .
obo:PLANA_0003901 a rdfs:Class ;
rdfs:label "tail blastema" ;
rdfs:comment "blastema which develops into tail region" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000495 .
obo:PLANA_0003201 a rdfs:Class ;
rdfs:label "S phase neoblast" ;
rdfs:comment "neoblast undergoing mitotic S phase" ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0000230 a rdfs:Class ;
rdfs:label "tuba" ;
rdfs:comment "A sperm storage organ located immediately posterior to the ovary, at the anterior end of the oviduct. Oocytes exiting the ovary are fertilized in the tuba as they enter the oviduct." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002089 .
obo:PLANA_0000097 a rdfs:Class ;
rdfs:label "ventral nerve cord" ;
rdfs:comment "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:BSPO_0000072 a rdfs:Class ;
rdfs:label "posterior region" ;
rdfs:comment "Anatomical region posteriorly located on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0003714 a rdfs:Class ;
rdfs:label "anterior region of prepharyngeal fragment" ;
rdfs:comment "The anterior region of a fragment derived from two prepharyngeal amputations, removing the head and posterior regions of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000005 a rdfs:Class ;
rdfs:label "anatomical surface" ;
rdfs:comment "A 2D surface of an anatomical continuant." ;
rdfs:subClassOf obo:CARO_0000010 .
obo:PLANA_0000483 a rdfs:Class ;
rdfs:label "octopaminergic neuron" ;
rdfs:comment "Neurons that express the biogenic amine octopamine." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000556 .
obo:PLANA_0003242 a rdfs:Class ;
rdfs:label "meiotic S phase spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic S phase" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0000089 a rdfs:Class ;
rdfs:label "secondary gut branch" ;
rdfs:comment "Gut branches, originating from and connected to the primary gut branches, that extend laterally towards the body edge." ;
rdfs:subClassOf obo:PLANA_0002119 .
obo:PLANA_0003602 a rdfs:Class ;
rdfs:label "tail fragment" ;
rdfs:comment "A fragment derived from a postpharyngeal amputation encompassing the tail." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0000536 a rdfs:Class ;
rdfs:label "euchromatin" ;
rdfs:comment "A dispersed and relatively uncompacted form of chromatin." ;
rdfs:subClassOf obo:PLANA_0000534 .
obo:PLANA_0002122 a rdfs:Class ;
rdfs:label "perturbation" ;
rdfs:comment "An event or occurrence that causes damage to a tissue or organ." .
obo:PLANA_0002024 a rdfs:Class ;
rdfs:label "cilium" ;
rdfs:comment "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. The longitudinal array of microtubules are almost always in a 9+2 array with 2 microtubles in the central cilia bundle and 9 sets of doublet microtubules around the perimeter. The exception to this arrangement is spermatazoa flagella, which have a 9+1 array in planarians." ;
rdfs:subClassOf obo:PLANA_0000501 .
obo:PLANA_0004518 a rdfs:Class ;
rdfs:label "extraembryonic cell" ;
rdfs:comment "Post-mitotic, terminally differentiated cells which, give rise to temporary embryonic tissues." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0000037 a rdfs:Class ;
rdfs:label "obsolete definitive tissue" ;
rdfs:comment "we will move forward using \"tissue\" instead. We have not listed anything as a regenerating or developing tissue, so this seems unnecessary" .
obo:PLANA_0004506 a rdfs:Class ;
rdfs:label "testis somatic gonadal cell" ;
rdfs:comment "dmd-1+ expressing somatic cells within the testis that promote male GSC maintenance. dmd-1+, ophis-1+ somatic gonadal cells ensheath germ cells via long cytoplasmic processes and promote differentiation." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002096 .
obo:PLANA_0004004 a rdfs:Class ;
rdfs:label "regenerating postpharyngeal fragment" ;
rdfs:comment "a postpharyngeal fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003604 .
obo:BSPO_0000029 a rdfs:Class ;
rdfs:label "antero-lateral region" ;
rdfs:comment "Anatomical region that overlaps the anterior and lateral regions of a body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000071 , obo:BSPO_0000082 .
obo:PLANA_0000009 a rdfs:Class ;
rdfs:label "sigma neoblast" ;
rdfs:comment "A heterogeneous subpopulation of neoblasts with enriched expression of SoxP-1 and SoxP-2 thought to contain both pluripotent stem cells and tissue-specific progenitors." ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0000477 a rdfs:Class ;
rdfs:label "pharynx radial muscle cell" ;
rdfs:comment "Pharynx muscle fibers that run radially, connecting the outer muscle fibers and epithelia with their inner counterparts." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0003212 a rdfs:Class ;
rdfs:label "anaphase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic anaphase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:GO_0051323 a rdfs:Class ;
rdfs:label "metaphase" ;
rdfs:comment "The cell cycle phase, following prophase or prometaphase in higher eukaryotes, during which chromosomes become aligned on the equatorial plate of the cell." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0000044 a rdfs:Class ;
rdfs:label "cephalic ganglia" ;
rdfs:comment "The planarian brain, consisting of two bilaterally symmetric lobes occupying a ventral position in the head." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:GO_0003824 a rdfs:Class ;
rdfs:label "catalytic activity" ;
rdfs:subClassOf obo:GO_0003674 .
obo:PATO_0040012 a rdfs:Class ;
rdfs:label "plug shaped" ;
rdfs:comment "A shape that is in the form of a plug, being tube-like and expanded on one end." ;
rdfs:subClassOf obo:PATO_0000052 .
obo:PLANA_0004529 a rdfs:Class ;
rdfs:label "integumental system" ;
rdfs:comment "Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0003729 a rdfs:Class ;
rdfs:label "ventral region of lateral fragment" ;
rdfs:comment "The ventral region of a fragment derived from an amputation parallel to or along any edge, which overlaps the lateral region, dorso-lateral region, ventro-lateral region, antero-lateral margin, lateral margin, ventro-lateral margin, postero-lateral margin, dorso-lateral margin, antero-lateral region, postero-lateral region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000016 a rdfs:Class ;
rdfs:label "dorsal-ventral axis" ;
rdfs:comment "An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:PLANA_0002062 a rdfs:Class ;
rdfs:label "neuropeptidergic neuron" ;
rdfs:comment "A neuron that produces and releases neuropeptides at chemical synapses." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0002021 a rdfs:Class ;
rdfs:label "chromosome" ;
rdfs:comment "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information." ;
rdfs:subClassOf obo:PLANA_0000531 , obo:PLANA_0000532 .
obo:PLANA_0003302 a rdfs:Class ;
rdfs:label "pharynx primordium" ;
rdfs:comment "This primordium develops into pharynx" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000131 .
obo:PLANA_0000043 a rdfs:Class ;
rdfs:label "dorsal ventral margin of the whole animal" ;
rdfs:comment "Region along the edge of the animal where the dorsal and ventral surfaces meet." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000221 a rdfs:Class ;
rdfs:label "spermatocyte" ;
rdfs:comment "A tektin-1+ male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000228 .
obo:PLANA_0000403 a rdfs:Class ;
rdfs:label "obsolete anatomical space" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000508 a rdfs:Class ;
rdfs:label "cell-cell adhesion" ;
rdfs:comment "The attachment of one cell to another cell via adhesion molecules." ;
rdfs:subClassOf obo:PLANA_0000505 .
obo:BSPO_0000374 a rdfs:Class ;
rdfs:label "basal surface" ;
rdfs:comment "Anatomical surface that is located on the basal side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:GO_1903046 a rdfs:Class ;
rdfs:label "meiotic cell cycle process" ;
rdfs:comment "A process that is part of the meiotic cell cycle." ;
rdfs:subClassOf obo:GO_0009987 , obo:GO_0022402 , obo:GO_0022414 .
obo:PLANA_0003743 a rdfs:Class ;
rdfs:label "posterior region of wedge fragment" ;
rdfs:comment "The posterior region of a piece of tissue removed from the lateral margin at any given point that extendes interiorly to more medial structures." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:UBERON_0000068 a rdfs:Class ;
rdfs:label "embryo stage" ;
rdfs:comment "A life cycle stage that starts with fertilization and ends with the fully formed embryo." ;
rdfs:subClassOf obo:UBERON_0000105 .
obo:PLANA_0007545 a rdfs:Class ;
rdfs:label "obsolete epidermal compartment" ;
rdfs:comment "no longer designating mediolateral regions using the contained_in object property" .
obo:PATO_0000051 a rdfs:Class ;
rdfs:label "morphology" ;
rdfs:comment "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." ;
rdfs:subClassOf obo:PATO_0001241 .
obo:PLANA_0003703 a rdfs:Class ;
rdfs:label "posterior region of head fragment" ;
rdfs:comment "The posterior region of a fragment derived from a prepharyngeal amputation encompassing the head." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0004524 a rdfs:Class ;
rdfs:label "embryonic pharynx circular muscle cell" ;
rdfs:comment "Differentiated muscle cell present in a circular muscle fiber of the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 , obo:PLANA_0004518 .
obo:PLANA_0000134 a rdfs:Class ;
rdfs:label "longitudinal muscle progenitor cell" ;
rdfs:comment "piwi-1+, myoD+, snail-1+ progenitor neoblasts required for specification and creation of longitudinal muscle fibers." ;
rdfs:subClassOf obo:PLANA_0000019 , obo:PLANA_0000429 .
obo:PLANA_0000022 a rdfs:Class ;
rdfs:label "Category 5 cell" ;
rdfs:comment "Post-mitotic, ciliated epidermal cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 , obo:PLANA_0002032 .
obo:BFO_0000004 a rdfs:Class ;
rdfs:label "independent continuant"@en ;
rdfs:comment "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ;
rdfs:subClassOf obo:BFO_0000002 .
obo:PLANA_0000422 a rdfs:Class ;
rdfs:label "tail stripe" ;
rdfs:comment "Medial region of the tail; the parenchymal space between the posterior primary gut branches." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000102 .
obo:BFO_0000015 a rdfs:Class ;
rdfs:label "process"@en ;
rdfs:comment "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en ;
rdfs:subClassOf obo:BFO_0000003 .
obo:PLANA_0000102 a rdfs:Class ;
rdfs:label "anatomical region" ;
rdfs:comment "A subdivision of an anatomical compartment." ;
rdfs:subClassOf obo:UBERON_0000475 .
obo:PLANA_0002051 a rdfs:Class ;
rdfs:label "linear incision" ;
rdfs:comment "A breach of the epidermis and optionally down into other structures though an insult with a knife or other instrument, such that the movement includes the z direction and one or more of the x y direction." ;
rdfs:subClassOf obo:PLANA_0002046 .
obo:PLANA_0007538 a rdfs:Class ;
rdfs:label "adhesion gland" ;
rdfs:comment "Groupings of specialized epithelial cells located along the dorsal ventral margin. Adhesion glands are comprised of three cell types, the viscid and releasing gland cells which penetrate through an epithelial anchor cell and terminate at the epidermal surface." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0002010 a rdfs:Class ;
rdfs:label "basal body" ;
rdfs:comment "A membrane-tethered, short cylindrical array of microtubules and associated proteins found at the base of a eukaryotic cilium (also called flagellum) that is similar in structure to a centriole and derives from it. The cilium basal body is the site of assembly and remodelling of the cilium and serves as a nucleation site for axoneme growth. As well as anchoring the cilium, it is thought to provide a selective gateway regulating the entry of ciliary proteins and vesicles by intraflagellar transport." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000519 .
obo:PLANA_0000411 a rdfs:Class ;
rdfs:label "gastrodermis surface" ;
rdfs:comment "The surface of the gastrodermis in contact with the gut lumen." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0002040 a rdfs:Class ;
rdfs:label "flagellum" ;
rdfs:comment "Planarian undulipodia consisting of spermatazoa cell posterior protrusions. Planarian spermatozoa contain two flagella and are composed of 9 + 1 axonemal microtubule arrangements in their flagella (markedly different from the 9 + 2 structures generally observed in sperm of other animals)." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000501 .
obo:PLANA_0000082 a rdfs:Class ;
rdfs:label "obsolete racing stripe" ;
rdfs:comment "racing stripe is now a synonym of PLANA:0000055 dorsal stripe" .
obo:PLANA_0000547 a rdfs:Class ;
rdfs:label "commissural neuron" ;
rdfs:comment "A neuron that has an axon which crosses the midline." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0002111 a rdfs:Class ;
rdfs:label "X2 cell" ;
rdfs:comment "A sorted cell population containing irradiation-sensitive and irradiation-insensitive cells, characterized by weak Hoescht 33342 and calcein-AM staining. X2 cell populations contain neoblasts as well as a variety of lineage-dedicated post-mitotic progenitor cells." ;
rdfs:subClassOf obo:PLANA_0000499 , obo:PLANA_0002138 .
obo:PLANA_0003253 a rdfs:Class ;
rdfs:label "meiotic telophase I spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic telophase I" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0000078 a rdfs:Class ;
rdfs:label "outer longitudinal muscle cell" ;
rdfs:comment "Body wall muscle fibers arrayed along the anteroposterior axis. Upon regeneration, these muscles are thought to be established from truncated pre-existing fibers." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000071 .
obo:PLANA_0000472 a rdfs:Class ;
rdfs:label "pharynx outer epithelium" ;
rdfs:comment "Heavily ciliated epidermal cells covering the outer surface of the pharynx shaft. These are \"insunk\" epidermal cells in which the nuclei reside behind the layers of longitudinal and circumferential muscles and the epithelial cell body sends out a ciliated projection to the surface to cover and encase the shaft." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002023 .
obo:PLANA_0000534 a rdfs:Class ;
rdfs:label "chromatin" ;
rdfs:comment "The ordered and organized complex of DNA, protein (histones), and sometimes RNA, that forms the chromosome." ;
rdfs:subClassOf obo:PLANA_0000532 .
obo:PLANA_0002006 a rdfs:Class ;
rdfs:label "antrum" ;
rdfs:comment "A chamber formation in an organ." ;
rdfs:subClassOf obo:UBERON_0002553 .
obo:PLANA_0000032 a rdfs:Class ;
rdfs:label "dorsal midline" ;
rdfs:comment "The median line/plane of bilateral symmetry along the anteroposterior axis on the dorsal surface of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0051319 a rdfs:Class ;
rdfs:label "G2 phase" ;
rdfs:comment "The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation (usually by mitosis or meiosis)." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0004513 a rdfs:Class ;
rdfs:label "primtive gut cell surface" ;
rdfs:comment "The surface of the primitive gut cells in contact with the embryonic wall." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0000241 a rdfs:Class ;
rdfs:label "pharynx longitudinal muscle cell" ;
rdfs:comment "Pharynx muscle fibers running anteroposterior (proximal to distal)." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000101 .
obo:PLANA_0000011 a rdfs:Class ;
rdfs:label "protonephridial progenitor cell" ;
rdfs:comment "Neoblasts and post-mitotic, differentiating daughters coexpressing POU2-3, six1/2-2, Sal1, Eya and Osr,required for maintenance and regeneration of protonephridial cell types." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:GO_0007132 a rdfs:Class ;
rdfs:label "meiotic metaphase I" ;
rdfs:comment "The cell cycle phase, following prophase I, during which chromosomes become aligned on the equatorial plate of the cell as part of meiosis I." ;
rdfs:subClassOf obo:GO_0051323 , obo:GO_0098764 .
obo:PLANA_0003231 a rdfs:Class ;
rdfs:label "prophase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic prophase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:PLANA_0002103 a rdfs:Class ;
rdfs:label "synaptonemal complex" ;
rdfs:comment "A proteinaceous scaffold found between homologous chromosomes during meiosis. It consists of 2 lateral elements and a central element, all running parallel to each other. Transverse filaments connect the lateral elements to the central element." ;
rdfs:subClassOf obo:PLANA_0002123 .
obo:PLANA_0003118 a rdfs:Class ;
rdfs:label "prepharyngeal cell" ;
rdfs:comment "cell which is part of the prepharyngeal region" .
obo:PLANA_0007567 a rdfs:Class ;
rdfs:label "cilated neuron" ;
rdfs:comment "A neuron that has cilia." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0000053 a rdfs:Class ;
rdfs:label "distal tubule" ;
rdfs:comment "Sinusoidal, non-ciliated tubules connected to proximal tubules within the parenchyma. Tubules are formed via intercellular junctions between two epithelial cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000048 a rdfs:Class ;
rdfs:label "diagonal muscle cell" ;
rdfs:comment "Body wall muscle fibers arrayed diagonally along the anteroposterior axis." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0000488 a rdfs:Class ;
rdfs:label "basophilic gland cell" ;
rdfs:comment "One of two distinct histochemical classes of gland cells, these are found near the ventral mesenchyme, the pharynx and in the dorsal region of the head. May also be called cyanophilic gland cells." ;
rdfs:subClassOf obo:PLANA_0000485 .
obo:PLANA_0000433 a rdfs:Class ;
rdfs:label "obsolete cellular component" ;
rdfs:comment "replacing with GO term" .
obo:GO_0007138 a rdfs:Class ;
rdfs:label "meiotic anaphase II" ;
rdfs:comment "The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of meiosis II." ;
rdfs:subClassOf obo:GO_0051322 , obo:GO_0098765 .
obo:PLANA_0000529 a rdfs:Class ;
rdfs:label "nucleus" ;
rdfs:comment "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." ;
rdfs:subClassOf obo:PLANA_0000527 .
obo:PLANA_0002066 a rdfs:Class ;
rdfs:label "nuclear lumen" ;
rdfs:comment "The volume enclosed by the nuclear inner membrane." ;
rdfs:subClassOf obo:PLANA_0000532 .
obo:PLANA_0002133 a rdfs:Class ;
rdfs:label "regenerating fragment" ;
rdfs:comment "A fragment that has undergone wound healing and is undergoing tissue replacement and morphallaxis." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0003725 a rdfs:Class ;
rdfs:label "ventral region of posterior fragment" ;
rdfs:comment "The ventral region of a fragment encompassing all or part of the posterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0007556 a rdfs:Class ;
rdfs:label "embryonic pharynx lumen" ;
rdfs:comment "A lumen enclosed by the embryonic pharynx epithelial cells through which yolk cells are transported into the embryonic gut cavity." ;
rdfs:subClassOf obo:BFO_0000141 , obo:PLANA_0002053 .
obo:BSPO_0000055 a rdfs:Class ;
rdfs:label "anterior side" ;
rdfs:comment "An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane." ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:BSPO_0000113 a rdf:Property ;
rdfs:label "opposite to" ;
rdfs:comment "Direcly opposite to. i.e. on the opposite side through the axis." ;
rdfs:range .
obo:BSPO_0000096 a rdf:Property ;
rdfs:label "anterior to" ;
rdfs:comment "x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." ;
rdfs:seeAlso obo:FBql_00005863 , obo:FBcv_0000039 ;
rdfs:range .
obo:BSPO_0000066 a rdfs:Class ;
rdfs:label "lateral side" ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:PLANA_0003800 a rdfs:Class ;
rdfs:label "anterior photoreceptor neuron" ;
rdfs:comment "photoreceptor neuron is contained in the anterior region of the eye" ;
rdfs:subClassOf obo:PLANA_0000017 .
obo:PLANA_0003736 a rdfs:Class ;
rdfs:label "dorsal region of plug fragment" ;
rdfs:comment "The dorsal region of a 3D piece of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003107 a rdfs:Class ;
rdfs:label "body wall muscle cell" ;
rdfs:comment "cell which is part of the body wall musculature" .
obo:PLANA_0000518 a rdfs:Class ;
rdfs:label "intracellular organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ;
rdfs:subClassOf obo:PLANA_0000509 .
obo:PLANA_0004000 a rdfs:Class ;
rdfs:label "regenerating head fragment" ;
rdfs:comment "a head fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003600 .
obo:PLANA_0003606 a rdfs:Class ;
rdfs:label "posterior fragment" ;
rdfs:comment "A fragment encompassing all or part of the posterior region of the animal." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0000064 a rdfs:Class ;
rdfs:label "flame bulb" ;
rdfs:comment "Terminal structure of protonephridia unit; consists of flame cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0003104 a rdfs:Class ;
rdfs:label "enteric muscle cell" ;
rdfs:comment "cell which is part of the enteric musculature" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0000138 a rdfs:Class ;
rdfs:label "Hyman vesicle" ;
rdfs:comment "PROG-2-5 positive granules that range in size from 0.5um to 1um present in epithelia and epithelia progenitor cells. These are distinct from rhabdites." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002137 .
obo:PLANA_0000467 a rdfs:Class ;
rdfs:label "submuscular nerve plexus" ;
rdfs:comment "Plexus of nerves that innervate the body wall musculature." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000492 .
obo:PLANA_0002055 a rdfs:Class ;
rdfs:label "mechanosensory neuron" ;
rdfs:comment "Any neuron that is capable of some detection of mechanical stimulus involved in sensory perception." ;
rdfs:subClassOf obo:PLANA_0000552 .
obo:PLANA_0007509 a rdfs:Class ;
rdfs:label "plasma membrane" ;
rdfs:comment "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." ;
rdfs:subClassOf obo:PLANA_0000520 .
obo:PLANA_0003804 a rdfs:Class ;
rdfs:label "posterior muscle cell" ;
rdfs:comment "muscle cell is contained in the posterior region" ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0003220 a rdfs:Class ;
rdfs:label "telophase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic telophase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:PLANA_0003223 a rdfs:Class ;
rdfs:label "G2 phase spermatogonium" ;
rdfs:comment "spermatogonium undergoing mitotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:PLANA_0000558 a rdfs:Class ;
rdfs:label "sympathetic neuron" ;
rdfs:comment "Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0003707 a rdfs:Class ;
rdfs:label "posterior region of trunk fragment" ;
rdfs:comment "The posterior region of a fragment derived from pre- and post-pharyngeal amputations, encompassing the pharynx and parapharyngeal region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0051301 a rdfs:Class ;
rdfs:label "cell division" ;
rdfs:comment "The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells." ;
rdfs:subClassOf obo:GO_0009987 .
obo:PLANA_0002129 a rdfs:Class ;
rdfs:label "longitudinal region" ;
rdfs:comment "A region bounded by any sagittal plane though the animal and the left or right side of the animal. NOTE: sagittal plane is an anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size" ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0002095 a rdfs:Class ;
rdfs:label "somatic cell" ;
rdfs:comment "One of the cells of the body that compose the tissues, organs, and parts of that individual other than the germ cells." ;
rdfs:subClassOf obo:PLANA_0000499 .
obo:PLANA_0003115 a rdfs:Class ;
rdfs:label "ommochrome pigment granule" ;
rdfs:comment "pigment granule which is part of the ommochrome pigment cell" .
obo:PLANA_0007534 a rdfs:Class ;
rdfs:label "pharynx inner epithelium" ;
rdfs:comment "Heavily ciliated epidermal cells covering the inner surface of the pharynx shaft." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002023 .
obo:OBI_0000011 a rdfs:Class ;
rdfs:label "planned process"@en ;
rdfs:comment "A process that realizes a plan which is the concretization of a plan specification."@en ;
rdfs:subClassOf obo:BFO_0000015 .
obo:PLANA_0002113 a rdfs:Class ;
rdfs:label "postpharyngeal region" ;
rdfs:comment "Posterior to the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:PLANA_0000501 a rdfs:Class ;
rdfs:label "cell projection" ;
rdfs:comment "A prolongation or process extending from a cell." ;
rdfs:subClassOf obo:GO_0005575 .
obo:GO_0022403 a rdfs:Class ;
rdfs:label "cell cycle phase" ;
rdfs:comment "One of the distinct periods or stages into which the cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events." ;
rdfs:subClassOf obo:GO_0044848 .
obo:UBERON_0007567 a rdfs:Class ;
rdfs:label "regenerating anatomical structure" ;
rdfs:comment "An anatomical structure that is undergoing regeneration." ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0002057 a rdfs:Class ;
rdfs:label "meiotic germ cell" ;
rdfs:comment "A germ cell undergoing meiosis." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000227 .
obo:PLANA_0004521 a rdfs:Class ;
rdfs:label "embryonic pharynx epithelial cell" ;
rdfs:comment "foxA1+ epithelial cell contained in the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000100 , obo:PLANA_0004518 .
obo:PLANA_0000019 a rdfs:Class ;
rdfs:label "muscle progenitor cell" ;
rdfs:comment "Progenitor neoblasts implicated in the maintenance and regeneration of muscle fibers." ;
rdfs:subClassOf obo:PLANA_0000120 .
obo:PLANA_0000215 a rdfs:Class ;
rdfs:label "reproductive system product" ;
rdfs:comment "Products of the reproductive system include gametes, zygotes, yolk cells and egg capsules." ;
rdfs:subClassOf obo:BFO_0000040 , obo:UBERON_0000061 .
obo:PLANA_0003209 a rdfs:Class ;
rdfs:label "G2 phase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:PLANA_0000492 a rdfs:Class ;
rdfs:label "nerve plexus" ;
rdfs:comment "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." ;
rdfs:subClassOf obo:PLANA_0000113 .
obo:PLANA_0002009 a rdfs:Class ;
rdfs:label "axoneme" ;
rdfs:comment "The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000519 .
obo:PLANA_0002068 a rdfs:Class ;
rdfs:label "nuclear periphery" ;
rdfs:comment "The portion of the nuclear lumen proximal to the inner nuclear membrane." ;
rdfs:subClassOf obo:PLANA_0000532 .
obo:PLANA_0000511 a rdfs:Class ;
rdfs:label "obsolete acidophilic cytoplasm" ;
rdfs:comment "term is not needed." .
obo:PLANA_0000201 a rdfs:Class ;
rdfs:label "bursal canal" ;
rdfs:comment "The passageway connecting the genital atrium to the copulatory bursa. Part of the copulatory apparatus. During mating, sperm from a partner is deposited into the bursal canal, where it collects in the copulatory bursa before travelling up the oviducts to the tuba." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:BFO_0000002 a rdfs:Class ;
rdfs:label "continuant"@en ;
rdfs:comment "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ;
rdfs:subClassOf obo:BFO_0000001 .
obo:PLANA_0007504 a rdfs:Class ;
rdfs:label "obsolete dorsal compartment" ;
rdfs:comment "replaced by dorsal region PLANA:0000141" .
obo:PLANA_0003232 a rdfs:Class ;
rdfs:label "metaphase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic metaphase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:PLANA_0007560 a rdfs:Class ;
rdfs:label "obsolete gastrovascular compartment" ;
rdfs:comment "no longer designating mediolateral regions using the contained_in object property" .
obo:GO_0016043 a rdfs:Class ;
rdfs:label "cellular component organization" ;
rdfs:comment "A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component." ;
rdfs:subClassOf obo:GO_0071840 .
obo:PLANA_0000481 a rdfs:Class ;
rdfs:label "serotonergic neuron" ;
rdfs:comment "Neurons that express the neurotransmitter serotonin." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000556 .
obo:PLANA_0003503 a rdfs:Class ;
rdfs:label "ventral epidermis progenitor cell" ;
rdfs:comment "A progenitor cell that gives rise to one or more of the cell type(s) in the epidermis." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:PLANA_0002032 a rdfs:Class ;
rdfs:label "epidermal cell" ;
rdfs:comment "An epithelial cell of the integument (the outer layer of an organism)." ;
rdfs:subClassOf obo:PLANA_0000100 .
obo:PLANA_0000076 a rdfs:Class ;
rdfs:label "oral hemisphere" ;
rdfs:comment "Stage 3-5 embryo hemisphere centered around the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000423 .
obo:PLANA_0007559 a rdfs:Class ;
rdfs:label "ovary nerve plexus" ;
rdfs:comment "Nerve plexus surrounding the ovary." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000492 .
obo:PLANA_0003221 a rdfs:Class ;
rdfs:label "G1 phase spermatogonium" ;
rdfs:comment "spermatogonium undergoing mitotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:GO_0000089 a rdfs:Class ;
rdfs:label "mitotic metaphase" ;
rdfs:comment "The cell cycle phase, following prophase, during which chromosomes become aligned on the equatorial plate of the cell as part of a mitotic cell cycle." ;
rdfs:subClassOf obo:GO_0051323 .
obo:GO_0007128 a rdfs:Class ;
rdfs:label "meiotic prophase I" ;
rdfs:comment "The cell cycle phase which is the first stage of meiosis I and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell." ;
rdfs:subClassOf obo:GO_0051324 , obo:GO_0098764 .
obo:GO_0140013 a rdfs:Class ;
rdfs:label "meiotic nuclear division" ;
rdfs:comment "One of the two nuclear divisions that occur as part of the meiotic cell cycle." ;
rdfs:subClassOf obo:GO_0000280 , obo:GO_1903046 .
obo:PLANA_0000055 a rdfs:Class ;
rdfs:label "dorsal stripe" ;
rdfs:comment "Ciliated epithelial cells along the dorsal midline." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002023 .
obo:UBERON_0000061 a rdfs:Class ;
rdfs:label "anatomical structure" ;
rdfs:comment "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." ;
rdfs:subClassOf obo:UBERON_0000465 .
obo:PATO_0005024 a rdfs:Class ;
rdfs:label "longitudinal orientation" ;
rdfs:comment "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis." ;
rdfs:subClassOf obo:PATO_0000133 .
obo:GO_0000238 a rdfs:Class ;
rdfs:label "zygotene" ;
rdfs:comment "The cell cycle phase which follows leptotene during prophase I of meiosis, and during which each chromosome pairs with its homolog; the two become aligned and crossing over may occur." ;
rdfs:subClassOf obo:GO_0098764 .
obo:PLANA_0000226 a rdfs:Class ;
rdfs:label "obsolete cross-fertilization" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:CARO_0000007 a rdfs:Class ;
rdfs:label "immaterial anatomical entity" ;
rdfs:comment "An anatomical entity that has no mass." ;
rdfs:subClassOf obo:BFO_0000141 , obo:CARO_0000000 .
obo:PLANA_0000407 a rdfs:Class ;
rdfs:label "pharynx pouch cavity" ;
rdfs:comment "Anatomical space between the pharynx and the epithelial cells comprising parapharyngeal pouch." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0002553 .
obo:BSPO_0000018 a rdfs:Class ;
rdfs:label "transverse plane" ;
rdfs:comment "Anatomical plane that divides body into anterior and posterior parts." ;
rdfs:subClassOf obo:BSPO_0000400 .
obo:PLANA_0007529 a rdfs:Class ;
rdfs:label "ganglion" ;
rdfs:comment "A biological tissue mass of nerve cell bodies." ;
rdfs:subClassOf obo:PLANA_0000113 .
obo:PLANA_0000001 a rdfs:Class ;
rdfs:label "Stage 1" ;
rdfs:comment "A stage of Smed embryonic development, 0 - 2 days post-egg capsule deposition at 20˚C. Zygote and dispersed blastomere cleavage in a yolk syncytium." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:PLANA_0003742 a rdfs:Class ;
rdfs:label "anterior region of wedge fragment" ;
rdfs:comment "The anterior region of a piece of tissue removed from the lateral margin at any given point that extendes interiorly to more medial structures." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000087 a rdfs:Class ;
rdfs:label "proximal tubule" ;
rdfs:comment "Ciliated epithelial cells form tubules, generating coiled, branching units terminating in flame bulbs. Tubules are formed via intercellular junctions between two epithelial cells. Proximal tubules are connected to non-ciliated distal tubules within the parenchyma." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000562 a rdfs:Class ;
rdfs:label "central nervous system neuron" ;
rdfs:comment "Any neuron that is part of a central nervous system." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:GO_0016301 a rdfs:Class ;
rdfs:label "kinase activity" ;
rdfs:comment "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." ;
rdfs:subClassOf obo:GO_0016772 .
obo:PLANA_0002098 a rdfs:Class ;
rdfs:label "stalk" ;
rdfs:comment "A thin, flexible rod that anchors an egg capsule to a solid substrate." ;
rdfs:subClassOf obo:BFO_0000040 , obo:UBERON_0000476 .
obo:PLANA_0000522 a rdfs:Class ;
rdfs:label "membrane part" ;
rdfs:comment "Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." ;
rdfs:subClassOf obo:GO_0005575 .
obo:PLANA_0000460 a rdfs:Class ;
rdfs:label "anterior commissure" ;
rdfs:comment "A bundle of nerve fibers connecting the two cephalic ganglia." ;
rdfs:subClassOf obo:PLANA_0000494 .
obo:PLANA_0000232 a rdfs:Class ;
rdfs:label "copulatory apparatus" ;
rdfs:comment "Accessory reproductive structures involved in copulation, egg capsule development and laying." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002090 .
obo:GO_0000239 a rdfs:Class ;
rdfs:label "pachytene" ;
rdfs:comment "The cell cycle phase which follows zygotene during prophase I of meiosis, and during which crossing over occurs between a chromatid in one partner and another chromatid in the homologous chromosome." ;
rdfs:subClassOf obo:GO_0098764 .
obo:PLANA_0002135 a rdfs:Class ;
rdfs:label "parasagittal orientation" ;
rdfs:comment "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane, which runs longitudinally, and is never medial." ;
rdfs:subClassOf obo:PLANA_0002134 .
obo:PLANA_0000206 a rdfs:Class ;
rdfs:label "penis papilla" ;
rdfs:comment "A rounded protuberance, connected to the seminal vesicles, responsible for transferring semen into a mating partner's bursal canal." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002089 .
obo:PLANA_0007571 a rdfs:Class ;
rdfs:label "NBC cell" ;
rdfs:comment "Guidepost cell present at the medial brain, ventral to the optic chiasm. Closely associated with photoreceptor axons during regneration. Name acronym stands for notum+ brain cells." ;
rdfs:subClassOf obo:PLANA_0007570 .
obo:PLANA_0000432 a rdfs:Class ;
rdfs:label "obsolete regenerating anatomical structure" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000135 a rdfs:Class ;
rdfs:label "female primordial germ cell" ;
rdfs:comment "Cells expressing nanos that are located ventrally in the location that the ovaries form. Primordial germ cells are present in both asexual adults and sexual hermaphrodites. This term may be redundant with oogonial stem cell." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000121 , obo:PLANA_0000229 .
obo:PLANA_0002005 a rdfs:Class ;
rdfs:label "anterior tip" ;
rdfs:comment "The anterior-medial region of the head margin." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:PLANA_0007515 a rdfs:Class ;
rdfs:label "smooth endoplasmic reticulum" ;
rdfs:comment "Endoplamic reticulum that does not contain ribosomes, which synthesizes lipids, phospholipids, and steroids." ;
rdfs:subClassOf obo:PLANA_0007513 .
obo:PLANA_0000464 a rdfs:Class ;
rdfs:label "GABAergic neuron" ;
rdfs:comment "Neurons that express glutamine decarboxylase." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000556 .
obo:PLANA_0002117 a rdfs:Class ;
rdfs:label "obsolete oblique" ;
rdfs:comment "term is not needed." .
obo:PLANA_0000540 a rdfs:Class ;
rdfs:label "electrically signaling cell" ;
rdfs:comment "A cell that initiates an electrical signal and passes that signal to another cell." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0000109 a rdfs:Class ;
rdfs:label "obsolete anatomical compartment subdivision feature" ;
rdfs:comment "extra layer of complexity not needed upon further examination" .
obo:PLANA_0000505 a rdfs:Class ;
rdfs:label "cell-cell contact zone" ;
rdfs:comment "Extended zone of intimate apposition between two cells containing one or more types of intercellular junctions." ;
rdfs:subClassOf obo:GO_0005575 .
obo:PLANA_0000062 a rdfs:Class ;
rdfs:label "esophagus" ;
rdfs:comment "Attachment between the triclad gut and the proximal end of the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000072 a rdfs:Class ;
rdfs:label "mouth" ;
rdfs:comment "The sole point of entry and exit for the Triclad planarian flatworm gut. The mouth is connected to the pharyngeal pouch to allow for exit and re-entry of the pharynx on the ventral side of the animal. The mouth contains several cell types, including epithelial cells, muscle, and secretory cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0002142 a rdfs:Class ;
rdfs:label "parenchyma" ;
rdfs:comment "A loosely organized collection of connective tissue and cells, including neoblasts and their immediate progeny, located in the space outside of the organs between the body wall musculature and the gut." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0003113 a rdfs:Class ;
rdfs:label "pharynx pouch epithelial cell" ;
rdfs:comment "epithelial cell which is part of the pharynx pouch" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0002076 a rdfs:Class ;
rdfs:label "pigment granule" ;
rdfs:comment "A small, subcellular membrane-bounded vesicle containing pigment and/or pigment precursor molecules. Pigment granule biogenesis is poorly understood, as pigment granules are derived from multiple sources including the endoplasmic reticulum, coated vesicles, lysosomes, and endosomes." ;
rdfs:subClassOf obo:PLANA_0000526 .
obo:PLANA_0000061 a rdfs:Class ;
rdfs:label "enteric musculature" ;
rdfs:comment "Visceral muscle surrounding the gut." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000013 .
obo:PLANA_0000128 a rdfs:Class ;
rdfs:label "sperm duct epithelial cell" ;
rdfs:comment "Ciliated epithelial cells comprising the sperm ducts." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 .
obo:PLANA_0004514 a rdfs:Class ;
rdfs:label "embryonic gut cell surface" ;
rdfs:comment "The surface of phagocytic embryonic gut cells in contact with ingested yolk cells." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0000410 a rdfs:Class ;
rdfs:label "basal surface of the epidermis" ;
rdfs:comment "The basal surface of the epidermis in direct contact with the basal lamina." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0007548 a rdfs:Class ;
rdfs:label "transverse commissure" ;
rdfs:comment "Axon tracts from ganglia that cross the midline, connecting the two ventral nerve cords." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002025 .
obo:PLANA_0007570 a rdfs:Class ;
rdfs:label "NMC cell" ;
rdfs:comment "Guidepost cell assocaited with the visual circuit, present at the axon choice point ventral, posterior to and slightly medial to the eye. Name acronym stands for notum+ muscle cells at the choice point." ;
rdfs:subClassOf obo:PLANA_0007569 .
obo:PLANA_0000474 a rdfs:Class ;
rdfs:label "pharynx inner circular muscle cell" ;
rdfs:comment "Pharynx muscle fiber that runs circumferentially about the pharynx and lies just beneath the inner logitudinal pharynx muscle fibers." ;
rdfs:subClassOf obo:PLANA_0007535 .
obo:GO_0051326 a rdfs:Class ;
rdfs:label "telophase" ;
rdfs:comment "The cell cycle phase which follows anaphase during M phase of mitosis and meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0002043 a rdfs:Class ;
rdfs:label "germ cell cyst" ;
rdfs:comment "A clonally-related group of interconnected spermatogonial or oogonial cells, enveloped by somatic gonadal cells." ;
rdfs:subClassOf obo:PLANA_0002090 , obo:PLANA_0002136 .
obo:PLANA_0002106 a rdfs:Class ;
rdfs:label "septate junction" ;
rdfs:comment "A cell-cell junction in invertebrates that seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other." ;
rdfs:subClassOf obo:PLANA_0000507 .
obo:PLANA_0002083 a rdfs:Class ;
rdfs:label "presynaptic cell" ;
rdfs:comment "The part of a synapse that is part of the presynaptic cell." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0000034 a rdfs:Class ;
rdfs:label "epidermis" ;
rdfs:comment "A single cell layer of post-mitotic epithelial cells containing ciliated and non-ciliated cell types forming the exterior surface of the animal." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0000526 a rdfs:Class ;
rdfs:label "membrane-bounded organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." ;
rdfs:subClassOf obo:PLANA_0000525 .
obo:PLANA_0003250 a rdfs:Class ;
rdfs:label "diakinesis stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing diakinesis" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:BSPO_0000084 a rdfs:Class ;
rdfs:label "ventral region" ;
rdfs:comment "Anatomical region ventrally located on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0000042 a rdfs:Class ;
rdfs:label "anterior primary gut branch" ;
rdfs:comment "The single, central gut branch of the triclad gut anterior to the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002086 .
obo:BFO_0000019 a rdfs:Class ;
rdfs:label "quality"@en ;
rdfs:subClassOf obo:BFO_0000020 .
obo:PLANA_0000565 a rdfs:Class ;
rdfs:label "autonomic neuron" ;
rdfs:comment "A neruon whose cell body is within an autonomic ganglion." ;
rdfs:subClassOf obo:PLANA_0000564 .
obo:PLANA_0000470 a rdfs:Class ;
rdfs:label "neuropil" ;
rdfs:comment "A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PATO_0002006 a rdfs:Class ;
rdfs:label "2-D shape" ;
rdfs:comment "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." ;
rdfs:subClassOf obo:PATO_0000052 .
obo:PLANA_0000099 a rdfs:Class ;
rdfs:label "neuron" ;
rdfs:comment "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." ;
rdfs:subClassOf obo:PLANA_0000540 .
obo:BSPO_0000196 a rdfs:Class ;
rdfs:label "medial-external axis" ;
rdfs:comment "An anatomical axis that extends from the center of the body outwards or externally." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:PLANA_0000045 a rdfs:Class ;
rdfs:label "circular muscle cell" ;
rdfs:comment "Body wall muscle fibers arrayed around the dorsoventral axis. Upon regeneration, these are thought to be produced de novo in the blastema." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:BSPO_0000073 a rdfs:Class ;
rdfs:label "apical region" ;
rdfs:comment "Anatomical region located on the apical end on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0000426 a rdfs:Class ;
rdfs:label "obsolete acellular anatomical structure" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000421 a rdfs:Class ;
rdfs:label "tail region" ;
rdfs:comment "Caudal region, beginning at the mouth and ending at posterior pole." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:PLANA_0002065 a rdfs:Class ;
rdfs:label "nuclear inner membrane" ;
rdfs:comment "The inner, i.e. lumen-facing, lipid bilayer of the nuclear envelope." ;
rdfs:subClassOf obo:PLANA_0000522 .
obo:PLANA_0000031 a rdfs:Class ;
rdfs:label "pigment cup cell" ;
rdfs:comment "Non-neuronal, pigmented cells arrayed along the proximal side of the optic cup." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000561 .
obo:PLANA_0002128 a rdfs:Class ;
rdfs:label "fragment" ;
rdfs:comment "A piece of tissue isolated from the body." ;
rdfs:subClassOf obo:UBERON_0007567 .
obo:PLANA_0004533 a rdfs:Class ;
rdfs:label "sperm duct epithelium" ;
rdfs:comment "Ciliated epithelium lining the sperm duct." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002023 .
obo:PLANA_0002094 a rdfs:Class ;
rdfs:label "secretory granule" ;
rdfs:comment "A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules." ;
rdfs:subClassOf obo:PLANA_0000526 .
obo:PLANA_0000103 a rdfs:Class ;
rdfs:label "central nervous system" ;
rdfs:comment "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord." ;
rdfs:subClassOf obo:PLANA_0000025 .
obo:PLANA_0000051 a rdfs:Class ;
rdfs:label "obsolete direct development" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0000094 a rdfs:Class ;
rdfs:label "obsolete tissue morphogenesis" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0002054 a rdfs:Class ;
rdfs:label "marginal adhesive zone" ;
rdfs:comment "Zone present along the lateral dorsoventral boundary that sits just underneath the animal, in contact with substrates. It is comprised of bunches of adhesion gland cells whose terminal pores form pore rosettes through the dorsal ventral boundary epidermis.This region of is devoid of rhabdites." ;
rdfs:subClassOf obo:BSPO_0000086 .
obo:PLANA_0003243 a rdfs:Class ;
rdfs:label "meiotic G1 phase spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:GO_0009987 a rdfs:Class ;
rdfs:label "cellular process" ;
rdfs:comment "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." ;
rdfs:subClassOf obo:GO_0008150 .
obo:PLANA_0002035 a rdfs:Class ;
rdfs:label "eumelanin" ;
rdfs:comment "The black pigment that gives non-neuronal pigment cells of the optic cup their characteristic color." ;
rdfs:subClassOf obo:BFO_0000004 , obo:GO_0005575 .
obo:PLANA_0000066 a rdfs:Class ;
rdfs:label "gastrodermis" ;
rdfs:comment "The single cell layer columnar epithelial lining of the intestine. The gastrodermis is surrounded by a basal lamina and enteric muscle." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002118 .
obo:PLANA_0004009 a rdfs:Class ;
rdfs:label "regenerating plug fragment" ;
rdfs:comment "a plug fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003609 .
obo:PLANA_0000005 a rdfs:Class ;
rdfs:label "Stage 5" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 5-7 days post-egg capsule deposition at 20˚C. Organogenesis onset. Downregulation of early embryo enriched transcripts and birth of adult lineages within the blastomere population. Early embryonic gut formation continues. Yolk ingestion into the gut cavity." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:PLANA_0003210 a rdfs:Class ;
rdfs:label "prophase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic prophase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:PLANA_0000117 a rdfs:Class ;
rdfs:label "embryonic structure" ;
rdfs:comment "Anatomical structure that is part of an embryo." ;
rdfs:subClassOf obo:UBERON_0005423 .
obo:PLANA_0003401 a rdfs:Class ;
rdfs:label "testis lumen" ;
rdfs:comment "lumen which is part of the testis" ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002053 .
obo:PLANA_0000515 a rdfs:Class ;
rdfs:label "vacuole" ;
rdfs:comment "A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." ;
rdfs:subClassOf obo:PLANA_0000526 .
obo:PLANA_0002131 a rdfs:Class ;
rdfs:label "plug wound" ;
rdfs:comment "A wound resulting from the removal of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:PLANA_0002108 .
obo:PLANA_0000485 a rdfs:Class ;
rdfs:label "gland cell" ;
rdfs:comment "Specialized insunk epithelial cells located in the mesenchyme that participate in mucus secretion. They are characterized by elongated cell bodies with long cytoplasmic projections that terminate between, or penetrate directly throughepithelial cells and form a secretory pore at the surface." ;
rdfs:subClassOf obo:PLANA_0000100 .
obo:PLANA_0002070 a rdfs:Class ;
rdfs:label "optic nerve" ;
rdfs:comment "A neuron projection bundle that connects the retina or its analog in the eye with the brain. This includes the vertebrate optic nerve (not truly a nerve) as well as analogous structures such as the Bolwig nerve in Drosophila." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000541 .
obo:PLANA_0003724 a rdfs:Class ;
rdfs:label "dorsal region of posterior fragment" ;
rdfs:comment "The dorsal region of a fragment encompassing all or part of the posterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:GO_0007137 a rdfs:Class ;
rdfs:label "meiotic metaphase II" ;
rdfs:comment "The cell cycle phase, following prophase II, during which chromosomes become aligned on the equatorial plate of the cell as part of meiosis II." ;
rdfs:subClassOf obo:GO_0051323 , obo:GO_0098765 .
obo:PLANA_0000494 a rdfs:Class ;
rdfs:label "brain commissure" ;
rdfs:comment "any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain" ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002025 .
obo:PLANA_0000027 a rdfs:Class ;
rdfs:label "Smed sexual biotype" ;
rdfs:comment "Strains of cross-fertilizing hemaphrodites that reproduce sexually and do not undergo fission. After mating, each parent lays an egg capsule containing one or more embryos. Sexual Smed are stable diploids." ;
rdfs:subClassOf obo:PLANA_0000021 .
obo:PLANA_0003114 a rdfs:Class ;
rdfs:label "melanin pigment granule" ;
rdfs:comment "pigment granule which is part of the eumelanin" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0000414 a rdfs:Class ;
rdfs:label "pharynx pouch epithelial surface" ;
rdfs:comment "The surface of the parapharyngeal pouch facing the pharynx." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0003301 a rdfs:Class ;
rdfs:label "eye primordium" ;
rdfs:comment "This primordium develops into eye" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000131 .
obo:PLANA_0000124 a rdfs:Class ;
rdfs:label "visual system" ;
rdfs:comment "The sensory system subserving the sense of vision." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0000038 a rdfs:Class ;
rdfs:label "ventral midline" ;
rdfs:comment "The median line/ plane of bilateral symmetry along the anteroposterior axis on the ventral surface of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002102 a rdfs:Class ;
rdfs:label "synaptic vesicle" ;
rdfs:comment "Vesicles that store various neurotransmitters that are released at the synapse. The release is regulated by a voltage-dependent calcium channel. Vesicles are essential for propagating nerve impulses between neurons and are constantly recreated by the cell. [Wikipedia]" ;
rdfs:subClassOf obo:PLANA_0000526 .
obo:PLANA_0003117 a rdfs:Class ;
rdfs:label "parapharyngeal cell" ;
rdfs:comment "cell which is part of the parapharyngeal region" .
obo:PLANA_0007520 a rdfs:Class ;
rdfs:label "dorsal-ventral axis of the whole animal" ;
rdfs:comment "Axis that runs along the short axis of the animal, perpendicular to the anteroposterior axis, running from the dorsal (back) side of the animal to the ventral (belly) side of the animal. This axis splits anterior and posterior regions of the animal to either side." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000379 a rdfs:Class ;
rdfs:label "dorsal surface" ;
rdfs:comment "Anatomical surface that located on the dorsal side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0000209 a rdfs:Class ;
rdfs:label "obsolete developing anatomical structure" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000468 a rdfs:Class ;
rdfs:label "gastrodermal plexus" ;
rdfs:comment "A thin net of single nerve fibers located around the gut." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000492 .
obo:PLANA_0000088 a rdfs:Class ;
rdfs:label "renal system" ;
rdfs:comment "The renal system is an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PATO_0000140 a rdfs:Class ;
rdfs:label "position" ;
rdfs:comment "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." ;
rdfs:subClassOf obo:PATO_0001018 .
obo:PLANA_0000404 a rdfs:Class ;
rdfs:label "pharynx lumen" ;
rdfs:comment "Anatomical space enclosed by the pharynx inner epithelium." ;
rdfs:subClassOf obo:BFO_0000141 , obo:PLANA_0002053 .
obo:PLANA_0000509 a rdfs:Class ;
rdfs:label "intracellular part" ;
rdfs:comment "Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." ;
rdfs:subClassOf obo:GO_0005575 .
obo:PLANA_0003731 a rdfs:Class ;
rdfs:label "posterior region of lateral fragment" ;
rdfs:comment "The posterior region of a fragment derived from an amputation parallel to or along any edge, which overlaps the lateral region, dorso-lateral region, ventro-lateral region, antero-lateral margin, lateral margin, ventro-lateral margin, postero-lateral margin, dorso-lateral margin, antero-lateral region, postero-lateral region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002087 a rdfs:Class ;
rdfs:label "primitive gut" ;
rdfs:comment "Four large phagocytic cells associated with the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002120 .
obo:PLANA_0003607 a rdfs:Class ;
rdfs:label "lateral fragment" ;
rdfs:comment "A fragment derived from an amputation parallel to or along any edge, which overlaps the lateral region, dorso-lateral region, ventro-lateral region, antero-lateral margin, lateral margin, ventro-lateral margin, postero-lateral margin, dorso-lateral margin, antero-lateral region, postero-lateral region. [SMR: a fragment that encompasses the side of the animal, not necessarily longituduinal, or parallel to the midline]" ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0000537 a rdfs:Class ;
rdfs:label "ribosome" ;
rdfs:comment "An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. [ https://www.worldcat.org/search?q=bn%3A0198506732 ]" ;
rdfs:subClassOf obo:PLANA_0000519 .
obo:PLANA_0003229 a rdfs:Class ;
rdfs:label "S phase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic S phase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:PLANA_0003215 a rdfs:Class ;
rdfs:label "S phase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic S phase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:PLANA_0007519 a rdfs:Class ;
rdfs:label "anterior-posterior axis of the whole animal" ;
rdfs:comment "Axis that runs along the long axis of the animal from anterior (head) to posterior (tail). It is perpendicular to the dorsoventral axis and as such, it splits dorsal and ventral regions of the animal to either side." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000080 a rdfs:Class ;
rdfs:label "dorso-lateral region" ;
rdfs:comment "Anatomical region that overlaps the dorsal and lateral regions of a body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000079 , obo:BSPO_0000082 .
obo:PLANA_0000478 a rdfs:Class ;
rdfs:label "pharynx musculature" ;
rdfs:comment "The total musculature within the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000559 a rdfs:Class ;
rdfs:label "unipolar neuron" ;
rdfs:comment "Neuron with one neurite that extends from the cell body." ;
rdfs:subClassOf obo:PLANA_0000552 .
obo:PLANA_0000065 a rdfs:Class ;
rdfs:label "flame cell" ;
rdfs:comment "Terminal structure of the protonephridia unit, capping the proximal tubules. Flame cells are defined by the filtration weir‚ or filtration diaphragm, which consists of closely apposed strands of cytoplasm surrounding a central cilia bundle, and by numerous microvilli between weir and cilia. Positive for acetyated tubulin." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000119 .
obo:PLANA_0003254 a rdfs:Class ;
rdfs:label "meiosis II stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiosis II cell cycle phase" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:PLANA_0003103 a rdfs:Class ;
rdfs:label "eye cell" ;
rdfs:comment "cell which is part of the eye" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0002061 a rdfs:Class ;
rdfs:label "neurite" ;
rdfs:comment "Cell appendage of the neuron which includes the axon and the dendrite." ;
rdfs:subClassOf obo:PLANA_0000501 .
obo:PLANA_0002079 a rdfs:Class ;
rdfs:label "pore" ;
rdfs:comment "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." ;
rdfs:subClassOf obo:UBERON_0002553 .
obo:PLANA_0000016 a rdfs:Class ;
rdfs:label "pharynx" ;
rdfs:comment "A plicate and protrusible organ that is the sole point of entry and exit for the Triclad gut. It contains epithelial, muscular, secretory and neuronal cell types." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0002011 a rdfs:Class ;
rdfs:label "brain visual center" ;
rdfs:comment "Region of the cephalic ganglia innervated by the optic nerve (posterior-projecting photoreceptor neuron fasiculated axons)." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:IAO_0000578 a rdfs:Class ;
rdfs:label "centrally registered identifier"@en ;
rdfs:comment "An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs."@en ;
rdfs:subClassOf obo:IAO_0020000 .
obo:OBI_0000312 a rdf:Property ;
rdfs:label "is_specified_output_of"@en ;
rdfs:comment "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en ;
rdfs:domain obo:BFO_0000002 ;
rdfs:range obo:OBI_0000011 ;
rdfs:subPropertyOf obo:RO_0000056 .
obo:PLANA_0002046 a rdfs:Class ;
rdfs:label "incision" ;
rdfs:comment "A surgical cut that breaches the epidermis, made with a defined edge." ;
rdfs:subClassOf obo:PLANA_0002026 .
obo:PLANA_0004005 a rdfs:Class ;
rdfs:label "regenerating anterior fragment" ;
rdfs:comment "a anterior fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003605 .
obo:PLANA_0003204 a rdfs:Class ;
rdfs:label "metaphase neoblast" ;
rdfs:comment "neoblast undergoing mitotic metaphase" ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0000113 a rdfs:Class ;
rdfs:label "tissue" ;
rdfs:comment "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." ;
rdfs:subClassOf obo:PLANA_0000427 .
obo:PLANA_0000489 a rdfs:Class ;
rdfs:label "obsolete anatomical line" ;
rdfs:comment "replacing with CARO term" .
obo:GO_0000003 a rdfs:Class ;
rdfs:label "reproduction" ;
rdfs:comment "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms." ;
rdfs:subClassOf obo:GO_0008150 .
obo:PLANA_0000496 a rdfs:Class ;
rdfs:label "obsolete anatomical boundary" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0000425 a rdfs:Class ;
rdfs:label "obsolete definitive anatomical structure" ;
rdfs:comment "extra layer of complexity not needed upon further examination" .
obo:PLANA_0002022 a rdfs:Class ;
rdfs:label "chromosome arm" ;
rdfs:comment "Under the microscope chromosomes appear as thin, thread-like structures. They all have a short arm and long arm separated by a primary constriction called the centromere. The short arm is designated as p and the long arm as q." ;
rdfs:subClassOf obo:PLANA_0002121 .
obo:GO_0007139 a rdfs:Class ;
rdfs:label "meiotic telophase II" ;
rdfs:comment "The cell cycle phase which follows anaphase II of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." ;
rdfs:subClassOf obo:GO_0051326 , obo:GO_0098765 .
obo:GO_0051318 a rdfs:Class ;
rdfs:label "G1 phase" ;
rdfs:comment "The cell cycle 'gap' phase which is the interval between the completion of DNA segregation (usually by mitosis or meiosis) and the beginning of DNA synthesis." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0002080 a rdfs:Class ;
rdfs:label "post-meiotic germ cell" ;
rdfs:comment "A haploid gamete undergoing terminal differentiation." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000227 .
obo:PLANA_0002130 a rdfs:Class ;
rdfs:label "chemical wound" ;
rdfs:comment "An intentional wound produced by non-autonomous chemical means." ;
rdfs:subClassOf obo:PLANA_0002108 .
obo:BFO_0000020 a rdfs:Class ;
rdfs:label "specifically dependent continuant"@en ;
rdfs:comment "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en ;
rdfs:subClassOf obo:BFO_0000002 .
obo:PLANA_0004503 a rdfs:Class ;
rdfs:label "adult hermaphrodite" ;
rdfs:comment "A fully formed, sexually mature organism that reproduces through cross-fertilization." ;
rdfs:subClassOf obo:UBERON_0000105 .
obo:PLANA_0000098 a rdfs:Class ;
rdfs:label "zygote" ;
rdfs:comment "Diploid cell resulting from the fusion of male and female gametes at fertilization. [The_Dictionary_of_Cell_and_Molecular_Biology:Third_Edition ]." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000136 .
obo:PLANA_0002039 a rdfs:Class ;
rdfs:label "fission" ;
rdfs:comment "A form of asexual reproduction resulting in self-amputation of posterior tissue, generating an anterior fragment and a fission fragment." ;
rdfs:subClassOf obo:PLANA_0002108 .
obo:PLANA_0002050 a rdfs:Class ;
rdfs:label "linear amputation" ;
rdfs:comment "An amputation performed with a transverse, oblique or longitudinal cut." ;
rdfs:subClassOf obo:PLANA_0002003 .
obo:PLANA_0003801 a rdfs:Class ;
rdfs:label "posterior photoreceptor neuron" ;
rdfs:comment "photoreceptor neuron is contained in the posterior region of the eye" ;
rdfs:subClassOf obo:PLANA_0000017 .
obo:PLANA_0000049 a rdfs:Class ;
rdfs:label "digestive system" ;
rdfs:comment "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:GO_0051329 a rdfs:Class ;
rdfs:label "mitotic interphase" ;
rdfs:comment "The cell cycle phase following cytokinesis which begins with G1 phase, proceeds through S phase and G2 phase and ends when mitotic prophase begins. During interphase the cell readies itself for mitosis and the replication of its DNA occurs." ;
rdfs:subClassOf obo:GO_0051325 , obo:GO_0098763 .
obo:BSPO_0000019 a rdfs:Class ;
rdfs:label "horizontal plane" ;
rdfs:comment "Anatomical plane that divides bilateral body into dorsal and ventral parts." ;
rdfs:subClassOf obo:BSPO_0000400 .
obo:PLANA_0000519 a rdfs:Class ;
rdfs:label "intracellular non-membrane-bounded organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes" ;
rdfs:subClassOf obo:PLANA_0000518 , obo:PLANA_0000531 .
obo:PLANA_0000023 a rdfs:Class ;
rdfs:label "embryonic pharynx" ;
rdfs:comment "An innervated, muscular pump that ingests yolk cells into the gut cavity. The embryonic pharynx is an extraembryonic tissue that forms during Stage 2, functions during Stages 3-5, and degenerates during Stages 6-7." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002120 .
obo:PLANA_0000205 a rdfs:Class ;
rdfs:label "oviduct" ;
rdfs:comment "Ciliated tubes adjacent to the ventral nerve cords, adjoining the tuba and the bursal canal, that transport fertilized oocytes to the genital atrium." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002089 .
obo:PLANA_0000211 a rdfs:Class ;
rdfs:label "primitive ectoderm cell" ;
rdfs:comment "Primitive ectoderm cells differentiate from the blastomere population, exit the cell cycle and interact to boud the embryo during Stage 2." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 , obo:PLANA_0004518 .
obo:PLANA_0000008 a rdfs:Class ;
rdfs:label "Stage 8" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 13 - 15 days post-egg capsule deposition at 20˚C. Organogenesis and organ maturation continues. Hatching." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:GO_0022414 a rdfs:Class ;
rdfs:label "reproductive process" ;
rdfs:comment "A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents." ;
rdfs:subClassOf obo:GO_0008150 .
obo:PLANA_0003719 a rdfs:Class ;
rdfs:label "posterior region of postpharyngeal fragment" ;
rdfs:comment "The posterior region of a fragment derived from two postpharyngeal amputations, removing the anterior region and the tail tip." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003305 a rdfs:Class ;
rdfs:label "gonad primoridium" ;
rdfs:comment "This primordium develops into gonad" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000131 .
obo:BSPO_0000028 a rdfs:Class ;
rdfs:label "postero-lateral region" ;
rdfs:comment "Anatomical region that overlaps the posterior and lateral regions of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000072 , obo:BSPO_0000082 .
obo:PLANA_0007508 a rdfs:Class ;
rdfs:label "obsolete extracellular component" ;
rdfs:comment "choosing to use UBERON:0000476, acellular anatomical structure instead" .
obo:GO_0000093 a rdfs:Class ;
rdfs:label "mitotic telophase" ;
rdfs:comment "The cell cycle phase which follows anaphase during M phase of mitosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." ;
rdfs:subClassOf obo:GO_0051326 .
obo:PLANA_0003106 a rdfs:Class ;
rdfs:label "adhesion gland cell" ;
rdfs:comment "cell which is part of the adhesion gland" .
obo:PLANA_0007564 a rdfs:Class ;
rdfs:label "sexual organism" ;
rdfs:comment "An individual member of the sexual biotype of Schmidtea mediterranea." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000136 .
obo:PLANA_0000548 a rdfs:Class ;
rdfs:label "efferent neuron" ;
rdfs:comment "A neuron which sends impulses peripherally to activate muscles or secretory cells." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0003226 a rdfs:Class ;
rdfs:label "anaphase spermatogonia" ;
rdfs:comment "spermatogonium undergoing mitotic anaphase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:PLANA_0003720 a rdfs:Class ;
rdfs:label "dorsal region of anterior fragment" ;
rdfs:comment "The dorsal region of a fragment encompassing all or part of the anterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000418 a rdfs:Class ;
rdfs:label "head region" ;
rdfs:comment "The head is the anterior-most division of the body [GO]. A three dimensional compartment bounded by the anterior margin or the head and the posterior boundary of the cephalic ganglia (brain)." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000102 .
obo:PLANA_0000054 a rdfs:Class ;
rdfs:label "dorsal region of the epidermis" ;
rdfs:comment "Single cell layer of dorsal, post-mitotic, epithelial cells containing the dorsal stripe." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003219 a rdfs:Class ;
rdfs:label "anaphase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic anaphase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:BSPO_0000017 a rdfs:Class ;
rdfs:label "left-right axis" ;
rdfs:comment "An axis that bisects an organism from left to right sides of body, through a sagittal plane." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:PLANA_0002016 a rdfs:Class ;
rdfs:label "cephalic ganglia neuron" ;
rdfs:comment "A central nervous system neuron located within the planarian brain." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000562 .
obo:GO_0098762 a rdfs:Class ;
rdfs:label "meiotic cell cycle phase" ;
rdfs:comment "One of the distinct periods or stages into which the meiotic cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0000429 a rdfs:Class ;
rdfs:label "neoblast" ;
rdfs:comment "A heterogeneous population of pluripotent, somatic adult stem cells and lineage primed progenitors that are required for maintenance and regeneration of all cell types in planaria, including the germline." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000120 , obo:PLANA_0000121 .
obo:PLANA_0003708 a rdfs:Class ;
rdfs:label "dorsal region of tail fragment" ;
rdfs:comment "The dorsal region of a fragment derived from a postpharyngeal amputation encompassing the tail." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003237 a rdfs:Class ;
rdfs:label "G2 phase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:PLANA_0000222 a rdfs:Class ;
rdfs:label "spermatid" ;
rdfs:comment "A male germ cell that develops from the haploid secondary spermatocytes. Without further division, spermatids undergo structural changes and give rise to spermatozoa." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000228 .
obo:PLANA_0007537 a rdfs:Class ;
rdfs:label "obsolete brain" ;
rdfs:comment "replacing duplicate PLANA term" .
obo:PLANA_0000239 a rdfs:Class ;
rdfs:label "oogonial cell" ;
rdfs:comment "An undifferentiated germ cell that proliferates rapidly and gives rise to oocytes." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000120 , obo:PLANA_0000229 .
obo:PLANA_0000012 a rdfs:Class ;
rdfs:label "neural progenitor cell" ;
rdfs:comment "Neoblasts and their differentiating daughters implicated in maintenance and regeneration of different tissues in the nervous system." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:GO_0071840 a rdfs:Class ;
rdfs:label "cellular component organization or biogenesis" ;
rdfs:comment "A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component." ;
rdfs:subClassOf obo:GO_0009987 .
obo:PLANA_0002091 a rdfs:Class ;
rdfs:label "rhabdome" ;
rdfs:comment "The light sensing structure consisting of photoreceptor neuron dendrites that project into the optic lumen and show close associations with eumelanin-containing pigment cup cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:BSPO_0000010 a rdfs:Class ;
rdfs:label "anatomical axis" ;
rdfs:comment "A straight line through space, intersecting an anatomical entity." ;
rdfs:subClassOf obo:CARO_0000008 .
obo:PLANA_0003208 a rdfs:Class ;
rdfs:label "S phase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic S phase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:PLANA_0007553 a rdfs:Class ;
rdfs:label "lateral nerve" ;
rdfs:comment "A nerve extending laterally from the ventral nerve cord that innervates the submuscular plexus." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000113 .
obo:PLANA_0007550 a rdfs:Class ;
rdfs:label "serotonergic neural progenitor cell" ;
rdfs:comment "piwi-1+, lhx1/5-1+, pitx+ progenitor neoblasts required for specification of tph+ serotonergic neurons." ;
rdfs:subClassOf obo:PLANA_0000012 , obo:PLANA_0000429 .
obo:GO_0051330 a rdfs:Class ;
rdfs:label "meiotic G1 phase" ;
rdfs:comment "The cell cycle 'gap' phase which is the interval between the completion of DNA segregation by meiosis and the beginning of DNA synthesis." ;
rdfs:subClassOf obo:GO_0051318 .
obo:PLANA_0000461 a rdfs:Class ;
rdfs:label "lateral branch" ;
rdfs:comment "Nerve branches that extend from the lateral side of each cephalic ganglia lobe. Each lobe has nine lateral branches which terminate in sensory organs. Evidence suggests they play a role in chemosensation." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000106 a rdfs:Class ;
rdfs:label "ciliated epithelial cell" ;
rdfs:comment "An epithelial cell that has cilia." ;
rdfs:subClassOf obo:PLANA_0000100 .
obo:PLANA_0000059 a rdfs:Class ;
rdfs:label "embryonic gut cell" ;
rdfs:comment "Dispersed, phagocytic gut cells that appear during Stage 4 and ultimately generate a honeycomb-like lattice surrounding the central gut cavity in Stage 5 embryos. Early embryonic gut cell specific transcripts are expressed from Stage 4-6, and are downregulated during Stage 7." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0004518 .
obo:PLANA_0002027 a rdfs:Class ;
rdfs:label "dendrite" ;
rdfs:comment "A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body." ;
rdfs:subClassOf obo:PLANA_0000501 .
obo:PLANA_0004001 a rdfs:Class ;
rdfs:label "regenerating trunk fragment" ;
rdfs:comment "a trunk fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003601 .
obo:PLANA_0002139 a rdfs:Class ;
rdfs:label "derived cell population" ;
rdfs:comment "Cells isolated from dissociated planarian tissue." ;
rdfs:subClassOf obo:UBERON_0000465 .
obo:PLANA_0003248 a rdfs:Class ;
rdfs:label "pachytene stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing pachytene" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:GO_0007049 a rdfs:Class ;
rdfs:label "cell cycle" ;
rdfs:comment "The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division." ;
rdfs:subClassOf obo:GO_0009987 .
obo:PLANA_0007547 a rdfs:Class ;
rdfs:label "anterior pole progenitor cell" ;
rdfs:comment "piwi-1+, foxD+, prep+ progenitor neoblasts required for formation of the anterior pole." ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0000237 a rdfs:Class ;
rdfs:label "round spermatid" ;
rdfs:comment "A cyst of 8 interconnected spermatocytes undergoes meiosis, producing 32 haploid round spermatids. Round spermatids express protein kinase A, andundergo morphogenesis to produce mature sperm." ;
rdfs:subClassOf obo:PLANA_0000222 .
obo:PLANA_0000131 a rdfs:Class ;
rdfs:label "primordium" ;
rdfs:comment "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue." ;
rdfs:subClassOf obo:UBERON_0007567 .
obo:PLANA_0002082 a rdfs:Class ;
rdfs:label "premeiotic germ cell" ;
rdfs:comment "A diploid germline stem cell or transit amplifying germ cell that has not committed to undergoing meiotic DNA replication, reductive divisions or terminal differentiation." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000227 .
obo:IAO_0000102 a rdfs:Class ;
rdfs:label "data about an ontology part"@en ;
rdfs:comment "Data about an ontology part is a data item about a part of an ontology, for example a term"@en ;
rdfs:subClassOf obo:IAO_0000027 .
obo:PLANA_0000516 a rdfs:Class ;
rdfs:label "obsolete cytoskeleton organization" ;
rdfs:comment "term is not needed." .
obo:PLANA_0000419 a rdfs:Class ;
rdfs:label "prepharyngeal region" ;
rdfs:comment "Region of the juvenile or adult animal between the posterior end of the cephalic ganglia and the anterior end of the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:PLANA_0003222 a rdfs:Class ;
rdfs:label "S phase spermatogonium" ;
rdfs:comment "spermatogonium undergoing mitotic S phase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:PLANA_0002058 a rdfs:Class ;
rdfs:label "melanosome" ;
rdfs:comment "A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000527 .
obo:BSPO_0000094 a rdfs:Class ;
rdfs:label "dorsal/ventral compartment boundary" ;
rdfs:subClassOf obo:BSPO_0000092 .
obo:PLANA_0000080 a rdfs:Class ;
rdfs:label "peripheral nervous system" ;
rdfs:comment "A major division of the nervous system that contains nerves which connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands." ;
rdfs:subClassOf obo:PLANA_0000025 .
obo:PLANA_0007528 a rdfs:Class ;
rdfs:label "glial cell" ;
rdfs:comment "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu, guide neuronal migration during development, and exchange metabolites with neurons." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000561 .
obo:PLANA_0003726 a rdfs:Class ;
rdfs:label "anterior region of posterior fragment" ;
rdfs:comment "The anterior region of a fragment encompassing all or part of the posterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002008 a rdfs:Class ;
rdfs:label "axon" ;
rdfs:comment "The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter." ;
rdfs:subClassOf obo:PLANA_0000501 .
obo:PLANA_0002097 a rdfs:Class ;
rdfs:label "specialized neoblast" ;
rdfs:comment "A presumptive progenitor cell that expresses both pan-neoblast markers and pro-differentiation gene(s), frequently developmental transcription factors, implicated in lineage commitment and tissue-specific differentiation programs." ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0003715 a rdfs:Class ;
rdfs:label "posterior region of prepharyngeal fragment" ;
rdfs:comment "The posterior region of a fragment derived from two prepharyngeal amputations, removing the head and posterior regions of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000028 a rdfs:Class ;
rdfs:label "Category 2 cell" ;
rdfs:comment "Post-mitotic, mesenchymally located epidermal progenitors downstream of the zeta neoblasts." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000033 , obo:PLANA_0002095 .
obo:PLANA_0000030 a rdfs:Class ;
rdfs:label "midline" ;
rdfs:comment "The median line/ plane of bilateral symmetry along the anteroposterior axis." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000102 .
obo:PLANA_0000465 a rdfs:Class ;
rdfs:label "pharynx nerve plexus" ;
rdfs:comment "Plexus of nerves located in the pharynx comprised of inner and outer wall rings." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000492 .
obo:GO_0000237 a rdfs:Class ;
rdfs:label "leptotene" ;
rdfs:comment "The cell cycle phase which is the first stage of prophase I in meiosis, and during which the chromosomes first become visible." ;
rdfs:subClassOf obo:GO_0098764 .
obo:PLANA_0003601 a rdfs:Class ;
rdfs:label "trunk fragment" ;
rdfs:comment "A fragment derived from pre- and post-pharyngeal amputations, encompassing the pharynx and parapharyngeal region." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:GO_0051320 a rdfs:Class ;
rdfs:label "S phase" ;
rdfs:comment "The cell cycle phase, following G1, during which DNA synthesis takes place." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0007514 a rdfs:Class ;
rdfs:label "rough endoplasmic reticulum" ;
rdfs:comment "Network of interconnected, flattened, and/or tubular membrane, known as cisternae. This membrane is contiguous with the outer nuclear membrane. The endoplasmic reticulum is involved in both protein and lipid synthesis. The outer surface is studded with protein-synthesizing particles known as ribosomes." ;
rdfs:subClassOf obo:PLANA_0007513 .
obo:PLANA_0000207 a rdfs:Class ;
rdfs:label "sperm duct" ;
rdfs:comment "A network of tubes that transport sperm from the testes to the seminal vesicles. Tubes connect each testis to ducts that run along the ventral nerve cords. The ducts bifurcate immediately posterior to the pharynx, where they connect to the seminal vesicles." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002089 .
obo:PLANA_0002071 a rdfs:Class ;
rdfs:label "pharynx outer epidermal cell" ;
rdfs:comment "Heavily ciliated, insunk epithelial cells bounding the outside of the pharynx. Outer pharynx epithelial cell nuclei are positioned beneath the pharynx musculature." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 , obo:PLANA_0002032 .
obo:PLANA_0003702 a rdfs:Class ;
rdfs:label "anterior region of head fragment" ;
rdfs:comment "The anterior region of a fragment derived from a prepharyngeal amputation encompassing the head." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000527 a rdfs:Class ;
rdfs:label "intracellular membrane-bounded organelle" ;
rdfs:comment "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." ;
rdfs:subClassOf obo:PLANA_0000518 , obo:PLANA_0000526 .
obo:PLANA_0003600 a rdfs:Class ;
rdfs:label "head fragment" ;
rdfs:comment "A fragment derived from a prepharyngeal amputation encompassing the head." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:BSPO_0000085 a rdfs:Class ;
rdfs:label "ventro-lateral region" ;
rdfs:comment "Anatomical region that overlaps the ventral and lateral regions of a body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000082 , obo:BSPO_0000084 .
obo:PLANA_0000041 a rdfs:Class ;
rdfs:label "aboral hemisphere" ;
rdfs:comment "Stage 3-5 embryo hemisphere centered around the pole opposite the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000423 .
obo:PLANA_0000035 a rdfs:Class ;
rdfs:label "Category 3 cell" ;
rdfs:comment "Post-mitotic, mesenchymally located epidermal progenitors downstream of the Category 2 cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000033 , obo:PLANA_0002095 .
obo:PLANA_0000521 a rdfs:Class ;
rdfs:label "bounding membrane of organelle" ;
rdfs:comment "Examples include the outer membranes of double membrane bound organelles such as mitochondria as well as the bounding membranes of single-membrane bound organelles such as lysosomes." ;
rdfs:subClassOf obo:PLANA_0000520 .
obo:PLANA_0000006 a rdfs:Class ;
rdfs:label "Stage 6" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 7 - 9 days post-egg capsule deposition at 20˚C. Organogenesis and morphogenesis. Definitive organ formation. Temporary embryonic cell types degenerate. Embryo elongation." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:PLANA_0000121 a rdfs:Class ;
rdfs:label "stem cell" ;
rdfs:comment "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." ;
rdfs:subClassOf obo:PLANA_0000499 .
obo:PLANA_0000475 a rdfs:Class ;
rdfs:label "pharynx inner longitudinal muscle cell" ;
rdfs:comment "Pharynx muscle fibers running anteroposterior which lie beneath both the inner circular muscle fibers and the apical, ciliated portion of the epithium lining the lumenal surface." ;
rdfs:subClassOf obo:PLANA_0000241 .
obo:PLANA_0000486 a rdfs:Class ;
rdfs:label "secretory pore" ;
rdfs:comment "The opening by which the gland cells secrete mucus to the exterior of the animal." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002079 .
obo:PLANA_0002019 a rdfs:Class ;
rdfs:label "chemosensory neuron" ;
rdfs:comment "Any neuron that capable of some detection of chemical stimulus involved in sensory perception." ;
rdfs:subClassOf obo:PLANA_0000552 .
obo:PLANA_0002105 a rdfs:Class ;
rdfs:label "telomere" ;
rdfs:comment "The terminal region of a linear chromosome that includes the telomeric DNA repeats and associated proteins." ;
rdfs:subClassOf obo:PLANA_0002121 .
obo:PLANA_0007561 a rdfs:Class ;
rdfs:label "head margin" ;
rdfs:comment "Peripheral region of the head." ;
rdfs:subClassOf obo:PLANA_0000043 .
obo:PLANA_0004006 a rdfs:Class ;
rdfs:label "regenerating posterior fragment" ;
rdfs:comment "a posterior fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003606 .
obo:PLANA_0003233 a rdfs:Class ;
rdfs:label "anaphase oogonial cell" ;
rdfs:comment "oogonial cell undergoing mitotic anaphase" ;
rdfs:subClassOf obo:PLANA_0000239 .
obo:PLANA_0003704 a rdfs:Class ;
rdfs:label "dorsal region of trunk fragment" ;
rdfs:comment "The dorsal region of a fragment derived from pre- and post-pharyngeal amputations, encompassing the pharynx and parapharyngeal region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002138 a rdfs:Class ;
rdfs:label "FACS sorted cell population" ;
rdfs:comment "Any number of cells from dissociated planarian tissue sorted via a FACS sorter for any parameter." ;
rdfs:subClassOf obo:PLANA_0002139 .
obo:PLANA_0000046 a rdfs:Class ;
rdfs:label "clonogenic neoblast" ;
rdfs:comment "Pluripotent piwi-1+ stem cells that self-renew, form expanding colonies and produce differentiating daughters that contribute to multiple organ systems. cNeoblasts are predicted to be broadly distributed across the anteroposterior axis of the adult worm." ;
rdfs:subClassOf obo:PLANA_0000429 , obo:PLANA_0002095 .
obo:PATO_0000001 a rdfs:Class ;
rdfs:label "quality" ;
rdfs:comment "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" ;
rdfs:subClassOf obo:BFO_0000020 .
obo:PLANA_0000142 a rdfs:Class ;
rdfs:label "posterior region of the whole animal" ;
rdfs:comment "Three dimensional compartment along the anteroposterior axis that is closer to the tail rather than the head, from the anterior boundary of the pharyngeal pouch to the tip of the tail." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002031 a rdfs:Class ;
rdfs:label "embryonic gut" ;
rdfs:comment "A cryptic digestive cavity comprised of phagocytic embryonic gut cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002120 .
obo:PLANA_0002069 a rdfs:Class ;
rdfs:label "ommochrome pigment cell" ;
rdfs:comment "Parenchymal cells that synthesize and contain brown ommonchrome pigment." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002075 .
obo:BSPO_0000030 a rdfs:Class ;
rdfs:label "postero-dorsal region" ;
rdfs:comment "Anatomical region that overlaps the posterior and dorsal regions of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000072 , obo:BSPO_0000079 .
obo:PLANA_0003737 a rdfs:Class ;
rdfs:label "ventral region of plug fragment" ;
rdfs:comment "The ventral region of a 3D piece of tissue, usually though the whole depth of the animal encompassing both dorsal and ventral sides, often made with a biopsy punch." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003713 a rdfs:Class ;
rdfs:label "ventral region of prepharyngeal fragment" ;
rdfs:comment "The ventral region of a fragment derived from two prepharyngeal amputations, removing the head and posterior regions of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000227 a rdfs:Class ;
rdfs:label "germ cell" ;
rdfs:comment "1. A gamete (as an egg or sperm cell) or one of its antecedent cells. 2. A mature male or female germ cell usually possessing a haploid chromosome set and capable of initiating formation of a new diploid individual by fusion with a gamete of the opposite sex." ;
rdfs:subClassOf obo:PLANA_0000499 .
obo:PLANA_0000506 a rdfs:Class ;
rdfs:label "cell junction" ;
rdfs:comment "A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix." ;
rdfs:subClassOf obo:PLANA_0000505 .
obo:PLANA_0003608 a rdfs:Class ;
rdfs:label "longitudinal fragment" ;
rdfs:comment "a fragment derived from an amputation parallel to the midline." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0003741 a rdfs:Class ;
rdfs:label "ventral region of wedge fragment" ;
rdfs:comment "The ventral region of a piece of tissue removed from the lateral margin at any given point that extendes interiorly to more medial structures." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000535 a rdfs:Class ;
rdfs:label "heterochromatin" ;
rdfs:comment "A compact and highly condensed form of chromatin." ;
rdfs:subClassOf obo:PLANA_0000534 .
obo:PLANA_0000084 a rdfs:Class ;
rdfs:label "posterior primary gut branch" ;
rdfs:comment "The primary gut branches of the triclad gut lateral and posterior to the pharynx and pharyngeal pouch." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002086 .
obo:PATO_0001955 a rdfs:Class ;
rdfs:label "cuneate" ;
rdfs:comment "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base." ;
rdfs:subClassOf obo:PATO_0001875 .
obo:PLANA_0000240 a rdfs:Class ;
rdfs:label "body wall musculature" ;
rdfs:comment "Any collection of muscles that is part of a body wall [Automatically generated definition]." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PLANA_0000500 a rdfs:Class ;
rdfs:label "obsolete cell part" ;
rdfs:comment "PLANA:0000500 child terms moved to cellular component (GO:0005575) term and we think better serves interoperability and searchability" .
obo:PLANA_0002123 a rdfs:Class ;
rdfs:label "chromosomal_structural_element" ;
rdfs:comment "structural element of a chromosome, for example, a telomere and a centromere" ;
rdfs:subClassOf obo:PLANA_0002121 .
obo:PLANA_0004002 a rdfs:Class ;
rdfs:label "regenerating tail fragment" ;
rdfs:comment "a tail fragment that is regenerating" ;
rdfs:subClassOf obo:PLANA_0002133 , obo:PLANA_0003602 .
obo:PLANA_0003803 a rdfs:Class ;
rdfs:label "anterior muscle cell" ;
rdfs:comment "muscle cell is contained in the anterior region" ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:PLANA_0007503 a rdfs:Class ;
rdfs:label "sagittal plane of the whole animal" ;
rdfs:comment "Anatomical plane which divides the body into right and left parts. This plane passes through the midline at the midline but does not always the midline." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0002086 a rdfs:Class ;
rdfs:label "primary gut branch" ;
rdfs:comment "The largest branch of the triclad intestine. It is comprised of the gastrodermis, a columnar epithelium, surrounded by basal lamina and visceral musculature." ;
rdfs:subClassOf obo:PLANA_0002119 .
obo:PLANA_0003110 a rdfs:Class ;
rdfs:label "pharynx neuron" ;
rdfs:comment "neuron which is part of the pharynx" ;
rdfs:subClassOf obo:BFO_0000004 .
obo:PLANA_0003402 a rdfs:Class ;
rdfs:label "ovary lumen" ;
rdfs:comment "lumen which is part of the ovary" ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002053 .
obo:PLANA_0000233 a rdfs:Class ;
rdfs:label "copulatory bursa" ;
rdfs:comment "An organ that receives and stores sperm from mating partners." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002089 .
obo:PLANA_0003735 a rdfs:Class ;
rdfs:label "posterior region of longitudinal fragment" ;
rdfs:comment "The posterior region of a fragment derived from an amputation parallel to the midline." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000384 a rdfs:Class ;
rdfs:label "ventral surface" ;
rdfs:comment "Anatomical surface that is located on the ventral side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0002004 a rdfs:Class ;
rdfs:label "anterior gut branch" ;
rdfs:comment "A branch of the triclad gut located anterior to the pharynx." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002119 .
obo:PLANA_0003251 a rdfs:Class ;
rdfs:label "meiotic metaphase 1 stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic metaphase I" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:BSPO_0000079 a rdfs:Class ;
rdfs:label "dorsal region" ;
rdfs:comment "Anatomical region dorsally located on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0000491 a rdfs:Class ;
rdfs:label "obsolete plane of autonomy" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0002093 a rdfs:Class ;
rdfs:label "secretory duct" ;
rdfs:comment "A tubular structure that transports secreted or excreted substances." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000113 .
obo:GO_0051331 a rdfs:Class ;
rdfs:label "meiotic G2 phase" ;
rdfs:comment "The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation by meiosis." ;
rdfs:subClassOf obo:GO_0051319 .
obo:PLANA_0003403 a rdfs:Class ;
rdfs:label "flame cell lumen" ;
rdfs:comment "lumen which is part of the flame cell" ;
rdfs:subClassOf obo:PLANA_0002053 , obo:PLANA_0003400 .
obo:GO_0000085 a rdfs:Class ;
rdfs:label "mitotic G2 phase" ;
rdfs:comment "The cell cycle 'gap' phase which is the interval between the completion of DNA synthesis and the beginning of DNA segregation by mitosis." ;
rdfs:subClassOf obo:GO_0051319 .
obo:PLANA_0002053 a rdfs:Class ;
rdfs:label "lumen" ;
rdfs:comment "The cavity or channel within a tube or tubular organ such as a blood vessel or the intestine." ;
rdfs:subClassOf obo:UBERON_0002553 .
obo:PLANA_0002112 a rdfs:Class ;
rdfs:label "Xins cell" ;
rdfs:comment "A sorted cell population of irradiation-insensitive cells that contains a variety of post-mitotic, differentiated cell types." ;
rdfs:subClassOf obo:PLANA_0000499 , obo:PLANA_0002138 .
obo:PLANA_0003200 a rdfs:Class ;
rdfs:label "G1 phase neoblast" ;
rdfs:comment "neoblast undergoing mitotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0000002 a rdfs:Class ;
rdfs:label "Stage 2" ;
rdfs:comment "A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 2 - 3 days post-egg capsule deposition at 20˚C. Sphere formation. A fraction of the blastomeres differentiate into temporary embryonic tissues that provide form and function to the embryo. Undifferentiated blastomeres remain in the embryonic wall." ;
rdfs:subClassOf obo:UBERON_0000068 .
obo:BFO_0000003 a rdfs:Class ;
rdfs:label "occurrent"@en ;
rdfs:comment "An entity that has temporal parts and that happens, unfolds or develops through time."@en ;
rdfs:subClassOf obo:BFO_0000001 .
obo:PLANA_0000510 a rdfs:Class ;
rdfs:label "cytoplasm" ;
rdfs:comment "All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures" ;
rdfs:subClassOf obo:PLANA_0000509 .
obo:PLANA_0003211 a rdfs:Class ;
rdfs:label "metaphase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic metaphase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:PLANA_0002075 a rdfs:Class ;
rdfs:label "pigment cell" ;
rdfs:comment "A pigment cell is a cell that contains pigment granules." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0003240 a rdfs:Class ;
rdfs:label "anaphase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic anaphase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:BSPO_0000015 a rdfs:Class ;
rdfs:label "proximal-distal axis" ;
rdfs:comment "An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal)." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:BSPO_0000057 a rdfs:Class ;
rdfs:label "apical side" ;
rdfs:comment "Anatomical side that is located on the apical end of an organism or structure." ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:BSPO_0000373 a rdfs:Class ;
rdfs:label "apical surface" ;
rdfs:comment "Anatomical surface that is located on the apical side of the body or body part." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0000110 a rdfs:Class ;
rdfs:label "pharynx progenitor cell" ;
rdfs:comment "foxA1+ neoblasts and their post-mitotic, differentiating daughters required for maintenance and regeneration of the pharynx." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:PLANA_0003203 a rdfs:Class ;
rdfs:label "prophase neoblast" ;
rdfs:comment "neoblast undergoing mitotic prophase" ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0000480 a rdfs:Class ;
rdfs:label "pharynx outer nerve plexus" ;
rdfs:comment "Ring of the pharynx nerve plexus that is proximal to the exterior surface." ;
rdfs:subClassOf obo:PLANA_0000465 .
obo:PLANA_0000402 a rdfs:Class ;
rdfs:label "obsolete anatomical point" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0007558 a rdfs:Class ;
rdfs:label "fission plane" ;
rdfs:comment "Transverse anatomical plane, located approximately 1-2 mm from the posterior extremity of an adult animal, at which fission occurs." ;
rdfs:subClassOf obo:BSPO_0000400 .
obo:GO_0007134 a rdfs:Class ;
rdfs:label "meiotic telophase I" ;
rdfs:comment "The cell cycle phase which follows anaphase I of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts." ;
rdfs:subClassOf obo:GO_0051326 , obo:GO_0098764 .
obo:BSPO_0000074 a rdfs:Class ;
rdfs:label "basal region" ;
rdfs:comment "Anatomical region located basally on the body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 .
obo:PLANA_0000546 a rdfs:Class ;
rdfs:label "bipolar neuron" ;
rdfs:comment "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body." ;
rdfs:subClassOf obo:PLANA_0000550 .
obo:PLANA_0003504 a rdfs:Class ;
rdfs:label "testis somatic gonadal cell progenitor cell" ;
rdfs:comment "This progenitor cell develops into testis somatic gonadal cell" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:BSPO_0000014 a rdfs:Class ;
rdfs:label "apical-basal axis relative to substrate" ;
rdfs:comment "An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:PLANA_0000125 a rdfs:Class ;
rdfs:label "sensory system" ;
rdfs:comment "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." ;
rdfs:subClassOf obo:PLANA_0000114 .
obo:PLANA_0002134 a rdfs:Class ;
rdfs:label "sagittal orientation" ;
rdfs:comment "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the sagittal plane. This plane runs longitudinally and is not necessarily medial." ;
rdfs:subClassOf obo:PATO_0005024 .
obo:PLANA_0002121 a rdfs:Class ;
rdfs:label "chromosome part" ;
rdfs:comment "This is a manufactured term, that serves the purpose of allow the parts of a chromosome to have an is_a path to the root." ;
rdfs:subClassOf obo:PLANA_0000532 .
obo:PLANA_0007525 a rdfs:Class ;
rdfs:label "posterior pole" ;
rdfs:comment "Distinct posterior cluster of muscle cells located at the midline which express wnt1." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000102 .
obo:GO_0019953 a rdfs:Class ;
rdfs:label "sexual reproduction" ;
rdfs:comment "A type of reproduction that combines the genetic material of two gametes (such as a sperm or egg cell or fungal spores). The gametes have an haploid genome (with a single set of chromosomes, the product of a meiotic division) and combines with one another to produce a zygote (diploid)." ;
rdfs:subClassOf obo:GO_0000003 .
obo:PLANA_0000427 a rdfs:Class ;
rdfs:label "multicellular anatomical structure" ;
rdfs:comment "An anatomical structure that has more than one cell as a part." ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0002064 a rdfs:Class ;
rdfs:label "nuclear envelope" ;
rdfs:comment "The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space)." ;
rdfs:subClassOf obo:PLANA_0000520 .
obo:PLANA_0002042 a rdfs:Class ;
rdfs:label "genital atrium" ;
rdfs:comment "A chamber where egg capsules are formed. One or more zygotes and yolk cells produced by the vitelline glands collect in the genital atrium; glands surrounding the genital atrium produce the egg capsule shell." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0002553 .
obo:BSPO_0000400 a rdfs:Class ;
rdfs:label "anatomical plane" ;
rdfs:comment "A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions." ;
rdfs:subClassOf obo:CARO_0000010 .
obo:GO_0051325 a rdfs:Class ;
rdfs:label "interphase" ;
rdfs:comment "The cell cycle phase following cytokinesis which begins with G1 phase, proceeds through S phase and G2 phase and ends when prophase of meiosis or mitosis begins. During interphase the cell readies itself for meiosis or mitosis and the replication of its DNA occurs." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0003109 a rdfs:Class ;
rdfs:label "anterior pole cell" ;
rdfs:comment "cell which is part of the anterior pole" .
obo:PLANA_0003730 a rdfs:Class ;
rdfs:label "anterior region of lateral fragment" ;
rdfs:comment "The anterior region of a fragment derived from an amputation parallel to or along any edge, which overlaps the lateral region, dorso-lateral region, ventro-lateral region, antero-lateral margin, lateral margin, ventro-lateral margin, postero-lateral margin, dorso-lateral margin, antero-lateral region, postero-lateral region." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003255 a rdfs:Class ;
rdfs:label "meiotic prophase II spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic prophase II" ;
rdfs:subClassOf obo:PLANA_0000221 , obo:PLANA_0003254 .
obo:PLANA_0003102 a rdfs:Class ;
rdfs:label "visual system cell" ;
rdfs:comment "cell which is part of the visual system" .
obo:PLANA_0001005 a rdfs:Class ;
rdfs:label "basal lamina of epidermis" ;
rdfs:comment "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." ;
rdfs:subClassOf obo:UBERON_0000476 .
obo:PLANA_0000020 a rdfs:Class ;
rdfs:label "protonephridia" ;
rdfs:comment "Excretory organs consisting of flame cells, proximal tubules, and distal tubules connected to a mesenchymal collecting duct." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000431 .
obo:PATO_0001875 a rdfs:Class ;
rdfs:label "triangular" ;
rdfs:comment "A shape quality inhering in a bearer by virtue of the bearer's having three angles." ;
rdfs:subClassOf obo:PATO_0002006 .
obo:PLANA_0000413 a rdfs:Class ;
rdfs:label "pharynx outer epithelium surface" ;
rdfs:comment "Epithelial surface covering the outside of the pharynx." ;
rdfs:subClassOf obo:BSPO_0000005 .
obo:PLANA_0002047 a rdfs:Class ;
rdfs:label "pharynx inner epidermal cell" ;
rdfs:comment "Epithelial cells lining the inside of the pharynx. In Smed, distally located cells are heavily ciliated." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000106 , obo:PLANA_0002032 .
obo:PLANA_0000459 a rdfs:Class ;
rdfs:label "optic chiasm" ;
rdfs:comment "A decussation of the diencephalon where the fibers of the optic nerve cross" ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000543 .
obo:PLANA_0007551 a rdfs:Class ;
rdfs:label "klf+ sensory neuron progenitor cell" ;
rdfs:comment "piwi-1+, klf+ progenitor neoblasts required for production of cintillo+ sensory neurons." ;
rdfs:subClassOf obo:PLANA_0000012 , obo:PLANA_0000429 .
obo:PLANA_0000524 a rdfs:Class ;
rdfs:label "organelle membrane" ;
rdfs:comment "A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle." ;
rdfs:subClassOf obo:PLANA_0000520 .
obo:PLANA_0000420 a rdfs:Class ;
rdfs:label "parapharyngeal region" ;
rdfs:comment "Region of the animal lateral to and surrounding the pharynx." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000102 .
obo:PLANA_0003740 a rdfs:Class ;
rdfs:label "dorsal region of wedge fragment" ;
rdfs:comment "The dorsal region of a piece of tissue removed from the lateral margin at any given point that extendes interiorly to more medial structures." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000204 a rdfs:Class ;
rdfs:label "ovary" ;
rdfs:comment "A gonad containing female germline stem cells which fuel oocyte production. Two ovaries are located ventally, underneath the body wall musculature, immediately posterior to the cephalic ganglia (brain) and adjacent to the ventral nerve cords. The neoblast compartment, including piwi-1+, nanos+ primordial germ cells, fuel formation of the ovaries during juvenile development." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000217 .
obo:BSPO_0000035 a rdfs:Class ;
rdfs:label "postero-ventral region" ;
rdfs:comment "Anatomical region that overlaps the posterior and ventral regions of a body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000072 , obo:BSPO_0000084 .
obo:PLANA_0000564 a rdfs:Class ;
rdfs:label "peripheral nervous system neuron" ;
rdfs:comment "Any neuron that is part of a peripheral nervous system." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0002012 a rdfs:Class ;
rdfs:label "bulbar cavity" ;
rdfs:comment "An enlarged portion of the seminal vesicle, comprised of secretory epithelial cells, that connects to the ejaculatory duct within the penis papilla." ;
rdfs:subClassOf obo:BFO_0000004 , obo:UBERON_0002553 .
obo:PLANA_0002116 a rdfs:Class ;
rdfs:label "fission fragment" ;
rdfs:comment "A fragment derived from a spontaneous or induced fission event." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0000119 a rdfs:Class ;
rdfs:label "terminally differentiated cell" ;
rdfs:comment "A post-mitotic, terminally differentiated cell type found in planarian embryos, juveniles and/or adult animals." ;
rdfs:subClassOf obo:PLANA_0002095 .
obo:PLANA_0007507 a rdfs:Class ;
rdfs:label "obsolete posterior compartment" ;
rdfs:comment "replaced" .
obo:GO_0044848 a rdfs:Class ;
rdfs:label "biological phase" ;
rdfs:comment "A distinct period or stage in a biological process or cycle." ;
rdfs:subClassOf obo:GO_0008150 .
obo:PLANA_0002001 a rdfs:Class ;
rdfs:label "adherens junction" ;
rdfs:comment "A cell junction at which anchoring proteins (cadherins or integrins) extend through the plasma membrane and are attached to actin filaments." ;
rdfs:subClassOf obo:PLANA_0000506 .
obo:PLANA_0000136 a rdfs:Class ;
rdfs:label "whole organism" ;
rdfs:comment "Anatomical structure that is an individual member of Schmidtea mediterranea or any other flatworm of the class Turbellaria." ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0000013 a rdfs:Class ;
rdfs:label "visceral musculature" ;
rdfs:comment "Musculature surrounding internal organs of the body." ;
rdfs:subClassOf obo:PLANA_0000431 .
obo:GO_0000090 a rdfs:Class ;
rdfs:label "mitotic anaphase" ;
rdfs:comment "The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of a mitotic cell cycle." ;
rdfs:subClassOf obo:GO_0051322 .
obo:PLANA_0007536 a rdfs:Class ;
rdfs:label "obsolete specific_to" ;
rdfs:comment "using part of instead" .
obo:PLANA_0007521 a rdfs:Class ;
rdfs:label "left-right axis of the whole animal" ;
rdfs:comment "Axis perpendicular to both the anteroposterior and dorsoventral axis that runs from the left side of the animal, through the medial region (center) and out to the right side." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003247 a rdfs:Class ;
rdfs:label "zygotene stage spermatocyte" ;
rdfs:comment "spermatocyte undergoing zygotene" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:BSPO_0000198 a rdfs:Class ;
rdfs:label "oral-aboral axis" ;
rdfs:comment "An axis that extends from the oral opening to the furthest point in an organism that is directly opposite." ;
rdfs:subClassOf obo:BSPO_0000010 .
obo:PLANA_0003207 a rdfs:Class ;
rdfs:label "G1 phase spermatogonial stem cell" ;
rdfs:comment "spermatogonial stem cell undergoing mitotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0000219 .
obo:PLANA_0000212 a rdfs:Class ;
rdfs:label "obsolete blastomere compartment" ;
rdfs:comment "replace with blastomere only" .
obo:PLANA_0000095 a rdfs:Class ;
rdfs:label "trail cell" ;
rdfs:comment "Ovo+ neoblasts and post-mitotic eye progenitors that simultaneously migrate and differentiate into photoreceptor neurons and non-neuronal pigment cup cells comprising the optic cup." ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:CARO_0000006 a rdfs:Class ;
rdfs:label "material anatomical entity" ;
rdfs:comment "An anatomical entity that has mass." ;
rdfs:subClassOf obo:BFO_0000040 , obo:CARO_0000000 .
obo:PLANA_0003300 a rdfs:Class ;
rdfs:label "cephalic ganglia primordium" ;
rdfs:comment "This primordium develops into cephalic ganglia" ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000131 .
obo:PLANA_0003802 a rdfs:Class ;
rdfs:label "lateral muscle cell" ;
rdfs:comment "muscle cell is contained in the lateral region" ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000101 .
obo:BSPO_0000027 a rdfs:Class ;
rdfs:label "antero-ventral region" ;
rdfs:comment "Anatomical region that overlaps the anterior and ventral regions of a body or body part." ;
rdfs:subClassOf obo:BSPO_0000070 , obo:BSPO_0000071 , obo:BSPO_0000084 .
obo:PLANA_0002036 a rdfs:Class ;
rdfs:label "excretory cell" ;
rdfs:comment "A cell involved in the elimination of metabolic and foreign toxins, and in maintaining the ionic, acid-base and water balance of biological fluids." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0000114 a rdfs:Class ;
rdfs:label "anatomical system" ;
rdfs:comment "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." ;
rdfs:subClassOf obo:PLANA_0000427 .
obo:PLANA_0003214 a rdfs:Class ;
rdfs:label "G1 phase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic G1 phase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:GO_0000240 a rdfs:Class ;
rdfs:label "diplotene" ;
rdfs:comment "The cell cycle phase which follows pachytene during prophase I of meiosis, during which the homologous chromosomes begin to separate and the synaptonemal complex dissolves." ;
rdfs:subClassOf obo:GO_0098764 .
obo:PLANA_0000513 a rdfs:Class ;
rdfs:label "cytoplasmic part" ;
rdfs:comment "Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." ;
rdfs:subClassOf obo:PLANA_0000509 .
obo:BSPO_0000070 a rdfs:Class ;
rdfs:label "anatomical region" ;
rdfs:comment "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." ;
rdfs:subClassOf obo:CARO_0000003 .
obo:PLANA_0003500 a rdfs:Class ;
rdfs:label "cephalic ganglia progenitor cell" ;
rdfs:comment "A progenitor cell that gives rise to one or more of the cell type(s) in the nervous system." ;
rdfs:subClassOf obo:CARO_0000000 , obo:PLANA_0000120 .
obo:PLANA_0007554 a rdfs:Class ;
rdfs:label "obsolete parenchymal compartment" ;
rdfs:comment "no longer designating mediolateral regions using the contained_in object property" .
obo:GO_0098763 a rdfs:Class ;
rdfs:label "mitotic cell cycle phase" ;
rdfs:comment "One of the distinct periods or stages into which the mitotic cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events." ;
rdfs:subClassOf obo:GO_0022403 .
obo:PLANA_0007569 a rdfs:Class ;
rdfs:label "NME cell" ;
rdfs:comment "Guidepost cell associated with the visual circuit that are present near the eye, located along axons just anterior and ventral to the eye. Name acronym stands for notum+ muscle cell near eye." ;
rdfs:subClassOf obo:PLANA_0007568 .
obo:PLANA_0002023 a rdfs:Class ;
rdfs:label "ciliated epithelium" ;
rdfs:comment "Epithelium bearing vibratile cilia on the free surface." ;
rdfs:subClassOf obo:PLANA_0002118 .
obo:GO_0006996 a rdfs:Class ;
rdfs:label "organelle organization" ;
rdfs:comment "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ;
rdfs:subClassOf obo:GO_0016043 .
obo:PLANA_0000553 a rdfs:Class ;
rdfs:label "motor neuron" ;
rdfs:comment "An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes or inhibits movement." ;
rdfs:subClassOf obo:PLANA_0000548 .
obo:PLANA_0002060 a rdfs:Class ;
rdfs:label "nephridiopore" ;
rdfs:comment "The external opening and terminus of a protonephridium made by a terminal cell." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0002079 .
obo:BFO_0000031 a rdfs:Class ;
rdfs:label "generically dependent continuant"@en ;
rdfs:comment "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en ;
rdfs:subClassOf obo:BFO_0000002 .
obo:PLANA_0002081 a rdfs:Class ;
rdfs:label "postsynaptic cell" ;
rdfs:comment "A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000499 .
obo:PLANA_0003244 a rdfs:Class ;
rdfs:label "meiotic G2 phase spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic G2 phase" ;
rdfs:subClassOf obo:PLANA_0000221 .
obo:BSPO_0000068 a rdfs:Class ;
rdfs:label "ventral side" ;
rdfs:comment "An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:IAO_0000579 a rdfs:Class ;
rdfs:label "centrally registered identifier registry"@en ;
rdfs:comment "A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process."@en ;
rdfs:subClassOf obo:IAO_0020020 .
obo:PLANA_0000090 a rdfs:Class ;
rdfs:label "sperm" ;
rdfs:comment "A mature male germ cell that develops from a spermatid." ;
rdfs:subClassOf obo:PLANA_0000122 , obo:PLANA_0000228 .
obo:PLANA_0004511 a rdfs:Class ;
rdfs:label "oral-aboral axis of the embryo" ;
rdfs:comment "Axis that runs from the oral pole and to the aboral pole of the spherical embryo (Stage 3 through early Stage 6). The oral pole is centered around the embryonic pharynx; the aboral pole is located opposite the embryonic pharynx." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000549 a rdfs:Class ;
rdfs:label "excitatory motor neuron" ;
rdfs:comment "A motor neuron that is capable of directly inducing muscle contraction." ;
rdfs:subClassOf obo:PLANA_0000553 , obo:PLANA_0000564 .
obo:GO_0003006 a rdfs:Class ;
rdfs:label "developmental process involved in reproduction" ;
rdfs:comment "A developmental process in which a progressive change in the state of some part of an organism, germline or somatic, specifically contributes to its ability to form offspring." ;
rdfs:subClassOf obo:GO_0022414 , obo:GO_0032502 .
obo:PLANA_0000132 a rdfs:Class ;
rdfs:label "obsolete gametogenesis" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:PLANA_0000497 a rdfs:Class ;
rdfs:label "obsolete anatomical junction" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0003236 a rdfs:Class ;
rdfs:label "S phase germ cell cyst" ;
rdfs:comment "germ cell cyst undergoing mitotic S phase" ;
rdfs:subClassOf obo:PLANA_0002043 .
obo:PLANA_0000120 a rdfs:Class ;
rdfs:label "progenitor cell" ;
rdfs:comment "A cycling neoblast and/or post-mitotic cell that is primed or irreversibly committed to a tissue-specific differentation program" ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000499 .
obo:PLANA_0007540 a rdfs:Class ;
rdfs:label "viscid gland cell" ;
rdfs:comment "A specialized insunk epithelial cell that is part of the adhesion glands which is responsible for production and excretion of the viscid substance allowing adherence to a substrate." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000487 .
obo:PLANA_0000532 a rdfs:Class ;
rdfs:label "nuclear part" ;
rdfs:comment "Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated." ;
rdfs:subClassOf obo:PLANA_0000509 .
obo:PLANA_0003225 a rdfs:Class ;
rdfs:label "metaphase spermatogonia" ;
rdfs:comment "spermatogonium undergoing mitotic metaphase" ;
rdfs:subClassOf obo:PLANA_0000220 .
obo:GO_0022402 a rdfs:Class ;
rdfs:label "cell cycle process" ;
rdfs:comment "The cellular process that ensures successive accurate and complete genome replication and chromosome segregation." ;
rdfs:subClassOf obo:GO_0009987 .
a rdfs:Class ;
rdfs:comment "An unconstrained type or object" .
obo:PLANA_0002092 a rdfs:Class ;
rdfs:label "rhabdomere" ;
rdfs:comment "The dendritic process of a bipolar photoreceptor neuron that projects into the optic cup lumen and senses light." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000501 .
obo:PLANA_0000069 a rdfs:Class ;
rdfs:label "inner longitudinal muscle cell" ;
rdfs:comment "Inner most body wall muscle fibers arrayed along the anteroposterior axis. These fibers are thicker than the outer longitudinal muscle fibers. The pattern of these muscles differs along the dorsoventral axis, with the dorsal arrangement converging at the central zone of the anterior pole. The ventral arrangement is more parallel or may diverge slightly as it approaches the ventral pole." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000071 .
obo:PLANA_0000228 a rdfs:Class ;
rdfs:label "male germ cell" ;
rdfs:comment "A male germ cell is a germ cell that supports male gamete production." ;
rdfs:subClassOf obo:PLANA_0000227 .
obo:PLANA_0003001 a rdfs:Class ;
rdfs:label "lateral region of the whole animal" ;
rdfs:comment "The lateral region of the medio-lateral axis of the whole animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:BSPO_0000063 a rdfs:Class ;
rdfs:label "dorsal side" ;
rdfs:comment "An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane." ;
rdfs:subClassOf obo:BSPO_0000054 .
obo:BSPO_0000098 a rdf:Property ;
rdfs:label "dorsal to" ;
rdfs:comment "x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." ;
rdfs:seeAlso obo:FBql_00005865 , obo:FBcv_0000041 ;
rdfs:range .
obo:GO_0005575 a rdfs:Class ;
rdfs:label "cellular_component" ;
rdfs:comment "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." .
obo:PLANA_0007539 a rdfs:Class ;
rdfs:label "anchor cell" ;
rdfs:comment "Specialized epithelial cell located along the dorsoventral margin that surrounds the viscid and releasing gland cells." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000487 .
obo:PLANA_0000424 a rdfs:Class ;
rdfs:label "obsolete material anatomical entity" ;
rdfs:comment "replacing with UBERON term" .
obo:PLANA_0007543 a rdfs:Class ;
rdfs:label "TrpA+ central nervous system neuron" ;
rdfs:comment "A subset of TrpA+ neurons, located medially in the cephalic ganglia, whose formation is dependent on function of runt-1 and ap2." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000562 .
obo:PLANA_0000024 a rdfs:Class ;
rdfs:label "Smed asexual biotype" ;
rdfs:comment "Asexual animal strains that reproduce solely through fission followed by whole body regeneration. Asexual Smed are stable diploids that harbor a chromosome translocation, making them karyotypically distinct from sexual Smed." ;
rdfs:subClassOf obo:PLANA_0000021 .
obo:PLANA_0000100 a rdfs:Class ;
rdfs:label "epithelial cell" ;
rdfs:comment "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where the apical part is directed towards the lumen and the basal part to the basal lamina." ;
rdfs:subClassOf obo:PLANA_0000119 .
obo:PLANA_0000017 a rdfs:Class ;
rdfs:label "photoreceptor neuron" ;
rdfs:comment "Bipolar photoreceptor neurons with dendritic projections into the optic cup and axons that innervate the underlying brain." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000099 .
obo:PLANA_0000143 a rdfs:Class ;
rdfs:label "ventral region of the whole animal" ;
rdfs:comment "Compartment along the dorsoventral axis that is below the anteroposterior axis." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0003734 a rdfs:Class ;
rdfs:label "anterior region of longitudinal fragment" ;
rdfs:comment "The anterior region of a fragment derived from an amputation parallel to the midline." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:UBERON_0000475 a rdfs:Class ;
rdfs:label "organism subdivision" ;
rdfs:comment "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." ;
rdfs:subClassOf obo:UBERON_0000061 .
obo:PLANA_0000543 a rdfs:Class ;
rdfs:label "neuron projection bundle" ;
rdfs:comment "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." ;
rdfs:subClassOf obo:PLANA_0000538 .
obo:PLANA_0003709 a rdfs:Class ;
rdfs:label "ventral region of tail fragment" ;
rdfs:comment "The ventral region of a fragment derived from a postpharyngeal amputation encompassing the tail." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:IAO_0020000 a rdfs:Class ;
rdfs:label "identifier"@en ;
rdfs:comment "An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity."@en ;
rdfs:subClassOf obo:IAO_0000030 .
obo:PLANA_0002120 a rdfs:Class ;
rdfs:label "extraembryonic organ" ;
rdfs:comment "Organ that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." ;
rdfs:subClassOf obo:PLANA_0000431 .
obo:PLANA_0003258 a rdfs:Class ;
rdfs:label "meiotic telophase II spermatocyte" ;
rdfs:comment "spermatocyte undergoing meiotic telophase II" ;
rdfs:subClassOf obo:PLANA_0000221 , obo:PLANA_0003254 .
obo:GO_0051328 a rdfs:Class ;
rdfs:label "meiotic interphase" ;
rdfs:comment "The cell cycle phase which begins after cytokinesis and ends when meiotic prophase begins. Meiotic cells have an interphase after each meiotic division, but only interphase I involves replication of the cell's DNA." ;
rdfs:subClassOf obo:GO_0051325 , obo:GO_0098762 .
obo:PLANA_0000538 a rdfs:Class ;
rdfs:label "axon tract" ;
rdfs:comment "A group of axons linking two or more neuropils and having a common origin, termination" ;
rdfs:subClassOf obo:PLANA_0000113 .
obo:PLANA_0007518 a rdfs:Class ;
rdfs:label "lysosome" ;
rdfs:comment "The digestive component of the cell. They are homogenous, dense, membrane bound organelles filled with acid hydrolases which break down polymers." ;
rdfs:subClassOf obo:PLANA_0000527 .
obo:PLANA_0004530 a rdfs:Class ;
rdfs:label "oviduct lumen" ;
rdfs:comment "Anatomical space enclosed by the oviduct epithelium." ;
rdfs:subClassOf obo:BFO_0000141 , obo:PLANA_0002053 .
obo:PLANA_0000217 a rdfs:Class ;
rdfs:label "gonad" ;
rdfs:comment "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." ;
rdfs:subClassOf obo:PLANA_0002089 .
obo:PLANA_0002026 a rdfs:Class ;
rdfs:label "cut" ;
rdfs:comment "A wound or cleft resulted from tissue separation into parts or laid open or penetrated with a sharp edge or instrument." ;
rdfs:subClassOf obo:PLANA_0002099 .
obo:PLANA_0002015 a rdfs:Class ;
rdfs:label "cephalic ganglia lobe" ;
rdfs:comment "One of two bilaterally symmetric structures comprising the planarian brain." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000113 .
obo:PLANA_0000431 a rdfs:Class ;
rdfs:label "organ" ;
rdfs:comment "Anatomical structure that performs a specific function or group of functions." ;
rdfs:subClassOf obo:PLANA_0000427 .
obo:PLANA_0003723 a rdfs:Class ;
rdfs:label "posterior region of anterior fragment" ;
rdfs:comment "The posterior region of a fragment encompassing all or part of the anterior region of the animal." ;
rdfs:subClassOf obo:BFO_0000040 .
obo:PLANA_0000560 a rdfs:Class ;
rdfs:label "multipolar neuron" ;
rdfs:comment "Neuron with an axon and two or more dendrites." ;
rdfs:subClassOf obo:PLANA_0000099 .
obo:PLANA_0000223 a rdfs:Class ;
rdfs:label "oogonial stem cell" ;
rdfs:comment "A piwi-1+, nanos+ cell residing in the ovary that self-renews and give rise to oogonial cells that differentiate into oocytes." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0000121 , obo:PLANA_0000229 .
obo:PLANA_0003604 a rdfs:Class ;
rdfs:label "postpharyngeal fragment" ;
rdfs:comment "A fragment derived from two postpharyngeal amputations, removing the anterior region and the tail tip." ;
rdfs:subClassOf obo:PLANA_0002128 .
obo:PLANA_0003304 a rdfs:Class ;
rdfs:label "testis primordium" ;
rdfs:comment "This primordium develops into testis" ;
rdfs:subClassOf obo:PLANA_0000131 , obo:PLANA_0003305 .
obo:PLANA_0004532 a rdfs:Class ;
rdfs:label "oviduct epithelium" ;
rdfs:comment "Ciliated epithelium lining the oviduct." ;
rdfs:subClassOf obo:BFO_0000040 , obo:PLANA_0002023 .
obo:PLANA_0004504 a rdfs:Class ;
rdfs:label "asexual adult" ;
rdfs:comment "Asexually reproducing Schmidtea mediterranea exist as constitutive adults, undergoing successive cycles of fission and whole animal regeneration. Asexual Schmidtea mediterranea contain primordial germ cells, but do not possess a reproductive system." ;
rdfs:subClassOf obo:UBERON_0000105 .
obo:CARO_0000010 a rdfs:Class ;
rdfs:label "anatomical boundary" ;
rdfs:comment "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." ;
rdfs:subClassOf obo:CARO_0000007 .
obo:PLANA_0000039 a rdfs:Class ;
rdfs:label "gamma neoblast" ;
rdfs:comment "An abundant neoblast subclass, exhibiting enriched expression of gata456a, hnf4, prox-1 and nkx2.2, implicated in maintenance and regeneration of the definitive gut." ;
rdfs:subClassOf obo:PLANA_0000429 .
obo:PLANA_0003218 a rdfs:Class ;
rdfs:label "metaphase oogonial stem cell" ;
rdfs:comment "oogonial stem cell undergoing mitotic metaphase" ;
rdfs:subClassOf obo:PLANA_0000223 .
obo:PLANA_0000479 a rdfs:Class ;
rdfs:label "pharynx inner nerve plexus" ;
rdfs:comment "Ring of the pharynx nerve plexus that is proximal to the lumen." ;
rdfs:subClassOf obo:PLANA_0000465 .
obo:PLANA_0000058 a rdfs:Class ;
rdfs:label "embryonic digestive system" ;
rdfs:comment "A cryptic digestive system in Stage 3-6 embryos comprised of temporary embryonic cell types and organs, including the embryonic pharynx and primitive gut cells. Embryonic gut cells, likely produced from blastomeres, form a phagocytic tissue layer surrounding the inner gut cavity during Stages 4-6. It is not known whether the embryonic gut is temporary embryonic tissue or a definitive tissue. For convenience, the embryonic gut is currently designated as an extraembryonic structure because cell type specific markers for the embryonic gut do not stain the definitive gut in hatchlings or adult animals." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000063 .
obo:PLANA_0007565 a rdfs:Class ;
rdfs:label "asexual organism" ;
rdfs:comment "An individual member of the asexual biotype of Schmidtea mediterranea." ;
rdfs:subClassOf obo:BFO_0000004 , obo:PLANA_0000136 .
obo:IAO_0000027 a rdfs:Class ;
rdfs:label "data item"@en ;
rdfs:comment "An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en ;
rdfs:subClassOf obo:IAO_0000030 .
obo:GO_0007136 a rdfs:Class ;
rdfs:label "meiotic prophase II" ;
rdfs:comment "The cell cycle phase which is the first stage of meiosis II and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell." ;
rdfs:subClassOf obo:GO_0051324 , obo:GO_0098765 .
obo:PLANA_0000091 a rdfs:Class ;
rdfs:label "obsolete sphere formation" ;
rdfs:comment "removing all processes. may bring back if PLANA expanded to cover processes." .
obo:BSPO_0000102 a rdf:Property ;
rdfs:label "ventral to" ;
rdfs:comment "x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." ;
rdfs:seeAlso obo:FBql_00005866 , obo:FBcv_0000049 ;
rdfs:range .
obo:BSPO_0000107 a rdf:Property ;
rdfs:label "deep to" ;
rdfs:comment "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." ;
rdfs:range .
obo:BSPO_0000108 a rdf:Property ;
rdfs:label "superficial to" ;
rdfs:comment "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer." ;
rdfs:range .
obo:BSPO_0000120 a rdf:Property ;
rdfs:label "in left side of" ;
rdfs:comment "X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:BSPO_0000126 .
obo:BSPO_0000121 a rdf:Property ;
rdfs:label "in right side of" ;
rdfs:comment "X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:BSPO_0000126 .
obo:BSPO_0000126 a rdf:Property ;
rdfs:label "in lateral side of" ;
rdfs:comment "X in lateral side of Y <=> if X is in left side of Y or X is in right side of Y. X is often, but not always a paired structure" ;
rdfs:seeAlso , ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:BFO_0000050 .
obo:IAO_0000115 a rdf:Property ;
rdfs:label "definition" ;
rdfs:comment "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en ;
rdfs:range xsd:string .
obo:IAO_0000116 a rdf:Property ;
rdfs:label "editor note"@en ;
rdfs:comment "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en ;
rdfs:range xsd:string .
obo:IAO_0000232 a rdf:Property ;
rdfs:label "curator note"@en ;
rdfs:comment "An administrative note of use for a curator but of no use for a user"@en ;
rdfs:range xsd:string .
obo:IAO_0000412 a rdf:Property ;
rdfs:label "imported from"@en ;
rdfs:comment "For external terms/classes, the ontology from which the term was imported"@en ;
rdfs:range xsd:string .
obo:IAO_0100001 a rdf:Property ;
rdfs:label "term replaced by" ;
rdfs:comment "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en ;
rdfs:range xsd:string .
obo:RO_0000052 a rdf:Property ;
rdfs:label "characteristic of"@en ;
rdfs:comment "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002314 .
obo:RO_0000053 a rdf:Property ;
rdfs:label "has characteristic"@en ;
rdfs:comment "Inverse of characteristic_of"@en ;
rdfs:range obo:BFO_0000020 .
obo:RO_0000080 a rdf:Property ;
rdfs:label "quality of"@en ;
rdfs:comment "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0000052 .
obo:RO_0000081 a rdf:Property ;
rdfs:label "role of"@en ;
rdfs:comment "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0000052 .
obo:RO_0000086 a rdf:Property ;
rdfs:label "has quality"@en ;
rdfs:comment "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en ;
rdfs:range obo:BFO_0000019 ;
rdfs:subPropertyOf obo:RO_0000053 .
obo:RO_0000092 a rdf:Property ;
rdfs:label "disposition of"@en ;
rdfs:comment "inverse of has disposition" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0000052 .
obo:RO_0001001 a rdf:Property ;
rdfs:label "derives into"@en ;
rdfs:comment "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ;
rdfs:range .
obo:RO_0001019 a rdf:Property ;
rdfs:label "contains"@en ;
rdfs:range .
obo:RO_0002013 a rdf:Property ;
rdfs:label "has regulatory component activity" ;
rdfs:comment "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002334 , obo:RO_0002017 .
obo:RO_0002014 a rdf:Property ;
rdfs:label "has negative regulatory component activity" ;
rdfs:comment "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002335 , obo:RO_0002013 .
obo:RO_0002015 a rdf:Property ;
rdfs:label "has positive regulatory component activity" ;
rdfs:comment "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002336 , obo:RO_0002013 .
obo:RO_0002017 a rdf:Property ;
rdfs:label "has component activity" ;
rdfs:comment "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002018 .
obo:RO_0002022 a rdf:Property ;
rdfs:label "directly regulated by" ;
rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002334 .
obo:RO_0002023 a rdf:Property ;
rdfs:label "directly negatively regulated by" ;
rdfs:comment "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002022 .
obo:RO_0002024 a rdf:Property ;
rdfs:label "directly positively regulated by" ;
rdfs:comment "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002022 .
obo:RO_0002025 a rdf:Property ;
rdfs:label "has effector activity" ;
rdfs:comment "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002017 .
obo:RO_0002086 a rdf:Property ;
rdfs:label "ends after"@en ;
rdfs:comment "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002222 .
obo:RO_0002087 a rdf:Property ;
rdfs:label "immediately preceded by"@en ;
rdfs:comment "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:BFO_0000062 .
obo:RO_0002090 a rdf:Property ;
rdfs:label "immediately precedes"@en ;
rdfs:comment "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:BFO_0000063 .
obo:RO_0002093 a rdf:Property ;
rdfs:label "ends during" ;
rdfs:range .
obo:RO_0002163 a rdf:Property ;
rdfs:label "spatially disjoint from" ;
rdfs:comment "A is spatially_disjoint_from B if and only if they have no parts in common" ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002323 .
obo:RO_0002180 a rdf:Property ;
rdfs:label "has component"@en ;
rdfs:comment "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:BFO_0000051 .
obo:RO_0002212 a rdf:Property ;
rdfs:label "negatively regulates"@en ;
rdfs:comment "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002305 , obo:RO_0002211 .
obo:RO_0002213 a rdf:Property ;
rdfs:label "positively regulates"@en ;
rdfs:comment "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002304 , obo:RO_0002211 .
obo:RO_0002216 a rdf:Property ;
rdfs:label "capable of part of"@en ;
rdfs:comment "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002500 , obo:RO_0002328 .
obo:RO_0002255 a rdf:Property ;
rdfs:label "developmentally contributes to"@en ;
rdfs:comment "inverse of has developmental contribution from" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002385 , obo:RO_0002286 .
obo:RO_0002259 a rdf:Property ;
rdfs:range xsd:string .
obo:RO_0002263 a rdf:Property ;
rdfs:label "acts upstream of" ;
rdfs:comment "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002264 .
obo:RO_0002264 a rdf:Property ;
rdfs:label "acts upstream of or within" ;
rdfs:comment "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002500 .
obo:RO_0002286 a rdf:Property ;
rdfs:label "developmentally succeeded by"@en ;
rdfs:comment "Inverse of developmentally preceded by" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002384 .
obo:RO_0002304 a rdf:Property ;
rdfs:label "causally upstream of, positive effect" ;
rdfs:comment "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0004047 , obo:RO_0002411 .
obo:RO_0002305 a rdf:Property ;
rdfs:label "causally upstream of, negative effect" ;
rdfs:comment "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0004046 , obo:RO_0002411 .
obo:RO_0002314 a rdf:Property ;
rdfs:label "characteristic of part of"@en ;
rdfs:comment "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002502 .
obo:RO_0002323 a rdf:Property ;
rdfs:label "mereotopologically related to"@en ;
rdfs:comment "A mereological relationship or a topological relationship" ;
rdfs:range .
obo:RO_0002324 a rdf:Property ;
rdfs:label "developmentally related to"@en ;
rdfs:comment "A relationship that holds between entities participating in some developmental process (GO:0032502)" ;
rdfs:range .
obo:RO_0002327 a rdf:Property ;
rdfs:label "enables"@en ;
rdfs:comment "c enables p iff c is capable of p and c acts to execute p." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002215 .
obo:RO_0002328 a rdf:Property ;
rdfs:label "functionally related to"@en ;
rdfs:comment "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." ;
rdfs:range .
obo:RO_0002329 a rdf:Property ;
rdfs:label "part of structure that is capable of"@en ;
rdfs:comment "this relation holds between c and p when c is part of some c', and c' is capable of p." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002328 .
obo:RO_0002331 a rdf:Property ;
rdfs:label "involved in"@en ;
rdfs:comment "c involved_in p if and only if c enables some process p', and p' is part of p" ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002431 , obo:RO_0000056 .
obo:RO_0002333 a rdf:Property ;
rdfs:label "enabled by"@en ;
rdfs:comment "inverse of enables" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0000057 .
obo:RO_0002335 a rdf:Property ;
rdfs:label "negatively regulated by"@en ;
rdfs:comment "inverse of negatively regulates" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002334 .
obo:RO_0002336 a rdf:Property ;
rdfs:label "positively regulated by"@en ;
rdfs:comment "inverse of positively regulates" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002334 .
obo:RO_0002352 a rdf:Property ;
rdfs:label "input of"@en ;
rdfs:comment "inverse of has input" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0000056 .
obo:RO_0002385 a rdf:Property ;
rdfs:label "has potential to developmentally contribute to"@en ;
rdfs:comment "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002384 .
obo:RO_0002387 a rdf:Property ;
rdfs:label "has potential to develop into"@en ;
rdfs:comment "x has the potential to develop into y iff x develops into y or if x is capable of developing into y"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002384 .
obo:RO_0002388 a rdf:Property ;
rdfs:label "has potential to directly develop into"@en ;
rdfs:comment "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002387 .
obo:RO_0002404 a rdf:Property ;
rdfs:label "causally downstream of"@en ;
rdfs:comment "inverse of upstream of" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002427 , obo:BFO_0000062 .
obo:RO_0002405 a rdf:Property ;
rdfs:label "immediately causally downstream of"@en ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002404 , obo:RO_0002087 .
obo:RO_0002407 a rdf:Property ;
rdfs:label "indirectly positively regulates"@en ;
rdfs:comment "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0012012 , obo:RO_0002213 .
obo:RO_0002409 a rdf:Property ;
rdfs:label "indirectly negatively regulates"@en ;
rdfs:comment "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0012012 , obo:RO_0002212 .
obo:RO_0002410 a rdf:Property ;
rdfs:label "causally related to"@en ;
rdfs:comment "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." ;
rdfs:range .
obo:RO_0002411 a rdf:Property ;
rdfs:label "causally upstream of"@en ;
rdfs:comment "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002418 , obo:BFO_0000063 .
obo:RO_0002412 a rdf:Property ;
rdfs:label "immediately causally upstream of"@en ;
rdfs:comment "p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002411 , obo:RO_0002090 .
obo:RO_0002418 a rdf:Property ;
rdfs:label "causally upstream of or within" ;
rdfs:comment "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002501 .
obo:RO_0002427 a rdf:Property ;
rdfs:label "causally downstream of or within" ;
rdfs:comment "inverse of causally upstream of or within" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002501 .
obo:RO_0002428 a rdf:Property ;
rdfs:label "involved in regulation of" ;
rdfs:comment "c involved in regulation of p if c is involved in some p' and p' regulates some p" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002431 , obo:RO_0002263 .
obo:RO_0002429 a rdf:Property ;
rdfs:label "involved in positive regulation of" ;
rdfs:comment "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002428 .
obo:RO_0002430 a rdf:Property ;
rdfs:label "involved in negative regulation of" ;
rdfs:comment "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002428 .
obo:RO_0002431 a rdf:Property ;
rdfs:label "involved in or involved in regulation of" ;
rdfs:comment "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0002500 , obo:RO_0002264 .
obo:RO_0002432 a rdf:Property ;
rdfs:label "is active in" ;
rdfs:comment "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0002131 .
obo:RO_0002436 a rdf:Property ;
rdfs:label "molecularly interacts with" ;
rdfs:comment "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." ;
rdfs:seeAlso obo:ECO_0000353 ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002434 .
obo:RO_0002447 a rdf:Property ;
rdfs:label "phosphorylates" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002436 .
obo:RO_0002464 a rdf:Property ;
rdfs:label "helper property (not for use in curation)" ;
rdfs:range .
obo:RO_0002481 a rdf:Property ;
rdfs:label "is kinase activity" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002564 .
obo:RO_0002500 a rdf:Property ;
rdfs:label "causal agent in process" ;
rdfs:comment "A relationship between a material entity and a process where the material entity has some causal role that influences the process" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002595 .
obo:RO_0002502 a rdf:Property ;
rdfs:label "depends on" ;
rdfs:seeAlso obo:BFO_0000169 ;
rdfs:range .
obo:RO_0002559 a rdf:Property ;
rdfs:label "causally influenced by" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002506 .
obo:RO_0002563 a rdf:Property ;
rdfs:label "interaction relation helper property" ;
rdfs:seeAlso , ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002464 .
obo:RO_0002564 a rdf:Property ;
rdfs:label "molecular interaction relation helper property" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002563 .
obo:RO_0002571 a rdf:Property ;
rdfs:label "lumen of" ;
rdfs:comment "x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull." ;
rdfs:range obo:BFO_0000040 ;
rdfs:subPropertyOf obo:BFO_0000050 .
obo:RO_0002578 a rdf:Property ;
rdfs:label "directly regulates" ;
rdfs:comment "p directly regulates q iff p is immediately causally upstream of q and p regulates q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002412 , obo:RO_0002211 .
obo:RO_0002579 a rdf:Property ;
rdfs:label "is indirect form of" ;
rdfs:comment "relation p is the indirect form of relation q iff p is a subPropertyOf q, and there exists some p' such that p' is the direct form of q, p' o p' -> p, and forall x,y : x q y -> either (1) x p y or (2) x p' y" ;
rdfs:seeAlso ;
rdfs:range xsd:string .
obo:RO_0002581 a rdf:Property ;
rdfs:label "is a defining property chain axiom" ;
rdfs:comment "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL" ;
rdfs:range xsd:string .
obo:RO_0002582 a rdf:Property ;
rdfs:label "is a defining property chain axiom where second argument is reflexive" ;
rdfs:comment "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R." ;
rdfs:range xsd:string .
obo:RO_0002584 a rdf:Property ;
rdfs:label "has part structure that is capable of" ;
rdfs:comment "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002595 , obo:RO_0002328 .
obo:RO_0002596 a rdf:Property ;
rdfs:label "capable of regulating" ;
rdfs:comment "Holds between c and p if and only if c is capable of some activity a, and a regulates p." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002500 .
obo:RO_0002597 a rdf:Property ;
rdfs:label "capable of negatively regulating" ;
rdfs:comment "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002596 .
obo:RO_0002598 a rdf:Property ;
rdfs:label "capable of positively regulating" ;
rdfs:comment "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002596 .
obo:RO_0002608 a rdf:Property ;
rdfs:label "process has causal agent" ;
rdfs:comment "Inverse of 'causal agent in process'" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002410 .
obo:RO_0002629 a rdf:Property ;
rdfs:label "directly positively regulates" ;
rdfs:comment "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002578 , obo:RO_0002213 .
obo:RO_0002630 a rdf:Property ;
rdfs:label "directly negatively regulates" ;
rdfs:comment "p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002578 , obo:RO_0002212 .
obo:RO_0004031 a rdf:Property ;
rdfs:label "enables subfunction" ;
rdfs:comment "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002328 .
obo:RO_0004032 a rdf:Property ;
rdfs:label "acts upstream of or within, positive effect" ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002264 .
obo:RO_0004033 a rdf:Property ;
rdfs:label "acts upstream of or within, negative effect" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002264 .
obo:RO_0004034 a rdf:Property ;
rdfs:label "acts upstream of, positive effect" ;
rdfs:comment "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0004032 , obo:RO_0002263 .
obo:RO_0004035 a rdf:Property ;
rdfs:label "acts upstream of, negative effect" ;
rdfs:comment "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" ;
rdfs:seeAlso ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0004033 , obo:RO_0002263 .
obo:RO_0004046 a rdf:Property ;
rdfs:label "causally upstream of or within, negative effect" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002418 .
obo:RO_0004047 a rdf:Property ;
rdfs:label "causally upstream of or within, positive effect" ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002418 .
obo:RO_0012011 a rdf:Property ;
rdfs:label "indirectly causally upstream of"@en ;
rdfs:comment "p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0002411 .
obo:RO_0012012 a rdf:Property ;
rdfs:label "indirectly regulates"@en ;
rdfs:comment "p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0012011 , obo:RO_0002211 .
obo:RO_0017001 a rdf:Property ;
rdfs:label "device utilizes material"@en ;
rdfs:comment "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." ;
rdfs:range .
obo:RO_0019001 a rdf:Property ;
rdfs:label "positively regulates characteristic" ;
rdfs:comment "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0019000 .
obo:RO_0019002 a rdf:Property ;
rdfs:label "negatively regulates characteristic" ;
rdfs:comment "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C." ;
rdfs:range xsd:string ;
rdfs:subPropertyOf obo:RO_0019000 .
obo:UBPROP_0000001 a rdf:Property ;
rdfs:label "external_definition" ;
rdfs:comment "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." ;
rdfs:range xsd:string .
obo:UBPROP_0000003 a rdf:Property ;
rdfs:label "homology_notes" ;
rdfs:comment "Notes on the homology status of this class." ;
rdfs:range xsd:string .
obo:UBPROP_0000007 a rdf:Property ;
rdfs:label "has_relational_adjective" ;
rdfs:range xsd:string .
obo:UBPROP_0000008 a rdf:Property ;
rdfs:label "taxon_notes" ;
rdfs:comment "Notes on the how instances of this class vary across species." ;
rdfs:range xsd:string .
obo:UBPROP_0000012 a rdf:Property ;
rdfs:label "external_ontology_notes" ;
rdfs:comment "Notes on how similar or equivalent classes are represented in other ontologies." ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:label "synonym typically used in the context of human anatomy" ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:label "synonym typically used in the context of vertebrate anatomy" ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:range xsd:string .
obo:valid_for_go_annotation_extension a rdf:Property ;
rdfs:range xsd:string .
obo:valid_for_go_gp2term a rdf:Property ;
rdfs:range xsd:string .
obo:valid_for_go_ontology a rdf:Property ;
rdfs:range xsd:string .
obo:valid_for_gocam a rdf:Property ;
rdfs:range xsd:string .
obo:IAO_0000078 a rdfs:Class ;
rdfs:label "curation status specification"@en ;
rdfs:comment "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ;
rdfs:subClassOf obo:IAO_0000102 .
obo:IAO_0000002 a obo:IAO_0000078 ;
rdfs:label "example to be eventually removed"@en .
obo:IAO_0000120 a obo:IAO_0000078 ;
rdfs:label "metadata complete"@en ;
rdfs:comment "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en .
obo:IAO_0000121 a obo:IAO_0000078 ;
rdfs:label "organizational term"@en ;
rdfs:comment "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en .
obo:IAO_0000122 a obo:IAO_0000078 ;
rdfs:label "ready for release"@en ;
rdfs:comment "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en .
obo:IAO_0000123 a obo:IAO_0000078 ;
rdfs:label "metadata incomplete"@en ;
rdfs:comment "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en .
obo:IAO_0000124 a obo:IAO_0000078 ;
rdfs:label "uncurated"@en ;
rdfs:comment "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en .
obo:IAO_0000125 a obo:IAO_0000078 ;
rdfs:label "pending final vetting"@en ;
rdfs:comment "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en .
obo:IAO_0000423 a obo:IAO_0000078 ;
rdfs:label "to be replaced with external ontology term"@en ;
rdfs:comment "Terms with this status should eventually replaced with a term from another ontology."@en .
obo:IAO_0000428 a obo:IAO_0000078 ;
rdfs:label "requires discussion"@en ;
rdfs:comment "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en .
obo:IAO_0000225 a rdfs:Class ;
rdfs:label "obsolescence reason specification"@en ;
rdfs:comment "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ;
rdfs:subClassOf obo:IAO_0000102 .
obo:IAO_0000103 a obo:IAO_0000225 ;
rdfs:label "failed exploratory term"@en ;
rdfs:comment "The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job"@en .
obo:IAO_0000226 a obo:IAO_0000225 ;
rdfs:label "placeholder removed"@en .
obo:IAO_0000227 a obo:IAO_0000225 ;
rdfs:label "terms merged"@en .
obo:IAO_0000228 a obo:IAO_0000225 ;
rdfs:label "term imported"@en .
obo:IAO_0000229 a obo:IAO_0000225 ;
rdfs:label "term split"@en .
obo:OMO_0001000 a obo:IAO_0000225 ;
rdfs:label "out of scope" ;
rdfs:comment "The term was added to the ontology on the assumption it was in scope, but it turned out later that it was not."@en .
obo:IAO_0000409 a rdfs:Class ;
rdfs:label "denotator type"@en ;
rdfs:comment "A denotator type indicates how a term should be interpreted from an ontological perspective."@en ;
rdfs:subClassOf obo:IAO_0000102 .
obo:IAO_0000410 a obo:IAO_0000409 ;
rdfs:label "universal"@en .
obo:IAO_0000420 a obo:IAO_0000409 ;
rdfs:label "defined class"@en ;
rdfs:comment "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal"@en .
obo:IAO_0000421 a obo:IAO_0000409 ;
rdfs:label "named class expression"@en ;
rdfs:comment "A named class expression is a logical expression that is given a name. The name can be used in place of the expression."@en .