PREFIX obo: PREFIX rdf: PREFIX rdfs: PREFIX xsd: obo:PCO_0000075 a rdfs:Class ; rdfs:label "beta diversity"@en ; rdfs:comment "A community species diversity that is the ratio between regional and local species diversity." ; rdfs:subClassOf obo:PCO_0000019 . obo:RO_0000059 a rdf:Property ; rdfs:label "concretizes"@en ; rdfs:comment "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."@en ; rdfs:domain obo:BFO_0000020 ; rdfs:range obo:BFO_0000031 . a rdf:Property ; rdfs:label "different_in_magnitude_relative_to" ; rdfs:comment "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; rdfs:domain obo:PATO_0000001 ; rdfs:range obo:PATO_0000001 . obo:RO_0000056 a rdf:Property ; rdfs:label "participates in"@en ; rdfs:comment "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000003 . a rdf:Property ; rdfs:label "decreased_in_magnitude_relative_to" ; rdfs:comment "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; rdfs:domain obo:PATO_0000001 ; rdfs:range obo:PATO_0000001 ; rdfs:subPropertyOf . obo:RO_0002506 a rdf:Property ; rdfs:label "causal relation between entities" ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; rdfs:subPropertyOf obo:RO_0002410 . obo:RO_0002566 a rdf:Property ; rdfs:label "causally influences" ; rdfs:comment "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size)." ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; rdfs:subPropertyOf obo:RO_0002506 . obo:RO_0000052 a rdf:Property ; rdfs:label "inheres in"@en ; rdfs:comment "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence"@en ; rdfs:range . a rdf:Property ; rdfs:label "increased_in_magnitude_relative_to" ; rdfs:comment "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; rdfs:domain obo:PATO_0000001 ; rdfs:range obo:PATO_0000001 ; rdfs:subPropertyOf . obo:NCBITaxon_376913 a rdfs:Class ; rdfs:label "Haplorrhini" ; rdfs:subClassOf obo:NCBITaxon_9443 . obo:PCO_0000019 a rdfs:Class ; rdfs:label "community species diversity"@en ; rdfs:comment "The number of different species that are represented in a given community, weighted by their abundance. Community species diversity can be calculated in different ways, but consists of two components: species richness and species evenness."@en ; rdfs:subClassOf obo:PCO_0000004 . obo:BFO_0000034 a rdfs:Class ; rdfs:label "function"@en ; rdfs:subClassOf obo:BFO_0000016 . obo:RO_0000079 a rdf:Property ; rdfs:label "function of"@en ; rdfs:comment "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en ; rdfs:domain obo:BFO_0000034 ; rdfs:range ; rdfs:subPropertyOf obo:RO_0000052 . obo:BFO_0000054 a rdf:Property ; rdfs:label "realized in"@en ; rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; rdfs:domain obo:BFO_0000017 ; rdfs:range obo:BFO_0000015 . obo:NCBITaxon_6072 a rdfs:Class ; rdfs:label "Eumetazoa" ; rdfs:subClassOf obo:NCBITaxon_33208 . obo:PCO_0000059 a rdfs:Class ; rdfs:label "taxon as collection of organisms"@en ; rdfs:comment "A collection of organisms that has as members every organism of a taxon and no organisms of any other equal or higher ranked taxon. The taxon may be at any level. If the taxon is species, then this is the same as the class species as a collection of organisms. When defining a taxon, it is generally understood that members include both living organisms and dead organisms that are known through specimens or observations." ; rdfs:subClassOf obo:PCO_0000000 . obo:RO_0002450 a rdf:Property ; rdfs:label "directly positively regulates activity of" ; rdfs:comment """The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.""" ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; rdfs:subPropertyOf obo:RO_0002448 . obo:RO_0002449 a rdf:Property ; rdfs:label "directly negatively regulates activity of" ; rdfs:comment """The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.""" ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; rdfs:subPropertyOf obo:RO_0002448 . obo:RO_0002595 a rdf:Property ; rdfs:label "causal relation between material entity and a process" ; rdfs:comment "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000015 ; rdfs:subPropertyOf obo:RO_0002410 . obo:RO_0002448 a rdf:Property ; rdfs:label "directly regulates activity of" ; rdfs:comment """The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.""" ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; rdfs:subPropertyOf obo:RO_0011002 , obo:RO_0002436 . obo:RO_0002351 a rdf:Property ; rdfs:label "has member"@en ; rdfs:comment "has member is a mereological relation between a collection and an item." ; rdfs:range obo:CARO_0001010 , obo:NCBITaxon_9606 , obo:PCO_0000060 , obo:PCO_0000049 ; rdfs:subPropertyOf obo:BFO_0000051 . obo:RO_0011002 a rdf:Property ; rdfs:label "regulates activity of" ; rdfs:comment "The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B." ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; rdfs:subPropertyOf obo:RO_0002566 . obo:RO_0000087 a rdf:Property ; rdfs:label "has role"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000023 ; rdfs:subPropertyOf obo:RO_0000053 . obo:RO_0002215 a rdf:Property ; rdfs:label "capable of"@en ; rdfs:comment "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000015 ; rdfs:subPropertyOf obo:RO_0002216 . obo:RO_0000085 a rdf:Property ; rdfs:label "has function"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000034 ; rdfs:subPropertyOf obo:RO_0000053 . obo:RO_0000091 a rdf:Property ; rdfs:label "has disposition"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000016 ; rdfs:subPropertyOf obo:RO_0000053 . obo:RO_0002434 a rdf:Property ; rdfs:label "interacts with" ; rdfs:comment "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." ; rdfs:seeAlso obo:MI_0914 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 . obo:RO_0002002 a rdf:Property ; rdfs:label "has 2D boundary"@en ; rdfs:comment "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity"@en ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000141 . obo:RO_0001025 a rdf:Property ; rdfs:label "located in"@en ; rdfs:comment "a relation between two independent continuants, the target and the location, in which the target is entirely within the location"@en ; rdfs:domain obo:BFO_0000004 ; rdfs:range . obo:PCO_0000048 a rdfs:Class ; rdfs:label "invisible to unaided eye"@en ; rdfs:comment "A physical object quality that is inhered in a material entity that is too small to be viewed by the unaided eye."@en ; rdfs:subClassOf obo:PATO_0001241 . obo:PCO_0001000 a rdfs:Class ; rdfs:label "pair of interacting organisms"@en ; rdfs:comment "A collection of organisms that consists of exactly two organism, viruses, or viroids that are interacting with each other."@en ; rdfs:subClassOf obo:PCO_0000000 . obo:PCO_0000008 a rdfs:Class ; rdfs:label "population growth rate"@en ; rdfs:comment "The rate of growth of a population." ; rdfs:subClassOf obo:PATO_0000161 . obo:NCBITaxon_117571 a rdfs:Class ; rdfs:label "Euteleostomi" ; rdfs:subClassOf obo:NCBITaxon_117570 . obo:PCO_0000003 a rdfs:Class ; rdfs:label "quality of a population"@en ; rdfs:comment "A quality that inheres in a population of organisms."@en ; rdfs:subClassOf obo:PATO_0002003 . obo:PATO_0002303 a rdfs:Class ; rdfs:label "decreased object quality" ; rdfs:comment "A quality of an object that has a value that is decreased compared to normal or average." ; rdfs:subClassOf obo:PATO_0001241 , obo:PATO_0002301 . obo:BFO_0000017 a rdfs:Class ; rdfs:label "realizable entity"@en ; rdfs:comment "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en ; rdfs:subClassOf obo:BFO_0000020 . obo:PCO_0000037 a rdfs:Class ; rdfs:label "potluck"@en ; rdfs:comment "A human social gathering at which each participant is expected to bring food to share. A potluck also can be party, a social meal, or some other type of social gathering."@en ; rdfs:subClassOf obo:PCO_0000033 . obo:BFO_0000062 a rdf:Property ; rdfs:label "preceded by"@en ; rdfs:comment "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; rdfs:subPropertyOf obo:RO_0002086 . obo:BFO_0000063 a rdf:Property ; rdfs:label "precedes"@en ; rdfs:comment "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; rdfs:subPropertyOf obo:RO_0002222 . obo:RO_0002479 a rdf:Property ; rdfs:label "has part that occurs in" ; rdfs:comment "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000004 . obo:BFO_0000066 a rdf:Property ; rdfs:label "occurs in"@en ; rdfs:comment "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000004 . obo:RO_0002501 a rdf:Property ; rdfs:label "causal relation between processes" ; rdfs:comment "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; rdfs:subPropertyOf obo:RO_0002410 . obo:RO_0002233 a rdf:Property ; rdfs:label "has input"@en ; rdfs:comment "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000002 ; rdfs:subPropertyOf obo:RO_0000057 . obo:RO_0002211 a rdf:Property ; rdfs:label "regulates"@en ; rdfs:comment "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000015 ; rdfs:subPropertyOf obo:RO_0002411 . obo:BFO_0000055 a rdf:Property ; rdfs:label "realizes"@en ; rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000017 . obo:RO_0000057 a rdf:Property ; rdfs:label "has participant"@en ; rdfs:comment "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000002 . obo:RO_0002222 a rdf:Property ; rdfs:label "temporally related to"@en ; rdfs:comment "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 . obo:RO_0002334 a rdf:Property ; rdfs:label "regulated by"@en ; rdfs:comment "inverse of regulates" ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000015 ; rdfs:subPropertyOf obo:RO_0002427 . obo:IAO_8000014 a rdfs:Class ; rdfs:label "generated ontology module"@en ; rdfs:comment "An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV."@en ; rdfs:subClassOf obo:IAO_8000000 . obo:RO_0000058 a rdf:Property ; rdfs:label "is concretized as"@en ; rdfs:comment "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."@en ; rdfs:domain obo:BFO_0000031 ; rdfs:range obo:BFO_0000020 . obo:NCBITaxon_7711 a rdfs:Class ; rdfs:label "Chordata" ; rdfs:subClassOf obo:NCBITaxon_33511 . obo:NCBITaxon_1338369 a rdfs:Class ; rdfs:label "Dipnotetrapodomorpha" ; rdfs:subClassOf obo:NCBITaxon_8287 . obo:NCBITaxon_131567 a rdfs:Class ; rdfs:label "cellular organisms" . obo:IAO_8000003 a rdfs:Class ; rdfs:label "main release ontology module"@en ; rdfs:comment "An ontology module that is intended to be the primary release product and the one consumed by the majority of tools."@en ; rdfs:subClassOf obo:IAO_8000000 . obo:PCO_0000021 a rdfs:Class ; rdfs:label "population extinction"@en ; rdfs:comment "A population process that ultimately leads to the death of all individuals in a population."@en ; rdfs:subClassOf obo:PCO_0000005 . obo:PCO_0000016 a rdfs:Class ; rdfs:label "obsolete symbiont role"@en ; rdfs:subClassOf . obo:GO_0051703 a rdfs:Class ; rdfs:label "biological process involved in intraspecies interaction between organisms" ; rdfs:comment "Any process in which an organism has an effect on an organism of the same species." ; rdfs:subClassOf obo:GO_0008150 . obo:CARO_0010004 a rdfs:Class ; rdfs:label "organism" ; rdfs:comment "An individual member of a clade." ; rdfs:subClassOf obo:CARO_0001010 . obo:NCBITaxon_314146 a rdfs:Class ; rdfs:label "Euarchontoglires" ; rdfs:subClassOf obo:NCBITaxon_1437010 . obo:PCO_0000027 a rdfs:Class ; rdfs:label "collection of humans"@en ; rdfs:comment "A collection of organisms of the same species that has as members only humans." ; rdfs:subClassOf obo:PCO_0000018 . obo:BFO_0000006 a rdfs:Class ; rdfs:label "spatial region"@en ; rdfs:subClassOf obo:BFO_0000141 . obo:IAO_8000000 a rdfs:Class ; rdfs:label "ontology module"@en ; rdfs:subClassOf obo:IAO_0000102 . obo:PCO_0000010 a rdfs:Class ; rdfs:label "community species richness"@en ; rdfs:comment "The number of different species represented in an ecological community."@en ; rdfs:subClassOf obo:PCO_0000004 . obo:STATO_0000047 a rdfs:Class ; rdfs:label "count"@en ; rdfs:comment "a count is a data item denoted by an integer and represented the number of instances or occurences of an entity"@en ; rdfs:subClassOf obo:IAO_0000109 . obo:IAO_8000018 a rdfs:Class ; rdfs:label "obo basic subset ontology module"@en ; rdfs:comment """A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports"""@en ; rdfs:seeAlso ; rdfs:subClassOf obo:IAO_8000017 . obo:GO_0007610 a rdfs:Class ; rdfs:label "behavior" ; rdfs:comment "The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity." ; rdfs:subClassOf obo:GO_0008150 . obo:PCO_0000025 a rdfs:Class ; rdfs:label "obsolete red population"@en ; rdfs:comment "This is an example population added to demonstrate the modeling pattern for collections of organisms." ; rdfs:subClassOf . obo:PATO_0001018 a rdfs:Class ; rdfs:label "physical quality" ; rdfs:comment "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." ; rdfs:subClassOf obo:PATO_0001241 . obo:GO_0016740 a rdfs:Class ; rdfs:label "transferase activity" ; rdfs:subClassOf obo:GO_0003824 . obo:PATO_0001415 a rdfs:Class ; rdfs:label "morbidity" ; rdfs:comment "A quality inhering in a population by virtue of the proportion of its members that are ill at a given time." ; rdfs:subClassOf obo:PATO_0002003 . obo:BFO_0000029 a rdfs:Class ; rdfs:label "site"@en ; rdfs:subClassOf obo:BFO_0000141 . obo:PATO_0002300 a rdfs:Class ; rdfs:label "increased quality" ; rdfs:comment "A quality that has a value that is increased compared to normal or average." ; rdfs:subClassOf obo:PATO_0000001 , obo:PATO_0000069 . obo:NCBITaxon_8287 a rdfs:Class ; rdfs:label "Sarcopterygii" ; rdfs:subClassOf obo:NCBITaxon_117571 . obo:IAO_8000010 a rdfs:Class ; rdfs:label "exclusion subset ontology module"@en ; rdfs:comment "A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes."@en ; rdfs:subClassOf obo:IAO_8000006 . obo:NCBITaxon_33208 a rdfs:Class ; rdfs:label "Metazoa" ; rdfs:subClassOf obo:NCBITaxon_33154 . obo:PCO_0000054 a rdfs:Class ; rdfs:label "number of generations of multicellular organism"@en ; rdfs:comment "A count data item of the number of steps in the line of descent from a common ancestor for a multicellular organism." ; rdfs:subClassOf obo:STATO_0000047 . obo:IAO_0000136 a rdf:Property ; rdfs:label "is about"@en ; rdfs:comment "A (currently) primitive relation that relates an information artifact to an entity."@en ; rdfs:range obo:CARO_0000012 . obo:ECOCORE_00000045 a rdfs:Class ; rdfs:label "symbiotroph" ; rdfs:comment "heterotroph that acquires nutrition from a symbiont" ; rdfs:subClassOf obo:CARO_0001010 . obo:NCBITaxon_33511 a rdfs:Class ; rdfs:label "Deuterostomia" ; rdfs:subClassOf obo:NCBITaxon_33213 . obo:PCO_0000076 a rdfs:Class ; rdfs:label "gamma diversity"@en ; rdfs:comment "A community species diversity that is the total species diversity in a landscape. The area or landscape of interest may be of very different sizes in different situations, but it should encompass multiple sites or habitats as measured by alpha diversity." ; rdfs:subClassOf obo:PCO_0000019 . obo:PATO_0001241 a rdfs:Class ; rdfs:label "physical object quality" ; rdfs:comment "A quality which inheres in a continuant." ; rdfs:subClassOf obo:PATO_0000001 . obo:PCO_0000047 a rdfs:Class ; rdfs:label "tidal mangrove shrubland community"@en ; rdfs:comment "An ecological community which is composed primarily of dwarf or short mangroves, often populations of Laguncularia racemosa, Avicennia germinans, Sarcocornia pacifica, or Batis maritima."@en ; rdfs:subClassOf obo:PCO_0000002 . obo:BFO_0000050 a rdf:Property ; rdfs:label "part of"@en ; rdfs:comment "a core relation that holds between a part and its whole"@en ; rdfs:seeAlso ; rdfs:range . obo:PCO_0000080 a rdfs:Class ; rdfs:label "plant density of an ecological community"@en ; rdfs:comment "The density of plants in an ecological community (multiple species), often measured as the number of plants per area." ; rdfs:subClassOf obo:PCO_0000004 , obo:PCO_0000077 . obo:PCO_0000004 a rdfs:Class ; rdfs:label "quality of an ecological community"@en ; rdfs:comment "A quality that inheres in a community."@en ; rdfs:subClassOf obo:PATO_0002003 . a rdfs:Class . obo:PCO_0000058 a rdfs:Class ; rdfs:label "overcrowded human population"@en ; rdfs:comment "A quality of a human population such that the density humans in an area is increased beyond sustainable levels." ; rdfs:subClassOf obo:PCO_0000057 . obo:NCBITaxon_2157 a rdfs:Class ; rdfs:label "Archaea" ; rdfs:subClassOf obo:NCBITaxon_131567 . obo:NCBITaxon_1437010 a rdfs:Class ; rdfs:label "Boreoeutheria" ; rdfs:subClassOf obo:NCBITaxon_9347 . obo:IAO_8000007 a rdfs:Class ; rdfs:label "curation subset ontology module"@en ; rdfs:comment "A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation."@en ; rdfs:subClassOf obo:IAO_8000006 . obo:BFO_0000040 a rdfs:Class ; rdfs:label "material entity"@en ; rdfs:comment "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en ; rdfs:subClassOf obo:BFO_0000004 . obo:PATO_0001790 a rdfs:Class ; rdfs:label "decreased mass density" ; rdfs:comment "A density which is lower relative to the normal or average." ; rdfs:subClassOf obo:PATO_0001164 , obo:PATO_0002303 . obo:NCBITaxon_32525 a rdfs:Class ; rdfs:label "Theria " ; rdfs:subClassOf obo:NCBITaxon_40674 . obo:BFO_0000141 a rdfs:Class ; rdfs:label "immaterial entity"@en ; rdfs:subClassOf obo:BFO_0000004 . obo:GO_0016772 a rdfs:Class ; rdfs:label "transferase activity, transferring phosphorus-containing groups" ; rdfs:subClassOf obo:GO_0016740 . obo:PCO_0000020 a rdfs:Class ; rdfs:label "family"@en ; rdfs:comment "A domestic group, or a number of domestic groups linked through descent (demonstrated or stipulated) from a common ancestor, marriage, or adoption."@en ; rdfs:subClassOf obo:PCO_0000018 . obo:BFO_0000005 a rdfs:Class ; rdfs:label "obsolete dependent continuant"@en ; rdfs:comment "A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities."@en ; rdfs:subClassOf . obo:NCBITaxon_3041 a rdfs:Class ; rdfs:label "Chlorophyta" ; rdfs:subClassOf obo:NCBITaxon_33090 . obo:PCO_0000049 a rdfs:Class ; rdfs:label "microbe"@en ; rdfs:subClassOf obo:CARO_0001010 . obo:IAO_8000002 a rdfs:Class ; rdfs:label "editors ontology module"@en ; rdfs:comment "An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users."@en ; rdfs:subClassOf obo:IAO_8000000 . obo:IAO_8000017 a rdfs:Class ; rdfs:label "ontology module subsetted by expressivity"@en ; rdfs:subClassOf obo:IAO_8000006 . obo:PCO_0000009 a rdfs:Class ; rdfs:label "obsolete carrying capacity"@en ; rdfs:comment "The maximum number of individuals that can be supported in a population that is growing according to logistic growth." ; rdfs:subClassOf . obo:PCO_0000061 a rdfs:Class ; rdfs:label "parasite isolate population"@en ; rdfs:comment "A microbial population of parasites that is defined by shared features such as genetic markers reflecting a common origin and distinguishing the population from other related parasite populations." ; rdfs:subClassOf obo:PCO_0000050 , obo:PCO_0000053 . obo:BFO_0000023 a rdfs:Class ; rdfs:label "role"@en ; rdfs:comment "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en ; rdfs:subClassOf obo:BFO_0000017 . obo:PATO_0002003 a rdfs:Class ; rdfs:label "population quality" ; rdfs:comment "A quality that inheres in an entire population or part of a population." ; rdfs:subClassOf obo:PATO_0001241 . obo:PCO_0000057 a rdfs:Class ; rdfs:label "overcrowded population"@en ; rdfs:comment "An increased mass density of a population of organisms such that the density of organisms in an area is increased beyond sustainable levels." ; rdfs:subClassOf obo:PCO_0000003 . obo:BFO_0000027 a rdfs:Class ; rdfs:label "object aggregate"@en ; rdfs:subClassOf obo:BFO_0000040 . obo:PCO_0000074 a rdfs:Class ; rdfs:label "alpha diversity"@en ; rdfs:comment "A community species diversity that is the mean species diversity at a site or within a specific habitat." ; rdfs:subClassOf obo:PCO_0000019 . obo:PCO_0000002 a rdfs:Class ; rdfs:label "ecological community"@en ; rdfs:comment "A multi-species collection of organisms of at least two different species, living in a particular area. Must have at least two populations of different species as members."@en ; rdfs:subClassOf obo:PCO_0000029 . obo:GO_0008150 a rdfs:Class ; rdfs:label "biological_process" ; rdfs:comment "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." ; rdfs:subClassOf obo:BFO_0000015 . obo:PATO_0001019 a rdfs:Class ; rdfs:label "mass density" ; rdfs:comment "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size." ; rdfs:subClassOf obo:PATO_0001018 . obo:PCO_0000035 a rdfs:Class ; rdfs:label "party"@en ; rdfs:comment "A human social gathering in which the intention is to have a good time. Often the intention is to celebrate something like a birthday, anniversary, or holiday, but there is not always a purpose."@en ; rdfs:subClassOf obo:PCO_0000033 . obo:PCO_0000024 a rdfs:Class ; rdfs:label "household"@en ; rdfs:comment "An organismal entity that consists of one or more people who live in the same dwelling and also share at meals or living accommodation, and may consist of a single family or some other grouping of people." ; rdfs:subClassOf obo:PCO_0000031 . obo:RO_0002321 a rdf:Property ; rdfs:label "ecologically related to"@en ; rdfs:comment "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" ; rdfs:range . obo:GO_0003674 a rdfs:Class ; rdfs:label "molecular_function" ; rdfs:subClassOf obo:BFO_0000015 . obo:IAO_8000013 a rdfs:Class ; rdfs:label "reasoned ontology module"@en ; rdfs:comment "An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available."@en ; rdfs:seeAlso ; rdfs:subClassOf obo:IAO_8000000 . obo:PATO_0001338 a rdfs:Class ; rdfs:label "mixed sex" ; rdfs:comment "A biological sex quality inhering in a population of multiple sexes." ; rdfs:subClassOf obo:PATO_0002003 . obo:NCBITaxon_58024 a rdfs:Class ; rdfs:label "Spermatophyta" ; rdfs:subClassOf obo:NCBITaxon_78536 . obo:PCO_0000077 a rdfs:Class ; rdfs:label "plant density"@en ; rdfs:subClassOf obo:PATO_0001019 . obo:CARO_0000012 a rdfs:Class ; rdfs:label "multicellular organism" ; rdfs:comment "Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell." ; rdfs:subClassOf obo:CARO_0010004 . obo:BFO_0000016 a rdfs:Class ; rdfs:label "disposition"@en ; rdfs:subClassOf obo:BFO_0000017 . obo:NCBITaxon_3398 a rdfs:Class ; rdfs:label "Magnoliopsida" ; rdfs:subClassOf obo:NCBITaxon_58024 . obo:NCBITaxon_7742 a rdfs:Class ; rdfs:label "Vertebrata " ; rdfs:subClassOf obo:NCBITaxon_89593 . obo:NCBITaxon_207598 a rdfs:Class ; rdfs:label "Homininae" ; rdfs:subClassOf obo:NCBITaxon_9604 . obo:PCO_0000050 a rdfs:Class ; rdfs:label "collection of microbial organisms"@en ; rdfs:comment "A collection of organisms consisting of two or more microbes."@en . obo:IAO_8000006 a rdfs:Class ; rdfs:label "subset ontology module"@en ; rdfs:comment "An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms."@en ; rdfs:seeAlso , ; rdfs:subClassOf obo:IAO_8000000 . obo:PCO_0000038 a rdfs:Class ; rdfs:label "wedding"@en ; rdfs:comment "A human social gathering at which two people are married. May include a legal or social ceremony."@en ; rdfs:subClassOf obo:PCO_0000033 . obo:NCBITaxon_9443 a rdfs:Class ; rdfs:label "Primates" ; rdfs:subClassOf obo:NCBITaxon_314146 . obo:PATO_0000911 a rdfs:Class ; rdfs:label "decreased rate" ; rdfs:comment "A rate which is relatively low." ; rdfs:subClassOf obo:PATO_0000161 , obo:PATO_0002302 . obo:IAO_0000030 a rdfs:Class ; rdfs:label "information content entity"@en ; rdfs:subClassOf obo:BFO_0000031 . obo:PCO_0000013 a rdfs:Class ; rdfs:label "exponential population growth" ; rdfs:comment "A population growth process that leads to an exponential increase in the number of individuals in a population." ; rdfs:subClassOf obo:PCO_0000011 . obo:NCBITaxon_35493 a rdfs:Class ; rdfs:label "Streptophyta" ; rdfs:subClassOf obo:NCBITaxon_33090 . obo:GO_0051704 a rdfs:Class ; rdfs:label "multi-organism process" ; rdfs:comment "A biological process which involves another organism of the same or different species." ; rdfs:subClassOf obo:GO_0008150 . a rdfs:Class ; rdfs:label "obsolete microbial population"@en ; rdfs:comment "A population of organisms consisting of only microbes of the same species, that live in the same place."@en ; rdfs:subClassOf . obo:BFO_0000001 a rdfs:Class ; rdfs:label "entity"@en . obo:GO_0003824 a rdfs:Class ; rdfs:label "catalytic activity" ; rdfs:subClassOf obo:GO_0003674 . obo:NCBITaxon_9606 a rdfs:Class ; rdfs:label "Homo sapiens" ; rdfs:subClassOf obo:NCBITaxon_9605 . obo:NCBITaxon_1437180 a rdfs:Class ; rdfs:label "Acrogymnospermae" ; rdfs:subClassOf obo:NCBITaxon_58024 . obo:PCO_0000031 a rdfs:Class ; rdfs:label "organismal entity"@en ; rdfs:comment "A material entity that is one or more organisms, viruses or viroids." ; rdfs:subClassOf obo:BFO_0000040 . obo:PATO_0000070 a rdfs:Class ; rdfs:label "amount" ; rdfs:comment "The number of entities of this type that are part of the whole organism." ; rdfs:subClassOf obo:PATO_0000068 . a rdf:Property ; rdfs:label "reciprocal_of" ; rdfs:comment "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." ; rdfs:range . obo:IAO_8000011 a rdfs:Class ; rdfs:label "external import ontology module"@en ; rdfs:comment "An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach."@en ; rdfs:subClassOf obo:IAO_8000005 . obo:BFO_0000004 a rdfs:Class ; rdfs:label "independent continuant"@en ; rdfs:comment "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ; rdfs:subClassOf obo:BFO_0000002 . obo:NCBITaxon_33154 a rdfs:Class ; rdfs:label "Opisthokonta" ; rdfs:subClassOf obo:NCBITaxon_2759 . obo:PCO_1000000 a rdfs:Class ; rdfs:label "migratory population"@en ; rdfs:comment "A population which is participating in a migration process." ; rdfs:subClassOf obo:PCO_0000001 . obo:NCBITaxon_33090 a rdfs:Class ; rdfs:label "Viridiplantae" ; rdfs:subClassOf obo:NCBITaxon_2759 . obo:PATO_0001164 a rdfs:Class ; rdfs:label "dense" ; rdfs:comment "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density." ; rdfs:subClassOf obo:PATO_0001019 . obo:PCO_0000014 a rdfs:Class ; rdfs:label "obsolete predator role"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "obsolete microbe"@en ; rdfs:subClassOf . obo:PCO_0000060 a rdfs:Class ; rdfs:label "microbial parasite"@en ; rdfs:comment "An organism or virus or viroid that is a microbe and a parasite." ; rdfs:subClassOf obo:ECOCORE_00000146 , obo:PCO_0000049 . obo:GO_0044419 a rdfs:Class ; rdfs:label "biological process involved in interspecies interaction between organisms" ; rdfs:comment "Any process evolved to enable an interaction with an organism of a different species." ; rdfs:subClassOf obo:GO_0008150 . obo:BFO_0000015 a rdfs:Class ; rdfs:label "process"@en ; rdfs:comment "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en ; rdfs:subClassOf obo:BFO_0000003 . obo:PCO_0000064 a rdfs:Class ; rdfs:label "inverse Simpson diversity index"@en ; rdfs:comment "A community species diversity metric that is quantified via the following formula: the sum of squared proportion of species i relative to the total number of species (pi)." ; rdfs:subClassOf obo:PCO_0000019 . obo:PATO_0002301 a rdfs:Class ; rdfs:label "decreased quality" ; rdfs:comment "A quality that has a value that is decreased compared to normal or average." ; rdfs:subClassOf obo:PATO_0000001 , obo:PATO_0000069 . obo:NCBITaxon_314295 a rdfs:Class ; rdfs:label "Hominoidea" ; rdfs:subClassOf obo:NCBITaxon_9526 . obo:NCBITaxon_7776 a rdfs:Class ; rdfs:label "Gnathostomata " ; rdfs:subClassOf obo:NCBITaxon_7742 . obo:PCO_0000073 a rdfs:Class ; rdfs:label "alga excluding Cyanobacteria"@en ; rdfs:comment "An organism that is part of a polyphyletic group of mostly photosynthetic Eukaryotes encompassing green plants excluding Embriophyta (land plants). Included organisms range from unicellular microalgae, such as Chlorella and diatoms to multicellular forms such as giant kelp." ; rdfs:subClassOf obo:CARO_0010004 . obo:PATO_0001788 a rdfs:Class ; rdfs:label "increased mass density" ; rdfs:comment "A density which is higher relative to the normal or average." ; rdfs:subClassOf obo:PATO_0001164 , obo:PATO_0002305 . obo:PCO_0000053 a rdfs:Class ; rdfs:label "microbial population"@en ; rdfs:comment "A population of organisms consisting of only microbes of the same species, that live in the same place."@en ; rdfs:subClassOf obo:PCO_0000001 . a rdfs:Class ; rdfs:label "obsolete single species collection of microbes"@en ; rdfs:comment "A single-species collection of organisms that consists of two or more microbes of the same species and no members of any other species."@en ; rdfs:subClassOf . obo:PCO_0000005 a rdfs:Class ; rdfs:label "population process"@en ; rdfs:comment "A process that has as primary participant a population. Includes processes such as population growth, extinction, evolution, selection, and adaptation. Population processes may depend on the processes of individual organisms {e.g., population growth reflects the cumulative multicellular organism reproduction (GO:0032504) and death (GO:0016265) of all individuals in a population}, but cannot be described for an individual organism. Some of these processes (e.g., evolution, extinction) can also occur at the species level, so PCO distinguishes between, for example, population extinction and species extinction."@en ; rdfs:subClassOf obo:BFO_0000015 . obo:PCO_0000039 a rdfs:Class ; rdfs:label "baby shower"@en ; rdfs:comment "A human social gathering at which the key participant is an expectant parent and other guests bring presents for the soon to be born baby."@en ; rdfs:subClassOf obo:PCO_0000033 . obo:PATO_0000069 a rdfs:Class ; rdfs:label "deviation (from_normal)" ; rdfs:comment "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." ; rdfs:subClassOf obo:PATO_0000068 . obo:BFO_0000002 a rdfs:Class ; rdfs:label "continuant"@en ; rdfs:comment "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ; rdfs:subClassOf obo:BFO_0000001 . obo:PCO_1000001 a rdfs:Class ; rdfs:label "population migration"@en ; rdfs:comment "A population process during which a population moves from one area to another." ; rdfs:subClassOf obo:PCO_0000005 . obo:PATO_0000461 a rdfs:Class ; rdfs:label "normal" ; rdfs:comment "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average." ; rdfs:subClassOf obo:PATO_0000068 . obo:GO_0016301 a rdfs:Class ; rdfs:label "kinase activity" ; rdfs:subClassOf obo:GO_0016772 . obo:PATO_0002305 a rdfs:Class ; rdfs:label "increased object quality" ; rdfs:comment "A quality of an object that has a value that is increased compared to normal or average." ; rdfs:subClassOf obo:PATO_0001241 , obo:PATO_0002300 . obo:PATO_0000912 a rdfs:Class ; rdfs:label "increased rate" ; rdfs:comment "A rate which is relatively high." ; rdfs:subClassOf obo:PATO_0000161 , obo:PATO_0002304 . obo:PATO_0000161 a rdfs:Class ; rdfs:label "rate" ; rdfs:comment "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." ; rdfs:subClassOf obo:PATO_0002062 . obo:PCO_0000034 a rdfs:Class ; rdfs:label "human community event"@en ; rdfs:comment "A human social event in which humans living in the same area or neighborhood gather to carry out activiites relevent to the people living in the area."@en ; rdfs:subClassOf obo:PCO_0000033 . obo:NCBITaxon_4751 a rdfs:Class ; rdfs:label "Fungi" ; rdfs:subClassOf obo:NCBITaxon_33154 . obo:BFO_0000019 a rdfs:Class ; rdfs:label "quality"@en ; rdfs:subClassOf obo:BFO_0000020 . obo:PATO_0001236 a rdfs:Class ; rdfs:label "process quality" ; rdfs:comment "A quality which inheres in an process." ; rdfs:subClassOf obo:PATO_0000001 . obo:NCBITaxon_58023 a rdfs:Class ; rdfs:label "Tracheophyta" ; rdfs:subClassOf obo:NCBITaxon_3193 . obo:PCO_1000004 a rdfs:Class ; rdfs:label "microbial community"@en ; rdfs:comment "An ecological community which is composed of co-existing populations of microbial organisms that interact, directly or indirectly, such that they impact one another's ecological fitness." ; rdfs:subClassOf obo:PCO_0000002 , obo:PCO_0000051 . obo:PCO_0000078 a rdfs:Class ; rdfs:label "seedling density"@en ; rdfs:comment "The density of seedlings in an ecological community or population, often measured as the number of seedlings per area." ; rdfs:subClassOf obo:PCO_0000077 . obo:PATO_0000470 a rdfs:Class ; rdfs:label "increased amount" ; rdfs:comment "An amount which is relatively high." ; rdfs:subClassOf obo:PATO_0000070 , obo:PATO_0000467 , obo:PATO_0002300 . a rdfs:Class . obo:GO_0035176 a rdfs:Class ; rdfs:label "social behavior" ; rdfs:comment "Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group." ; rdfs:subClassOf obo:GO_0007610 , obo:GO_0051703 . obo:PCO_0000052 a rdfs:Class ; rdfs:label "single species collection of microbes"@en ; rdfs:comment "A single-species collection of organisms that consists of two or more microbes of the same species and no members of any other species."@en ; rdfs:subClassOf obo:PCO_0000050 . obo:IAO_8000016 a rdfs:Class ; rdfs:label "taxonomic bridge ontology module"@en ; rdfs:subClassOf obo:IAO_8000004 . obo:PCO_0000023 a rdfs:Class ; rdfs:label "community species evenness"@en ; rdfs:comment "A quality of an ecological community that reflects how close in abundance all species in a community are."@en ; rdfs:subClassOf obo:PCO_0000004 . obo:NCBITaxon_3193 a rdfs:Class ; rdfs:label "Embryophyta" ; rdfs:subClassOf obo:NCBITaxon_131221 . obo:NCBITaxon_32523 a rdfs:Class ; rdfs:label "Tetrapoda" ; rdfs:subClassOf obo:NCBITaxon_1338369 . obo:PCO_0000028 a rdfs:Class ; rdfs:label "obsolete community"@en ; rdfs:comment "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other." ; rdfs:subClassOf . obo:PCO_0000012 a rdfs:Class ; rdfs:label "logistic population growth" ; rdfs:comment "A population process that leads to an increase in the numbers of individuals in a population following a logistic (S-shaped) curve. Generally occurs when the population has a carrying capacity in a particular habitat." ; rdfs:subClassOf obo:PCO_0000011 . obo:PCO_0000063 a rdfs:Class ; rdfs:label "Simpson diversity index"@en ; rdfs:comment "A community species diversity metric that is quantified via the following formula: the reciprocal of the sum of squared proportion of species i relative to the total number of species (pi)." ; rdfs:subClassOf obo:PCO_0000019 . obo:IAO_8000001 a rdfs:Class ; rdfs:label "base ontology module"@en ; rdfs:comment "An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies."@en ; rdfs:seeAlso ; rdfs:subClassOf obo:IAO_8000000 . obo:NCBITaxon_9526 a rdfs:Class ; rdfs:label "Catarrhini" ; rdfs:subClassOf obo:NCBITaxon_314293 . obo:BFO_0000020 a rdfs:Class ; rdfs:label "specifically dependent continuant"@en ; rdfs:comment "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en ; rdfs:subClassOf obo:BFO_0000002 . obo:PCO_0000001 a rdfs:Class ; rdfs:label "population of organisms"@en ; rdfs:comment "A collection of organisms, all of the same species, that live in the same place."@en ; rdfs:subClassOf obo:PCO_0000018 . a rdfs:Class ; rdfs:label "obsolete invisible to unaided eye"@en ; rdfs:comment "A physical object quality that is inhered in a material entity that is too small to be viewed by the unaided eye."@en ; rdfs:subClassOf . obo:PCO_0000082 a rdfs:Class ; rdfs:label "seedling density of an ecological community"@en ; rdfs:comment "The density of seedlings in an ecological community (multiple species), often measured as the number of plants per area." ; rdfs:subClassOf obo:PCO_0000004 , obo:PCO_0000078 . obo:NCBITaxon_2759 a rdfs:Class ; rdfs:label "Eukaryota" ; rdfs:subClassOf obo:NCBITaxon_131567 . obo:NCBITaxon_9605 a rdfs:Class ; rdfs:label "Homo" ; rdfs:subClassOf obo:NCBITaxon_207598 . obo:PCO_0000017 a rdfs:Class ; rdfs:label "species as a collection of organisms"@en ; rdfs:comment "A collection of organisms that has as parts every organism of a species and no organisms of any other species."@en ; rdfs:subClassOf obo:PCO_0000018 , obo:PCO_0000059 . obo:IAO_8000012 a rdfs:Class ; rdfs:label "species subset ontology module"@en ; rdfs:comment "A subset ontology that is crafted to either include or exclude a taxonomic grouping of species."@en ; rdfs:seeAlso ; rdfs:subClassOf obo:IAO_8000006 . obo:ECOCORE_00000146 a rdfs:Class ; rdfs:label "parasite" ; rdfs:comment "A symbiotroph that reduces the fitness, survival, or growth of its symbiont, often called a host" ; rdfs:subClassOf obo:ECOCORE_00000045 . obo:NCBITaxon_89593 a rdfs:Class ; rdfs:label "Craniata " ; rdfs:subClassOf obo:NCBITaxon_7711 . a rdfs:Class ; rdfs:label "obsolete multi-species collection of microbes"@en ; rdfs:comment "A multi-species collection of organisms that consists of two or more microbes from at least two species."@en ; rdfs:subClassOf . obo:PATO_0002302 a rdfs:Class ; rdfs:label "decreased process quality" ; rdfs:comment "A quality of a process that has a value that is decreased compared to normal or average." ; rdfs:subClassOf obo:PATO_0001236 , obo:PATO_0002301 . obo:IAO_8000005 a rdfs:Class ; rdfs:label "import ontology module"@en ; rdfs:comment "A subset ontology module that is intended to be imported from another ontology."@en ; rdfs:seeAlso ; rdfs:subClassOf obo:IAO_8000006 . obo:IAO_0000109 a rdfs:Class ; rdfs:label "measurement datum"@en ; rdfs:comment "A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device."@en ; rdfs:subClassOf obo:IAO_0000027 . obo:PCO_0000006 a rdfs:Class ; rdfs:label "population birth rate"@en ; rdfs:comment "The rate of birth of a population of organisms." ; rdfs:subClassOf obo:PATO_0000161 . obo:NCBITaxon_117570 a rdfs:Class ; rdfs:label "Teleostomi" ; rdfs:subClassOf obo:NCBITaxon_7776 . obo:PCO_0000030 a rdfs:Class ; rdfs:label "agricultural household"@en ; rdfs:comment "A household in which the majority of the income of its members is derived from agricultural activities." ; rdfs:subClassOf obo:PCO_0000024 . obo:PCO_0000033 a rdfs:Class ; rdfs:label "human social gathering activity"@en ; rdfs:comment "A type of social behavior in which a collection of humans intentionally gathers together on a temporary basis to engage socially."@en ; rdfs:subClassOf obo:GO_0035176 . obo:IAO_0000102 a rdfs:Class ; rdfs:label "data about an ontology part"@en ; rdfs:comment "Data about an ontology part is a data item about a part of an ontology, for example a term"@en ; rdfs:subClassOf obo:IAO_0000027 . obo:IAO_8000004 a rdfs:Class ; rdfs:label "bridge ontology module"@en ; rdfs:comment "An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module."@en ; rdfs:seeAlso ; rdfs:subClassOf obo:IAO_8000000 . obo:PATO_0001997 a rdfs:Class ; rdfs:label "decreased amount" ; rdfs:comment "An amount which is relatively low." ; rdfs:subClassOf obo:PATO_0000070 , obo:PATO_0000467 , obo:PATO_0002301 . a rdfs:Class ; rdfs:label "obsolete collection of microbial organisms"@en ; rdfs:comment "A collection of organisms consisting of two or more microbes."@en ; rdfs:subClassOf . obo:PATO_0000068 a rdfs:Class ; rdfs:label "qualitative" ; rdfs:comment "TODO: define this or obsolete it and move children somewhere else." ; rdfs:subClassOf obo:PATO_0000001 . obo:IAO_8000009 a rdfs:Class ; rdfs:label "single layer subset ontology module"@en ; rdfs:comment "A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint."@en ; rdfs:subClassOf obo:IAO_8000006 . obo:PCO_0000032 a rdfs:Class ; rdfs:label "biological family"@en ; rdfs:comment "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other." ; rdfs:subClassOf obo:PCO_0000020 . obo:PATO_0000467 a rdfs:Class ; rdfs:label "present" ; rdfs:comment "A quality inhering in a bearer by virtue of the bearer's existence." ; rdfs:subClassOf obo:PATO_0000070 . obo:PATO_0000001 a rdfs:Class ; rdfs:label "quality" ; rdfs:comment "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" ; rdfs:subClassOf obo:BFO_0000020 . obo:NCBITaxon_131221 a rdfs:Class ; rdfs:label "Streptophytina" ; rdfs:subClassOf obo:NCBITaxon_35493 . obo:NCBITaxon_9347 a rdfs:Class ; rdfs:label "Eutheria" ; rdfs:subClassOf obo:NCBITaxon_32525 . obo:PCO_0000079 a rdfs:Class ; rdfs:label "plant density of a population"@en ; rdfs:comment "The density of plants in a population or organisms (a single species), often measured as the number of plants per area." ; rdfs:subClassOf obo:PCO_0000003 , obo:PCO_0000077 . obo:PCO_1000003 a rdfs:Class ; rdfs:label "human migratory population"@en ; rdfs:comment "A migratory population of humans, travelling with the intention of settling in a new area." ; rdfs:subClassOf obo:PCO_0000027 . obo:IAO_8000019 a rdfs:Class ; rdfs:label "ontology module subsetted by OWL profile"@en ; rdfs:subClassOf obo:IAO_8000017 . obo:CARO_0001010 a rdfs:Class ; rdfs:label "organism or virus or viroid" ; rdfs:comment "Material anatomical entity that is a member of an individual species or is a viral or viroid particle." ; rdfs:subClassOf obo:PCO_0000031 . obo:ENVO_01001369 a rdfs:Class ; rdfs:label "tidal mangrove shrubland"@en ; rdfs:comment "A shrubland biome which is densely vegetated by dwarf or short mangroves (and associates) that are generally less than 6 meters in height, is tidally influenced, is located in tropical or subtropical areas." ; rdfs:subClassOf obo:BFO_0000040 . obo:PCO_0000015 a rdfs:Class ; rdfs:label "obsolete prey role"@en ; rdfs:subClassOf . obo:PATO_0002304 a rdfs:Class ; rdfs:label "increased process quality" ; rdfs:comment "A quality of a process that has a value that is increased compared to normal or average." ; rdfs:subClassOf obo:PATO_0001236 , obo:PATO_0002300 . obo:PCO_0000026 a rdfs:Class ; rdfs:label "obsolete red organism"@en ; rdfs:comment "An example class added to demonstrate the design pattern for collections of organism. Red organism should be automatically classified as a member of red population when the reasoner is synchronized using a DL query." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "obsolete organismal entity"@en ; rdfs:comment "A material entity that is one or more organisms, viruses or viroids." ; rdfs:subClassOf . obo:BFO_0000003 a rdfs:Class ; rdfs:label "occurrent"@en ; rdfs:comment "An entity that has temporal parts and that happens, unfolds or develops through time."@en ; rdfs:subClassOf obo:BFO_0000001 . obo:NCBITaxon_33213 a rdfs:Class ; rdfs:label "Bilateria" ; rdfs:subClassOf obo:NCBITaxon_6072 . obo:IAO_8000015 a rdfs:Class ; rdfs:label "template generated ontology module"@en ; rdfs:comment "An ontology module that is automatically generated from a template specification and fillers for slots in that template."@en ; rdfs:seeAlso , , ; rdfs:subClassOf obo:IAO_8000014 . obo:PCO_0000011 a rdfs:Class ; rdfs:label "population growth" ; rdfs:comment "A process that leads to a change in the number of individuals (positive or negative) in a population." ; rdfs:subClassOf obo:PCO_0000005 . obo:PCO_0000051 a rdfs:Class ; rdfs:label "multi-species collection of microbes"@en ; rdfs:comment "A multi-species collection of organisms that consists of two or more microbes from at least two species."@en ; rdfs:subClassOf obo:PCO_0000029 . obo:PCO_0001001 a rdfs:Class ; rdfs:label "pair of interacting organisms of the same species"@en ; rdfs:comment "A pair of interacting organisms that consists of exactly two organism, viruses, or viroids of the same species that are interacting with each other." ; rdfs:subClassOf obo:PCO_0000018 , obo:PCO_0001000 . obo:PCO_0000000 a rdfs:Class ; rdfs:label "collection of organisms"@en ; rdfs:comment "A material entity that consists of two or more organisms, viruses, or viroids."@en ; rdfs:subClassOf obo:BFO_0000027 , obo:PCO_0000031 . a rdfs:Class ; rdfs:label "obsolete tidal mangrove shrubland community"@en ; rdfs:comment "An ecological community which is composed primarily of dwarf or short mangroves, often populations of Laguncularia racemosa, Avicennia germinans, Sarcocornia pacifica, or Batis maritima."@en ; rdfs:subClassOf . obo:PCO_0000062 a rdfs:Class ; rdfs:label "Shannon diversity index"@en ; rdfs:comment "A community species diversity metric that accounts for both the abundance and evenness of the species present quantified via the following formula: the negative sum of, the product of the proportion of species i relative to the total number of species (pi) multiplied by the natural logarithm of this proportion (ln pi)." ; rdfs:subClassOf obo:PCO_0000019 . obo:PCO_0000022 a rdfs:Class ; rdfs:label "species extinction"@en ; rdfs:comment "A process that ultimately leads to the death of all individuals in a population."@en ; rdfs:subClassOf obo:BFO_0000015 . obo:NCBITaxon_314293 a rdfs:Class ; rdfs:label "Simiiformes" ; rdfs:subClassOf obo:NCBITaxon_376913 . obo:PCO_0000029 a rdfs:Class ; rdfs:label "multi-species collection of organisms"@en ; rdfs:comment "A collection of organisms that consists of two or more organisms from at least two species."@en ; rdfs:subClassOf obo:PCO_0000000 . obo:NCBITaxon_9604 a rdfs:Class ; rdfs:label "Hominidae" ; rdfs:subClassOf obo:NCBITaxon_314295 . obo:BFO_0000031 a rdfs:Class ; rdfs:label "generically dependent continuant"@en ; rdfs:comment "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en ; rdfs:subClassOf obo:BFO_0000002 . obo:IAO_8000020 a rdfs:Class ; rdfs:label "EL++ ontology module"@en ; rdfs:subClassOf obo:IAO_8000019 . obo:PATO_0002062 a rdfs:Class ; rdfs:label "physical quality of a process" ; rdfs:subClassOf obo:PATO_0001236 . a rdfs:Class ; rdfs:comment "An unconstrained type or object" . obo:PCO_0000007 a rdfs:Class ; rdfs:label "population death rate"@en ; rdfs:comment "The rate of death of a population of organsisms." ; rdfs:subClassOf obo:PATO_0000161 . obo:NCBITaxon_78536 a rdfs:Class ; rdfs:label "Euphyllophyta" ; rdfs:subClassOf obo:NCBITaxon_58023 . obo:PATO_0001555 a rdfs:Class ; rdfs:label "has number of" ; rdfs:comment "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." ; rdfs:subClassOf obo:PATO_0001241 . obo:IAO_8000008 a rdfs:Class ; rdfs:label "analysis subset ontology module"@en ; rdfs:comment "An ontology module that is intended for usage in analysis or discovery applications."@en ; rdfs:subClassOf obo:IAO_8000006 . obo:PCO_1000002 a rdfs:Class ; rdfs:label "human population migration"@en ; rdfs:comment "A population migration during which a population of humans moves from one area to another with the intention of settling permanently in the new location." ; rdfs:subClassOf obo:PCO_1000001 . obo:NCBITaxon_40674 a rdfs:Class ; rdfs:label "Mammalia" ; rdfs:subClassOf obo:NCBITaxon_32524 . obo:NCBITaxon_10239 a rdfs:Class ; rdfs:label "Viruses" . obo:NCBITaxon_2 a rdfs:Class ; rdfs:label "Bacteria" ; rdfs:subClassOf obo:NCBITaxon_131567 . obo:ENVO_01000744 a rdfs:Class ; rdfs:label "human dwelling"@en ; rdfs:comment "A self-contained constructed feature used by one or more households as a home, such as a house, apartment, mobile home, houseboat or other 'substantial' structure. A dwelling typically includes nearby outbuildings, sheds etc. within the curtilage of the property, excluding any 'open fields beyond'. It has significance in relation to search and seizure, conveyancing of real property, burglary, trespass, and land use planning." ; rdfs:subClassOf obo:BFO_0000040 . obo:PCO_0000081 a rdfs:Class ; rdfs:label "seedling density of a population"@en ; rdfs:comment "The density of seedlings in a population or organisms (a single species), often measured as the number of seedlings per area." ; rdfs:subClassOf obo:PCO_0000003 , obo:PCO_0000078 . obo:IAO_0000027 a rdfs:Class ; rdfs:label "data item"@en ; rdfs:comment "a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en ; rdfs:subClassOf obo:IAO_0000030 . obo:NCBITaxon_32524 a rdfs:Class ; rdfs:label "Amniota" ; rdfs:subClassOf obo:NCBITaxon_32523 . obo:PCO_0000018 a rdfs:Class ; rdfs:label "single-species collection of organisms"@en ; rdfs:comment "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species."@en ; rdfs:subClassOf obo:PCO_0000000 . obo:BFO_0000051 a rdf:Property ; rdfs:label "has part"@en ; rdfs:comment "a core relation that holds between a whole and its part"@en ; rdfs:range . obo:BFO_0000067 a rdf:Property ; rdfs:label "contains process"@en ; rdfs:comment "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en ; rdfs:range . obo:BFO_0000179 a rdf:Property ; rdfs:range xsd:string . obo:BFO_0000180 a rdf:Property ; rdfs:range xsd:string . obo:IAO_0000111 a rdf:Property ; rdfs:label "editor preferred label" ; rdfs:comment "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)"@en ; rdfs:range xsd:string . obo:IAO_0000112 a rdf:Property ; rdfs:label "example of usage"@en ; rdfs:comment "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en ; rdfs:range xsd:string . obo:IAO_0000113 a rdf:Property ; rdfs:label "in branch"@en ; rdfs:comment "An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet."@en ; rdfs:range xsd:string . obo:IAO_0000114 a rdf:Property ; rdfs:label "has curation status" ; rdfs:range xsd:string . obo:IAO_0000115 a rdf:Property ; rdfs:label "textual definition" ; rdfs:comment "The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en ; rdfs:range xsd:string . obo:IAO_0000116 a rdf:Property ; rdfs:label "editor note" ; rdfs:comment "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en ; rdfs:range xsd:string . obo:IAO_0000117 a rdf:Property ; rdfs:label "term editor" ; rdfs:comment "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en ; rdfs:range xsd:string . obo:IAO_0000118 a rdf:Property ; rdfs:label "alternative term"@en ; rdfs:comment "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)"@en ; rdfs:range xsd:string . obo:IAO_0000119 a rdf:Property ; rdfs:label "definition source" ; rdfs:comment "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en ; rdfs:range xsd:string . obo:IAO_0000231 a rdf:Property ; rdfs:label "has obsolescence reason"@en ; rdfs:comment "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification."@en ; rdfs:range xsd:string . obo:IAO_0000232 a rdf:Property ; rdfs:label "curator note"@en ; rdfs:comment "An administrative note of use for a curator but of no use for a user"@en ; rdfs:range xsd:string . obo:IAO_0000233 a rdf:Property ; rdfs:label "term tracker item"@en ; rdfs:comment "An IRI or similar locator for a request or discussion of an ontology term."@en ; rdfs:range xsd:string . obo:IAO_0000234 a rdf:Property ; rdfs:label "ontology term requester"@en ; rdfs:comment "The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition."@en ; rdfs:range xsd:string . obo:IAO_0000411 a rdf:Property ; rdfs:label "is denotator type"@en ; rdfs:comment "Relates an class defined in an ontology, to the type of it's denotator"@en ; rdfs:range xsd:string . obo:IAO_0000412 a rdf:Property ; rdfs:label "imported from"@en ; rdfs:comment "For external terms/classes, the ontology from which the term was imported"@en ; rdfs:range xsd:string . obo:IAO_0000424 a rdf:Property ; rdfs:label "expand expression to"@en ; rdfs:comment "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones"@en ; rdfs:range xsd:string . obo:IAO_0000425 a rdf:Property ; rdfs:label "expand assertion to"@en ; rdfs:comment "A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom."@en ; rdfs:range xsd:string . obo:IAO_0000426 a rdf:Property ; rdfs:label "first order logic expression"@en ; rdfs:range xsd:string . obo:IAO_0000427 a rdf:Property ; rdfs:label "antisymmetric property"@en ; rdfs:comment "Use boolean value xsd:true to indicate that the property is an antisymmetric property"@en ; rdfs:range xsd:string . obo:IAO_0000589 a rdf:Property ; rdfs:label "OBO foundry unique label"@en ; rdfs:comment "An alternative name for a class or property which is unique across the OBO Foundry."@en ; rdfs:range xsd:string . obo:IAO_0000596 a rdf:Property ; rdfs:label "has ID digit count"@en ; rdfs:comment "Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix\" annotation property value concatenated with an integer in the id range (left padded with \"0\"s to make this many digits)"@en ; rdfs:range xsd:string . obo:IAO_0000597 a rdf:Property ; rdfs:label "has ID range allocated to"@en ; rdfs:comment "Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms"@en ; rdfs:range xsd:string . obo:IAO_0000598 a rdf:Property ; rdfs:label "has ID policy for"@en ; rdfs:comment "Relating an ontology used to record id policy to the ontology namespace whose policy it manages"@en ; rdfs:range xsd:string . obo:IAO_0000599 a rdf:Property ; rdfs:label "has ID prefix"@en ; rdfs:comment "Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with \"0\"s to make this many digits) to construct an ID for a term being created."@en ; rdfs:range xsd:string . obo:IAO_0000600 a rdf:Property ; rdfs:label "elucidation"@en ; rdfs:range xsd:string . obo:IAO_0000601 a rdf:Property ; rdfs:label "has associated axiom(nl)"@en ; rdfs:range xsd:string . obo:IAO_0000602 a rdf:Property ; rdfs:label "has associated axiom(fol)"@en ; rdfs:range xsd:string . obo:IAO_0000603 a rdf:Property ; rdfs:label "is allocated id range"@en ; rdfs:comment "Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. \"IAO_0020000-IAO_0020999\""@en ; rdfs:range xsd:string . obo:IAO_0000700 a rdf:Property ; rdfs:label "has ontology root term"@en ; rdfs:comment "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en ; rdfs:range xsd:string . obo:IAO_0006011 a rdf:Property ; rdfs:label "may be identical to"@en ; rdfs:comment "A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged."@en ; rdfs:range xsd:string . obo:IAO_0006012 a rdf:Property ; rdfs:label "scheduled for obsoletion on or after"@en ; rdfs:comment "Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date."@en ; rdfs:range xsd:dateTime . obo:IAO_0010000 a rdf:Property ; rdfs:label "has axiom label"@en ; rdfs:range xsd:string . obo:IAO_0100001 a rdf:Property ; rdfs:label "term replaced by"@en ; rdfs:comment "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en ; rdfs:range xsd:string . obo:PCO_0000055 a rdf:Property ; rdfs:label "obsolete has member of"@en ; rdfs:range . obo:RO_0000053 a rdf:Property ; rdfs:label "bearer of"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en ; rdfs:range obo:BFO_0000020 . obo:RO_0000080 a rdf:Property ; rdfs:label "quality of"@en ; rdfs:comment "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0000052 . obo:RO_0000081 a rdf:Property ; rdfs:label "role of"@en ; rdfs:comment "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0000052 . obo:RO_0000086 a rdf:Property ; rdfs:label "has quality"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en ; rdfs:range obo:BFO_0000019 ; rdfs:subPropertyOf obo:RO_0000053 . obo:RO_0000092 a rdf:Property ; rdfs:label "disposition of"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0000052 . obo:RO_0001000 a rdf:Property ; rdfs:label "derives from"@en ; rdfs:comment "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ; rdfs:range . obo:RO_0001001 a rdf:Property ; rdfs:label "derives into"@en ; rdfs:comment "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ; rdfs:range . obo:RO_0001015 a rdf:Property ; rdfs:label "location of"@en ; rdfs:comment "a relation between two independent continuants, the location and the target, in which the target is entirely within the location"@en ; rdfs:range . obo:RO_0001900 a rdf:Property ; rdfs:range xsd:string . obo:RO_0002000 a rdf:Property ; rdfs:label "2D boundary of"@en ; rdfs:comment "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity"@en ; rdfs:range . obo:RO_0002022 a rdf:Property ; rdfs:label "directly regulated by" ; rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002334 . obo:RO_0002023 a rdf:Property ; rdfs:label "directly negatively regulated by" ; rdfs:comment "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002022 . obo:RO_0002024 a rdf:Property ; rdfs:label "directly positively regulated by" ; rdfs:comment "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002022 . obo:RO_0002086 a rdf:Property ; rdfs:label "ends after"@en ; rdfs:comment "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002222 . obo:RO_0002087 a rdf:Property ; rdfs:label "immediately preceded by"@en ; rdfs:comment "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:BFO_0000062 . obo:RO_0002090 a rdf:Property ; rdfs:label "immediately precedes"@en ; rdfs:comment "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:BFO_0000063 . obo:RO_0002131 a rdf:Property ; rdfs:label "overlaps"@en ; rdfs:comment "x overlaps y if and only if there exists some z such that x has part z and z part of y" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002323 . obo:RO_0002161 a rdf:Property ; rdfs:range xsd:string . obo:RO_0002212 a rdf:Property ; rdfs:label "negatively regulates"@en ; rdfs:comment "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002305 , obo:RO_0002211 . obo:RO_0002213 a rdf:Property ; rdfs:label "positively regulates"@en ; rdfs:comment "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002304 , obo:RO_0002211 . obo:RO_0002216 a rdf:Property ; rdfs:label "capable of part of"@en ; rdfs:comment "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002500 , obo:RO_0002328 . obo:RO_0002263 a rdf:Property ; rdfs:label "acts upstream of" ; rdfs:comment "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002264 . obo:RO_0002264 a rdf:Property ; rdfs:label "acts upstream of or within" ; rdfs:comment "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002500 . obo:RO_0002304 a rdf:Property ; rdfs:label "causally upstream of, positive effect" ; rdfs:comment "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0004047 , obo:RO_0002411 . obo:RO_0002305 a rdf:Property ; rdfs:label "causally upstream of, negative effect" ; rdfs:comment "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0004046 , obo:RO_0002411 . obo:RO_0002323 a rdf:Property ; rdfs:label "mereotopologically related to"@en ; rdfs:comment "A mereological relationship or a topological relationship" ; rdfs:range . obo:RO_0002327 a rdf:Property ; rdfs:label "enables"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002215 . obo:RO_0002328 a rdf:Property ; rdfs:label "functionally related to"@en ; rdfs:comment "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." ; rdfs:range . obo:RO_0002329 a rdf:Property ; rdfs:label "part of structure that is capable of"@en ; rdfs:comment "this relation holds between c and p when c is part of some c', and c' is capable of p." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002328 . obo:RO_0002331 a rdf:Property ; rdfs:label "involved in"@en ; rdfs:comment "c involved_in p if and only if c enables some process p', and p' is part of p" ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002431 , obo:RO_0000056 . obo:RO_0002333 a rdf:Property ; rdfs:label "enabled by"@en ; rdfs:comment "inverse of enables" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0000057 . obo:RO_0002335 a rdf:Property ; rdfs:label "negatively regulated by"@en ; rdfs:comment "inverse of negatively regulates" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002334 . obo:RO_0002336 a rdf:Property ; rdfs:label "positively regulated by"@en ; rdfs:comment "inverse of positively regulates" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002334 . obo:RO_0002350 a rdf:Property ; rdfs:label "member of"@en ; rdfs:comment "is member of is a mereological relation between a item and a collection." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:BFO_0000050 . obo:RO_0002352 a rdf:Property ; rdfs:label "input of"@en ; rdfs:comment "inverse of has input" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0000056 . obo:RO_0002404 a rdf:Property ; rdfs:label "causally downstream of"@en ; rdfs:comment "inverse of upstream of" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002427 , obo:BFO_0000062 . obo:RO_0002405 a rdf:Property ; rdfs:label "immediately causally downstream of"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002404 , obo:RO_0002087 . obo:RO_0002410 a rdf:Property ; rdfs:label "causally related to"@en ; rdfs:comment "This relation groups causal relations between material entities and causal relations between processes" ; rdfs:range . obo:RO_0002411 a rdf:Property ; rdfs:label "causally upstream of"@en ; rdfs:comment "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002418 , obo:BFO_0000063 . obo:RO_0002412 a rdf:Property ; rdfs:label "immediately causally upstream of"@en ; rdfs:comment "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002411 , obo:RO_0002090 . obo:RO_0002418 a rdf:Property ; rdfs:label "causally upstream of or within" ; rdfs:comment "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002501 . obo:RO_0002427 a rdf:Property ; rdfs:label "causally downstream of or within" ; rdfs:comment "inverse of causally upstream of or within" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002501 . obo:RO_0002428 a rdf:Property ; rdfs:label "involved in regulation of" ; rdfs:comment "c involved in regulation of p if c is involved in some p' and p' regulates some p" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002431 , obo:RO_0002263 . obo:RO_0002429 a rdf:Property ; rdfs:label "involved in positive regulation of" ; rdfs:comment "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002428 . obo:RO_0002430 a rdf:Property ; rdfs:label "involved in negative regulation of" ; rdfs:comment "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002428 . obo:RO_0002431 a rdf:Property ; rdfs:label "involved in or involved in regulation of" ; rdfs:comment "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0002500 , obo:RO_0002264 . obo:RO_0002432 a rdf:Property ; rdfs:label "is active in" ; rdfs:comment "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0002131 . obo:RO_0002436 a rdf:Property ; rdfs:label "molecularly interacts with" ; rdfs:comment "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." ; rdfs:seeAlso obo:ECO_0000353 , obo:MI_0915 ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002434 . obo:RO_0002447 a rdf:Property ; rdfs:label "phosphorylates" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002436 . obo:RO_0002464 a rdf:Property ; rdfs:label "helper property (not for use in curation)" ; rdfs:range . obo:RO_0002481 a rdf:Property ; rdfs:label "is kinase activity" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002564 . obo:RO_0002500 a rdf:Property ; rdfs:label "causal agent in process" ; rdfs:comment "A relationship between a material entity and a process where the material entity has some causal role that influences the process" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002595 . obo:RO_0002559 a rdf:Property ; rdfs:label "causally influenced by" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002506 . obo:RO_0002563 a rdf:Property ; rdfs:label "interaction relation helper property" ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002464 . obo:RO_0002564 a rdf:Property ; rdfs:label "molecular interaction relation helper property" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002563 . obo:RO_0002575 a rdf:Property ; rdfs:range xsd:string . obo:RO_0002578 a rdf:Property ; rdfs:label "directly regulates" ; rdfs:comment "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002412 , obo:RO_0002211 . obo:RO_0002581 a rdf:Property ; rdfs:label "is a defining property chain axiom" ; rdfs:comment "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL" ; rdfs:range xsd:string . obo:RO_0002582 a rdf:Property ; rdfs:label "is a defining property chain axiom where second argument is reflexive" ; rdfs:comment "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R." ; rdfs:range xsd:string . obo:RO_0002584 a rdf:Property ; rdfs:label "has part structure that is capable of" ; rdfs:comment "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002595 , obo:RO_0002328 . obo:RO_0002596 a rdf:Property ; rdfs:label "capable of regulating" ; rdfs:comment "Holds between c and p if and only if c is capable of some activity a, and a regulates p." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002500 . obo:RO_0002597 a rdf:Property ; rdfs:label "capable of negatively regulating" ; rdfs:comment "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002596 . obo:RO_0002598 a rdf:Property ; rdfs:label "capable of positively regulating" ; rdfs:comment "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002596 . obo:RO_0002604 a rdf:Property ; rdfs:range xsd:string . obo:RO_0002608 a rdf:Property ; rdfs:label "process has causal agent" ; rdfs:comment "Inverse of 'causal agent in process'" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002410 . obo:RO_0002629 a rdf:Property ; rdfs:label "directly positively regulates" ; rdfs:comment "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002578 , obo:RO_0002213 . obo:RO_0002630 a rdf:Property ; rdfs:label "directly negatively regulates" ; rdfs:comment "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002578 , obo:RO_0002212 . obo:RO_0004031 a rdf:Property ; rdfs:label "enables subfunction" ; rdfs:comment "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002328 . obo:RO_0004032 a rdf:Property ; rdfs:label "acts upstream of or within, positive effect" ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002264 . obo:RO_0004033 a rdf:Property ; rdfs:label "acts upstream of or within, negative effect" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002264 . obo:RO_0004034 a rdf:Property ; rdfs:label "acts upstream of, positive effect" ; rdfs:comment "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0004032 , obo:RO_0002263 . obo:RO_0004035 a rdf:Property ; rdfs:label "acts upstream of, negative effect" ; rdfs:comment "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0004033 , obo:RO_0002263 . obo:RO_0004046 a rdf:Property ; rdfs:label "causally upstream of or within, negative effect" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002418 . obo:RO_0004047 a rdf:Property ; rdfs:label "causally upstream of or within, positive effect" ; rdfs:range xsd:string ; rdfs:subPropertyOf obo:RO_0002418 . obo:RO_0004049 a rdf:Property ; rdfs:range xsd:string . obo:RO_0004050 a rdf:Property ; rdfs:range xsd:string . obo:RO_0040042 a rdf:Property ; rdfs:range xsd:string . obo:STATO_0000032 a rdf:Property ; rdfs:label "STATO alternative term"@en ; rdfs:comment "an alternative term used for STATO statistical ontology and ISA team"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:range xsd:string . a rdf:Property ; rdfs:range xsd:string . a rdf:Property ; rdfs:range xsd:string . obo:IAO_0000078 a rdfs:Class ; rdfs:label "curation status specification"@en ; rdfs:comment "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ; rdfs:subClassOf obo:IAO_0000102 . obo:IAO_0000002 a obo:IAO_0000078 ; rdfs:label "example to be eventually removed"@en . obo:IAO_0000120 a obo:IAO_0000078 ; rdfs:label "metadata complete"@en ; rdfs:comment "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en . obo:IAO_0000121 a obo:IAO_0000078 ; rdfs:label "organizational term"@en ; rdfs:comment "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en . obo:IAO_0000122 a obo:IAO_0000078 ; rdfs:label "ready for release"@en ; rdfs:comment "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en . obo:IAO_0000123 a obo:IAO_0000078 ; rdfs:label "metadata incomplete"@en ; rdfs:comment "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en . obo:IAO_0000124 a obo:IAO_0000078 ; rdfs:label "uncurated"@en ; rdfs:comment "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en . obo:IAO_0000125 a obo:IAO_0000078 ; rdfs:label "pending final vetting"@en ; rdfs:comment "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en . obo:IAO_0000423 a obo:IAO_0000078 ; rdfs:label "to be replaced with external ontology term"@en ; rdfs:comment "Terms with this status should eventually replaced with a term from another ontology."@en . obo:IAO_0000428 a obo:IAO_0000078 ; rdfs:label "requires discussion"@en ; rdfs:comment "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en . obo:IAO_0000225 a rdfs:Class ; rdfs:label "obsolescence reason specification"@en ; rdfs:comment "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ; rdfs:subClassOf obo:IAO_0000102 . obo:IAO_0000103 a obo:IAO_0000225 ; rdfs:label "failed exploratory term"@en ; rdfs:comment "The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job"@en . obo:IAO_0000226 a obo:IAO_0000225 ; rdfs:label "placeholder removed"@en . obo:IAO_0000227 a obo:IAO_0000225 ; rdfs:label "terms merged"@en . obo:IAO_0000228 a obo:IAO_0000225 ; rdfs:label "term imported"@en . obo:IAO_0000229 a obo:IAO_0000225 ; rdfs:label "term split"@en . obo:IAO_0000409 a rdfs:Class ; rdfs:label "denotator type"@en ; rdfs:comment "A denotator type indicates how a term should be interpreted from an ontological perspective."@en ; rdfs:subClassOf obo:IAO_0000102 . obo:IAO_0000410 a obo:IAO_0000409 ; rdfs:label "universal"@en . obo:IAO_0000420 a obo:IAO_0000409 ; rdfs:label "defined class"@en ; rdfs:comment "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal"@en . obo:IAO_0000421 a obo:IAO_0000409 ; rdfs:label "named class expression"@en ; rdfs:comment "A named class expression is a logical expression that is given a name. The name can be used in place of the expression."@en .