@prefix rdf: . @prefix owl: . @prefix rdfs: . @prefix xml: . @prefix xsd: . a owl:Ontology; owl:versionIRI ; "Crawford Revie", "Eva Blomqvist", "Karl Hammar", "Matthias Filter", "Patrick Lambrix", "Taras Günther"; ; "Fernanda Dórea"; "An ontology to support semantic interoperability among domains involved in health surveillance (animal health, public health and food safety). More details at http://datadrivensurveillance.org."@en; "Health Surveillance Ontology (HSO)"@en; rdfs:comment "This is an ontology to support (one) health surveillance, focused on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc."@en; ; . a owl:AnnotationProperty; "Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification."@en; "Really of interest to developers only"@en; rdfs:label "BFO OWL specification label"@en; rdfs:subPropertyOf rdfs:label . a owl:AnnotationProperty; "Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2"@en; "Person:Alan Ruttenberg"; "Really of interest to developers only"@en; rdfs:label "BFO CLIF specification label"@en; rdfs:subPropertyOf rdfs:label . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty; """From the European Food Safety Agency (EFSA): https://zenodo.org/record/344473#.WzvvyvkzYkV The Data Collection Framework (DCF) application is constituted of an interactive web-based application that aims at facilitating data exchange, data extraction and data reusability. A harmonized terminology is used to collect and analyse data in a coherent way with the aim to support scientific research. DCF_catalogues file contains all the valid catalogues published in the DCF. The SSD2 file contains the controlled terminologies based on the standard description of samples and analytical results (Standard Sample Description Extension), extended to cover additional data collection domains, such as zoonotic agents in food and animals, antimicrobial resistance and food additives. This annotation points to the specific catalague, within SSD2, form which terms were imported."""@en; rdfs:label "SSD_catalogue"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This annotation gives the specific code for the concept include din the ontology. Look for this code in the specific catalogue via the annotation property \"\"SSD_catalogue\"\". Full names are stored in the property \"\"SSD_termExtendedName\"\".\""""@en; rdfs:label "SSD_termCode"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This annotation gives the specific term name for the concept include din the ontology. Look for this name in the specific catalogue via the annotation property \"SSD_catalogue\". Codes are stored in the property \"SSD_termCode\"."@en; rdfs:label "SSD_termExtendedName"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This annotation gives any additional notes. Look for this name in the specific catalogue via the annotation property \"SSD_catalogue\". Codes are stored in the property \"SSD_termCode\"."@en; rdfs:label "SSD_termScopeNote"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "A collection of annotations which refer to all the annotation steps in the One Health Consensus Reporting Annotation Checklist (OH-CRAC). OH-CRAC is part of the One Health Codex - https://oh-surveillance-codex.readthedocs.io/en/latest/5-the-reporting-principle.html."@en; rdfs:label "One-Health Consensus Reference Annotation Checklist (OH-CRAC)"@en; rdfs:domain . a owl:AnnotationProperty; "This section provides information on what \"caused\" the surveillance activity and what is expected from the surveillance activity. It may be triggered by a new law or feedback from previous surveillance activities. It might even be initiated by practices in other (national and international) organisations."@en; rdfs:label "CRAC 1.1 Motivation / cause"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section documents the results of consultation activities between the surveillance \"actor\" with its customers / stakeholders to identify/confirm the needs of the surveillance activity. Specifically, it documents what is agreed to be delivered by this surveillance activity, when, how and why. It also documents whether previously identified needs have changed."@en; rdfs:label "CRAC 1.2. Requirement analysis"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section documents what surveillance objectives (e.g. prevalence estimation, case detection, early detection, disease freedom) and their quality criteria are defined to meet the needs of the end-users / stakeholders. It also describes existing legal or practical constraints, e.g. confidentiality, resources etc."@en; rdfs:label "CRAC 1.3. Surveillance objective and constraints"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section gives an overview on all designed outputs, products and services related to the surveillance activity. This includes the output of the surveillance activity, but also related work, as e.g. preparation of systems and tools for dissemination, disclosure control methods etc."@en; rdfs:label "CRAC 2.1. Framework design"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes which variables / measurements were planned to be collected / taken and which metadata set / standard were used. It further specifies if measured values were planned to be grouped or classified, how this was planned to be done. It also specifies if new variables derive from the original ones (see section 4.5, New variable/unit derivation). It may overlap with the description requested for section 2.3 (Surveillance methods/strategy)"@en; rdfs:label "CRAC 2.2. Variable specifications"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes the developed \"collection strategy\" (collection strategy in this context means, e.g. active or passive surveillance). It also describes the collection instruments (survey, data extraction methods etc.) and collection units (e.g. individuals, herds, food batch etc.). It may overlap with the surveillance variables specification described in section 2.2 (Variable specifications)"@en; rdfs:label "CRAC 2.3. Surveillance methods/strategy"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; rdfs:label "CRAC 2.4. Sampling plan"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This sub-section specifies the population(s) that were sampled. \""""@en; rdfs:label "CRAC 2.4.1. Sampled population"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This sub-section describes the design process followed for the sampling plan generation and the sampling criteria."@en; rdfs:label "CRAC 2.4.2. Sampling schema"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This sub-section describes the sample collection approach carried out including information on the practical handling, storage and labeling of taken samples by different actors (e.g. storage temperature, labeling with unique IDs)."@en; rdfs:label "CRAC 2.4.3. Sample collection"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This sub-section details the processing of the samples prior to the analytical processing."@en; rdfs:label "CRAC 2.4.4. Sample preparation"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This sub-section reports on the analytical procedures applied to the different sets of samples."@en; rdfs:label "CRAC 2.4.5. Analytical procedures"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes the methods used for the data processing including analysis of bioinformatics, trends, modelling, statistical tests, etc. This section also includes design of specifications for data integration from multiple data sources, validation of data and estimation."@en; rdfs:label "CRAC 2.5. Data processing/analysis"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes how the specific sampling units were chosen based on the sampling plan that is described in section 2.4 (Sampling plan). In contrast to the information given in 2.4, this section should describe how the real \"implementation\" of the sampling plan took place, as sometimes the \"field work\" is done by other actors than the planning."@en; rdfs:label "CRAC 3.1. Practical aspects on sample selection"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This section describes the activies undertaken to ensure that the people, processes and technology (e.g. web-based applications, GPS system) were ready to collect data and metadata. It includes the strategy, planning and training activities in preparation for the specific sampling activity. This description might include information on: - Preparing a sample storage and / or shipment strategy; - Training staff how to collect samples, e.g. physician; - Training staff how to analyze selected samples in the lab, e.g. perform ring trials - Provisioning of collection resources (e.g. laptops, collection apps, central data or sample repositories, questionnaires, information leaflets or letters, required lab material); - Agreements with intermediate collection bodies, (e.g. sub-contractors); - How security and confidentiality of data to be collected and data transmission was guaranteed\""""@en; rdfs:label "CRAC 3.2. Practical support activities"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes how the execution / implementation of the sample collection worked out, e.g. if there were corrective actions taken along the sampling period. This should include reports on quality control activities carried out by labs and actors involved in sample collection."@en; rdfs:label "CRAC 3.3. Practical aspects on field and lab work"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This section describes how the collected lab data and metadata were loaded into a suitable electronic environment for further processing. It may include a description of manual or automatic data capture processes that were applied to extract e.g. metadata from paper questionnaires, or converting the formats of files or encoding the variables received. It may also include analysis of the metadata and paradata associated with collection to ensure the collection activities have met requirements. It might also describe how physical samples or related material (questionnaires) will be archived. When software is used for data collection the version and software archiving should be described.\""""@en; rdfs:label "CRAC 3.4. Practical aspects on information handling"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This section describes any activity related to data integration or data fusion. The data collection could be a combination of new and historical data, from external or internal sources, from a variety of collection instruments etc. For example the data collection could be enriched by information from official (governmental) or non-official sources. It could further include a description on: - Data pooling, with the aim of increasing the effective number of observations of some phenomena; - Mapping or record linkage routines, with the aim of linking different data sources that use different encoding schemas; - Prioritising, when two or more sources contain data for the same variable, with potentially different values. - Data anonymization, e.g. if identifiers such as name and address are stripped to help to protect confidentiality.\""""@en; rdfs:label "CRAC 4.1. Data integration"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This section describes if data/variables were classified and/or encoded. Examples: - Automatic coding routines that assign numeric codes to text responses according to a pre-determined statistical classification. - Classification based on analytical results (e.g. MLST pattern), bioinformatics analysis (e.g. phylogenetic trees) or mathematical models (PCA, SVM / ANN)\""""@en; rdfs:label "CRAC 4.2. Data classification / encoding"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes activities carried out to detect and localise actual or potential errors and discrepancies such as outliers, item non-response and miscoding (input data validation)."@en; rdfs:label "CRAC 4.3. Data validation"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This section describes what action was taken for incorrect, missing, unreliable or outdated data. For example new values may have been inserted or outdated data may have been removed. It should describe whether data were added or changed, the method used, and the flags used to mark them as changed. \""""@en; rdfs:label "CRAC 4.4. Data cleansing and correction"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes if new data were derived from variables/units that were not explicitly provided in the data collection but were needed to deliver the required outputs. Examples include deriving variables on households where the collection units are persons or deriving variables on enterprises where the collection units are legal units."@en; rdfs:label "CRAC 4.5. New variable/unit derivation"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes if weights for unit data records were created according to the methodology developed in sub-process 2.5 (Data processing/analysis). For example, weights might have been used to \"gross-up\" data to make them representative of the target population (e.g. for sample surveys or extracts from scanner data), or to adjust for non-response in total enumerations. In other situations, variables might have needed weighting for normalisation purpose or for benchmarking indicators (e.g. known population totals)."@en; rdfs:label "CRAC 4.6. Weighing of records"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes how aggregate data and population totals were generated from the data collection or lower-level aggregates. It includes summing data for records sharing certain characteristics (e.g. aggregation of data by demographic or geographic classifications), determining measures of average and dispersion, and applying weights from sub-process 4.6 (Weighting of records) to derive appropriate totals. In the case of statistical outputs, which use sample surveys, sampling errors corresponding to relevant aggregates may also be calculated in this section."@en; rdfs:label "CRAC 4.7. Data aggregation"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes how data from section 4.7 (Data aggregation) were transformed into surveillance statistics outputs such as indexes, seasonally adjusted statistics, e.g. trend, cycle, seasonal and irregular components, accessibility measures, etc., as well as the recording of quality characteristics such as coefficients of variation. The preparation of maps, GIS outputs and geo-statistical services can be included to maximise the value and capacity to analyse the statistical information."@en; rdfs:label "CRAC 5.1. Surveillance output generation"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; """\"This section describes how the quality of the generated surveillance statistical outputs were validated, in accordance with a general quality framework and with expectations. Validation activities can include: - Checking that the population coverage and response rates are as required; - Comparing the statistics with previous cycles (if applicable); - Checking that the associated metadata, paradata and quality indicators are present and in line with expectations; - Checking geospatial consistency of the data; - Confronting the statistics against other relevant data (both internal and external); - Investigating inconsistencies in the statistics; - Performing macro editing; - Validating the statistics against expectations and domain intelligence.\""""@en; rdfs:label "CRAC 5.2. Surveillance output validation"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes performed in-depth statistical analyses such as time-series analysis, consistency and comparability analysis, revision analysis (analysis of the differences between preliminary and revised estimates), analysis of asymmetries (discrepancies in mirror statistics) etc."@en; rdfs:label "CRAC 5.3. Surveillance output statistical analysis"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "This section describes activities carried out to ensure that the data (and metadata) to be disseminated do not breach the appropriate rules on confidentiality according to either organisation policies and rules, or to the process-specific methodology created in section 2.5 (Data processing/analysis plan). This may include checks for primary and secondary disclosure, as well as the application of data suppression or perturbation techniques and output checking. The degree and method of statistical disclosure control may vary for different types of outputs. For example, the approach used for microdata sets for research purposes will be different to that for published tables, finalised outputs of geospatial statistics or visualisations on maps."@en; rdfs:label "CRAC 5.4. Surveillance disclosure control"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "annotations created to map specific entities to their origin in the Standard Sample Description, a terminology catalogue maintained by the European Foos Safety Agency (EFSA). https://www.efsa.europa.eu/en/efsajournal/pub/3424"@en; rdfs:label "European Food Safety Agency Standard Sample Description Framework - EFSA SSD"@en . a owl:AnnotationProperty; rdfs:label "surveillance output"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; rdfs:label "discussion"@en; rdfs:subPropertyOf . a owl:AnnotationProperty; "Annotation property created to be a \"catch all\" property for information given about a surveillance activity, and not recognized as any specific entity in the ontology when using automated RDF conversion/import tools."@en; rdfs:label "additional information"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "editor preferred term"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "example of usage"@en . a owl:AnnotationProperty . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "definition"@en, "definition" . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "editor note"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "term editor"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "alternative term"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "definition source"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "curator note"@en . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "imported from"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "elucidation"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "has associated axiom(nl)"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "has associated axiom(fol)"@en . a owl:AnnotationProperty; rdfs:isDefinedBy ; rdfs:label "has axiom label"@en . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty; "A metadata relation between a class and its taxonomic rank (eg species, family)"; "ncbi_taxonomy"; rdfs:comment "This is an abstract class for use with the NCBI taxonomy to name the depth of the node within the tree. The link between the node term and the rank is only visible if you are using an obo 1.3 aware browser/editor; otherwise this can be ignored"; rdfs:label "has_rank" . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty; rdfs:label "has_alternative_id" . a owl:AnnotationProperty; rdfs:label "has broad synonym", "has_broad_synonym"; rdfs:subPropertyOf . a owl:AnnotationProperty; rdfs:label "database_cross_reference" . a owl:AnnotationProperty; rdfs:label "has exact synonym", "has_exact_synonym"; rdfs:subPropertyOf . a owl:AnnotationProperty; rdfs:label "has narrow synonym", "has_narrow_synonym"; rdfs:subPropertyOf . a owl:AnnotationProperty; rdfs:label "has_obo_namespace" . a owl:AnnotationProperty; rdfs:label "has_related_synonym" . a owl:AnnotationProperty . a owl:AnnotationProperty; rdfs:label "has synonym" . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . rdfs:isDefinedBy a owl:AnnotationProperty . rdfs:seeAlso a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . a owl:AnnotationProperty . xsd:date a rdfs:Datatype . a owl:ObjectProperty, owl:TransitiveProperty; owl:equivalentProperty _:252344; owl:inverseOf ; "is part of"@en; "my brain is part of my body (continuant parthood, two material entities)"@en, "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en, "this day is part of this year (occurrent parthood)"@en; "a core relation that holds between a part and its whole"@en; "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en, "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en, """Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."""@en; "part_of"@en; , ; ; "BFO:0000050"; "uberon"; "part_of"; "part_of"; rdfs:label "part of"@en, "part of"; rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of" . _:252344 owl:inverseOf . a owl:ObjectProperty, owl:TransitiveProperty; owl:equivalentProperty _:252354; "has part"@en; "my body has part my brain (continuant parthood, two material entities)"@en, "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en, "this year has part this day (occurrent parthood)"@en; "a core relation that holds between a whole and its part"@en; "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en, "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en, """Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."""@en; "has_part"@en; , ; ; "BFO:0000051"; "uberon"; "has_part"; "has_part"; rdfs:label "has part"@en, "has part" . _:252354 owl:inverseOf . a owl:ObjectProperty; owl:equivalentProperty _:252364; owl:inverseOf ; rdfs:domain ; rdfs:range ; "realized in"@en; "this disease is realized in this disease course"@en, "this fragility is realized in this shattering"@en, "this investigator role is realized in this investigation"@en; "is realized by"@en, "realized_in"@en; ; "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en; rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process"; rdfs:isDefinedBy ; rdfs:label "realized in"@en . _:252364 owl:inverseOf . a owl:ObjectProperty; owl:equivalentProperty _:252374; rdfs:domain ; rdfs:range ; "realizes"@en; "this disease course realizes this disease"@en, "this investigation realizes this investigator role"@en, "this shattering realizes this fragility"@en; ; "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en; rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process"; rdfs:isDefinedBy ; rdfs:label "realizes"@en . _:252374 owl:inverseOf . a owl:ObjectProperty, owl:TransitiveProperty; "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)"; ; "BFO:0000062"; "is preceded by", "takes place after"; "uberon"; "preceded_by"; "preceded_by"; rdfs:label "preceded_by" . a owl:ObjectProperty, owl:TransitiveProperty; ; "BFO:0000063"; "uberon"; "precedes"; "precedes"; rdfs:label "precedes" . a owl:ObjectProperty, owl:TransitiveProperty; "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer"; ; "cjm"; "2009-07-31T02:15:46Z"; "BSPO:0000096"; "uberon"; "anterior_to"; "anterior_to"; rdfs:label "anterior_to" . a owl:ObjectProperty; "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)."; ; "BSPO:0000097"; "uberon"; "distal_to"; "distal_to"; rdfs:label "distal_to" . a owl:ObjectProperty, owl:TransitiveProperty; owl:inverseOf ; "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)."; ; "BSPO:0000098"; "uberon"; "dorsal_to"; "dorsal_to"; rdfs:label "dorsal_to" . a owl:ObjectProperty, owl:TransitiveProperty; "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail."; ; "BSPO:0000099"; "caudal_to"; "uberon"; "posterior_to"; "posterior_to"; rdfs:label "posterior_to" . a owl:ObjectProperty, owl:TransitiveProperty; "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)."; ; "BSPO:0000102"; "uberon"; "ventral_to"; "ventral_to"; rdfs:label "ventral_to" . a owl:ObjectProperty, owl:TransitiveProperty; "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines."; ; "BSPO:0000107"; "uberon"; "deep_to"; "deep_to"; rdfs:label "deep_to" . a owl:ObjectProperty; "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer."; ; "BSPO:0000108"; "uberon"; "superficial_to"; "superficial_to"; rdfs:label "superficial_to" . a owl:ObjectProperty; rdfs:subPropertyOf ; "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion."; ; "BSPO:0000120"; "uberon"; "in_left_side_of"; "in_left_side_of"; rdfs:label "in_left_side_of"; rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI . a owl:ObjectProperty; rdfs:subPropertyOf ; "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion."; ; "BSPO:0000121"; "uberon"; "in_right_side_of"; "in_right_side_of"; rdfs:label "in_right_side_of"; rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI . a owl:ObjectProperty; rdfs:subPropertyOf ; "X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion."; ; "BSPO:0000123"; "uberon"; "in_anterior_side_of"; "in_anterior_side_of"; rdfs:label "in_anterior_side_of" . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:inverseOf ; "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion."; ; "BSPO:0000124"; "uberon"; "in_proximal_side_of"; "in_proximal_side_of"; rdfs:label "in_proximal_side_of" . a owl:ObjectProperty; rdfs:subPropertyOf ; "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion."; ; "BSPO:0000125"; "uberon"; "in_distal_side_of"; "in_distal_side_of"; rdfs:label "in_distal_side_of" . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:propertyDisjointWith ; "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure"; ; "BSPO:0000126"; "uberon"; "in_lateral_side_of"; "in_lateral_side_of"; rdfs:label "in_lateral_side_of"; rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI . a owl:ObjectProperty; rdfs:subPropertyOf ; "X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y"; ; "BSPO:0001106"; "uberon"; "proximalmost_part_of"; "proximalmost_part_of"; rdfs:label "proximalmost_part_of" . a owl:ObjectProperty; rdfs:subPropertyOf ; "X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y"; ; "BSPO:0001108"; "uberon"; "distalmost_part_of"; "distalmost_part_of"; rdfs:label "distalmost_part_of" . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "isSubSpeciesOf"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "isSerotypeOf"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "has datum"@en . a owl:ObjectProperty; rdfs:subPropertyOf owl:topObjectProperty; rdfs:domain _:2523c4; rdfs:range ; rdfs:label "has specimen datum"@en . _:2523c4 a owl:Class; owl:unionOf _:2523d4 . _:2523d4 rdf:first ; rdf:rest _:2523e4 . _:2523e4 rdf:first ; rdf:rest _:2523f4 . _:2523f4 rdf:first ; rdf:rest _:252404 . _:252404 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252414; rdfs:range ; owl:propertyChainAxiom _:252464, _:2524a4, _:2524d4; rdfs:label "has matrix type"@en . _:252414 a owl:Class; owl:unionOf _:252424 . _:252424 rdf:first ; rdf:rest _:252434 . _:252434 rdf:first ; rdf:rest _:252444 . _:252444 rdf:first ; rdf:rest _:252454 . _:252454 rdf:first ; rdf:rest rdf:nil . _:252464 rdf:first ; rdf:rest _:252474 . _:252474 rdf:first ; rdf:rest _:252484 . _:252484 rdf:first ; rdf:rest _:252494 . _:252494 rdf:first ; rdf:rest rdf:nil . _:2524a4 rdf:first ; rdf:rest _:2524b4 . _:2524b4 rdf:first ; rdf:rest _:2524c4 . _:2524c4 rdf:first ; rdf:rest rdf:nil . _:2524d4 rdf:first ; rdf:rest _:2524e4 . _:2524e4 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "sampled from"@en . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; owl:propertyChainAxiom _:2524f4, _:252534, _:252564; rdfs:label "sampled from anatomical entity"@en . _:2524f4 rdf:first ; rdf:rest _:252504 . _:252504 rdf:first ; rdf:rest _:252514 . _:252514 rdf:first ; rdf:rest _:252524 . _:252524 rdf:first ; rdf:rest rdf:nil . _:252534 rdf:first ; rdf:rest _:252544 . _:252544 rdf:first ; rdf:rest _:252554 . _:252554 rdf:first ; rdf:rest rdf:nil . _:252564 rdf:first ; rdf:rest _:252574 . _:252574 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; owl:propertyChainAxiom _:252584, _:2525f4, _:252644; rdfs:label "sampled from organism"@en . _:252584 rdf:first ; rdf:rest _:252594 . _:252594 rdf:first ; rdf:rest _:2525a4 . _:2525a4 rdf:first ; rdf:rest _:2525c4 . _:2525c4 rdf:first ; rdf:rest rdf:nil . _:2525f4 rdf:first ; rdf:rest _:252614 . _:252614 rdf:first ; rdf:rest _:252634 . _:252634 rdf:first ; rdf:rest rdf:nil . _:252644 rdf:first ; rdf:rest _:252654 . _:252654 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; owl:propertyChainAxiom _:2526a4, _:252714, _:252774; rdfs:label "has specimen from organism type"@en . _:2526a4 rdf:first ; rdf:rest _:2526c4 . _:2526c4 rdf:first ; rdf:rest _:2526d4 . _:2526d4 rdf:first ; rdf:rest _:2526f4 . _:2526f4 rdf:first ; rdf:rest rdf:nil . _:252714 rdf:first ; rdf:rest _:252734 . _:252734 rdf:first ; rdf:rest _:252754 . _:252754 rdf:first ; rdf:rest rdf:nil . _:252774 rdf:first ; rdf:rest _:252794 . _:252794 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; owl:inverseOf ; rdfs:domain ; rdfs:range ; rdfs:label "follows surveillance protocol"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "excuted in surveillance activity"@en . a owl:ObjectProperty; owl:inverseOf ; rdfs:domain ; rdfs:range ; rdfs:label "has legal basis"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "is legal basis of"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "has surveillance objective"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "has surveillance purpose"@en . a owl:ObjectProperty; rdfs:domain _:252844; rdfs:range ; owl:propertyChainAxiom _:252894; rdfs:label "has surveillance actions"@en . _:252844 a owl:Class; owl:unionOf _:252854 . _:252854 rdf:first ; rdf:rest _:252874 . _:252874 rdf:first ; rdf:rest rdf:nil . _:252894 rdf:first ; rdf:rest _:2528a4 . _:2528a4 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:2528e4; rdfs:range ; owl:propertyChainAxiom _:252944; rdfs:label "has sampling design"@en . _:2528e4 a owl:Class; owl:unionOf _:252904 . _:252904 rdf:first ; rdf:rest _:252914 . _:252914 rdf:first ; rdf:rest rdf:nil . _:252944 rdf:first ; rdf:rest _:252964 . _:252964 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252994; rdfs:range ; owl:propertyChainAxiom _:2529e4; rdfs:label "has reporting protocol"@en . _:252994 a owl:Class; owl:unionOf _:2529a4 . _:2529a4 rdf:first ; rdf:rest _:2529b4 . _:2529b4 rdf:first ; rdf:rest rdf:nil . _:2529e4 rdf:first ; rdf:rest _:252a04 . _:252a04 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252a34; rdfs:range ; owl:propertyChainAxiom _:252aa4; rdfs:label "has sample collection protocol"@en . _:252a34 a owl:Class; owl:unionOf _:252a54 . _:252a54 rdf:first ; rdf:rest _:252a74 . _:252a74 rdf:first ; rdf:rest rdf:nil . _:252aa4 rdf:first ; rdf:rest _:252ab4 . _:252ab4 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252ac4; rdfs:range ; owl:propertyChainAxiom _:252af4; rdfs:label "has diagnostic protocol"@en . _:252ac4 a owl:Class; owl:unionOf _:252ad4 . _:252ad4 rdf:first ; rdf:rest _:252ae4 . _:252ae4 rdf:first ; rdf:rest rdf:nil . _:252af4 rdf:first ; rdf:rest _:252b04 . _:252b04 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:252b14; rdfs:range ; owl:propertyChainAxiom _:252b54; rdfs:label "has surveillance context"@en . _:252b14 a owl:Class; owl:unionOf _:252b24 . _:252b24 rdf:first ; rdf:rest _:252b34 . _:252b34 rdf:first ; rdf:rest rdf:nil . _:252b54 rdf:first ; rdf:rest _:252b74 . _:252b74 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:252ba4; rdfs:range ; rdfs:label "target population"@en . _:252ba4 a owl:Class; owl:unionOf _:252bb4 . _:252bb4 rdf:first ; rdf:rest _:252bd4 . _:252bd4 rdf:first ; rdf:rest _:252be4 . _:252be4 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252c94; rdfs:range ; owl:propertyChainAxiom _:252d04, _:252d44; rdfs:label "target geographical area"@en . _:252c94 a owl:Class; owl:unionOf _:252ca4 . _:252ca4 rdf:first ; rdf:rest _:252cd4 . _:252cd4 rdf:first ; rdf:rest _:252cf4 . _:252cf4 rdf:first ; rdf:rest rdf:nil . _:252d04 rdf:first ; rdf:rest _:252d24 . _:252d24 rdf:first ; rdf:rest _:252d34 . _:252d34 rdf:first ; rdf:rest rdf:nil . _:252d44 rdf:first ; rdf:rest _:252d64 . _:252d64 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252d84; rdfs:range ; owl:propertyChainAxiom _:252e04, _:252e64; rdfs:label "target country"@en . _:252d84 a owl:Class; owl:unionOf _:252da4 . _:252da4 rdf:first ; rdf:rest _:252dc4 . _:252dc4 rdf:first ; rdf:rest _:252dd4 . _:252dd4 rdf:first ; rdf:rest rdf:nil . _:252e04 rdf:first ; rdf:rest _:252e14 . _:252e14 rdf:first ; rdf:rest _:252e34 . _:252e34 rdf:first ; rdf:rest rdf:nil . _:252e64 rdf:first ; rdf:rest _:252e84 . _:252e84 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252ea4; rdfs:range ; owl:propertyChainAxiom _:252f24, _:252f54; rdfs:label "target host species"@en . _:252ea4 a owl:Class; owl:unionOf _:252eb4 . _:252eb4 rdf:first ; rdf:rest _:252ed4 . _:252ed4 rdf:first ; rdf:rest _:252ef4 . _:252ef4 rdf:first ; rdf:rest rdf:nil . _:252f24 rdf:first ; rdf:rest _:252f34 . _:252f34 rdf:first ; rdf:rest _:252f44 . _:252f44 rdf:first ; rdf:rest rdf:nil . _:252f54 rdf:first ; rdf:rest _:252f74 . _:252f74 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:252fb4; rdfs:range ; owl:propertyChainAxiom _:253024, _:253074; rdfs:label "target host sector"@en . _:252fb4 a owl:Class; owl:unionOf _:252fd4 . _:252fd4 rdf:first ; rdf:rest _:252ff4 . _:252ff4 rdf:first ; rdf:rest _:253004 . _:253004 rdf:first ; rdf:rest rdf:nil . _:253024 rdf:first ; rdf:rest _:253044 . _:253044 rdf:first ; rdf:rest _:253064 . _:253064 rdf:first ; rdf:rest rdf:nil . _:253074 rdf:first ; rdf:rest _:253084 . _:253084 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; "Mixed outbreaks"@en; rdfs:label "target pathogen"@en; "causative agent"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "susceptible species"@en . a owl:ObjectProperty; rdfs:domain _:253104; rdfs:range ; owl:propertyChainAxiom _:253184, _:2531e4; "Specification of the type of sampling strategy planned within a surveillance protocol, and ultimately executed in a surveillance activity."; rdfs:label "applies sampling strategy"@en . _:253104 a owl:Class; owl:unionOf _:253124 . _:253124 rdf:first ; rdf:rest _:253144 . _:253144 rdf:first ; rdf:rest _:253154 . _:253154 rdf:first ; rdf:rest rdf:nil . _:253184 rdf:first ; rdf:rest _:2531b4 . _:2531b4 rdf:first ; rdf:rest _:2531c4 . _:2531c4 rdf:first ; rdf:rest rdf:nil . _:2531e4 rdf:first ; rdf:rest _:253204 . _:253204 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:253234; rdfs:range ; owl:propertyChainAxiom _:253294, _:2532f4; rdfs:label "has sampling unit"@en . _:253234 a owl:Class; owl:unionOf _:253254 . _:253254 rdf:first ; rdf:rest _:253264 . _:253264 rdf:first ; rdf:rest _:253274 . _:253274 rdf:first ; rdf:rest rdf:nil . _:253294 rdf:first ; rdf:rest _:2532b4 . _:2532b4 rdf:first ; rdf:rest _:2532d4 . _:2532d4 rdf:first ; rdf:rest rdf:nil . _:2532f4 rdf:first ; rdf:rest _:253324 . _:253324 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:253354; rdfs:range ; owl:propertyChainAxiom _:2533a4, _:2533d4; rdfs:label "has sampler type"@en . _:253354 a owl:Class; owl:unionOf _:253374 . _:253374 rdf:first ; rdf:rest _:253384 . _:253384 rdf:first ; rdf:rest _:253394 . _:253394 rdf:first ; rdf:rest rdf:nil . _:2533a4 rdf:first ; rdf:rest _:2533b4 . _:2533b4 rdf:first ; rdf:rest _:2533c4 . _:2533c4 rdf:first ; rdf:rest rdf:nil . _:2533d4 rdf:first ; rdf:rest _:2533e4 . _:2533e4 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:253424 . _:253424 a owl:Class; owl:unionOf _:253444 . _:253444 rdf:first ; rdf:rest _:253454 . _:253454 rdf:first ; rdf:rest _:253474 . _:253474 rdf:first ; rdf:rest rdf:nil . rdfs:range ; owl:propertyChainAxiom _:253494, _:2534f4; rdfs:label "sampling stage"@en . _:253494 rdf:first ; rdf:rest _:2534b4 . _:2534b4 rdf:first ; rdf:rest _:2534d4 . _:2534d4 rdf:first ; rdf:rest rdf:nil . _:2534f4 rdf:first ; rdf:rest _:253504 . _:253504 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:253534; rdfs:range ; owl:propertyChainAxiom _:2535b4, _:253614; rdfs:label "sampled specimen"@en . _:253534 a owl:Class; owl:unionOf _:253554 . _:253554 rdf:first ; rdf:rest _:253574 . _:253574 rdf:first ; rdf:rest _:253584 . _:253584 rdf:first ; rdf:rest rdf:nil . _:2535b4 rdf:first ; rdf:rest _:2535d4 . _:2535d4 rdf:first ; rdf:rest _:2535e4 . _:2535e4 rdf:first ; rdf:rest rdf:nil . _:253614 rdf:first ; rdf:rest _:253624 . _:253624 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:253654; rdfs:range ; owl:propertyChainAxiom _:2536d4, _:253734; rdfs:label "employs assay"@en . _:253654 a owl:Class; owl:unionOf _:253674 . _:253674 rdf:first ; rdf:rest _:253694 . _:253694 rdf:first ; rdf:rest _:2536a4 . _:2536a4 rdf:first ; rdf:rest rdf:nil . _:2536d4 rdf:first ; rdf:rest _:2536f4 . _:2536f4 rdf:first ; rdf:rest _:253704 . _:253704 rdf:first ; rdf:rest rdf:nil . _:253734 rdf:first ; rdf:rest _:253744 . _:253744 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain _:253774; rdfs:range ; owl:propertyChainAxiom _:253814, _:253884, _:2538e4; "property assigning specific datum to diagnostic tests which allows identification of their type"; rdfs:label "has diagnostic test type"@en . _:253774 a owl:Class; owl:unionOf _:253794 . _:253794 rdf:first ; rdf:rest _:2537b4 . _:2537b4 rdf:first ; rdf:rest _:2537c4 . _:2537c4 rdf:first ; rdf:rest _:2537e4 . _:2537e4 rdf:first ; rdf:rest rdf:nil . _:253814 rdf:first ; rdf:rest _:253824 . _:253824 rdf:first ; rdf:rest _:253854 . _:253854 rdf:first ; rdf:rest _:253864 . _:253864 rdf:first ; rdf:rest rdf:nil . _:253884 rdf:first ; rdf:rest _:2538a4 . _:2538a4 rdf:first ; rdf:rest _:2538c4 . _:2538c4 rdf:first ; rdf:rest rdf:nil . _:2538e4 rdf:first ; rdf:rest _:2538f4 . _:2538f4 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:domain _:253934; rdfs:range ; "assignment of data available as information content to assays"; rdfs:label "has assay datum"@en . _:253934 a owl:Class; owl:unionOf _:253954 . _:253954 rdf:first ; rdf:rest _:253974 . _:253974 rdf:first ; rdf:rest _:253984 . _:253984 rdf:first ; rdf:rest _:253994 . _:253994 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; rdfs:label "reporting country"@en . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; rdfs:label "origin country"@en . a owl:ObjectProperty; owl:inverseOf ; rdfs:domain ; "this property allows metadata documentation to link a dataset to specific entities within each and vice-versa, as long as these entitites ave unique URI, even when the dataset is not itself available as linked data"@en; "this property allows a dataset to be explictly linked to any entities within it which can be referred to with an unique ID."@en; rdfs:label "contains information about"@en . a owl:ObjectProperty; rdfs:range ; "this property allows metadata documentation to link a dataset to specific entities within each and vice-versa, as long as these entitites ave unique URI, even when the dataset is not itself available as linked data"@en; "Links an entityt to a specific dataset that contains information about it."@en; rdfs:label "documented in dataset"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; "this property specifies specifically whic country is responsible for the documentation about a specific surveillance activity"@en; rdfs:label "reporting country"@en . a owl:ObjectProperty; rdfs:domain , ; rdfs:range ; rdfs:label "available in language"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "place of exposure"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; rdfs:label "place of origin of the problem"@en . a owl:ObjectProperty; rdfs:domain _:253c14; rdfs:range ; rdfs:label "hazard status context"@en . _:253c14 a owl:Class; owl:unionOf _:253c24 . _:253c24 rdf:first ; rdf:rest _:253c34 . _:253c34 rdf:first ; rdf:rest rdf:nil . a owl:ObjectProperty . a owl:ObjectProperty; rdfs:domain ; "This document is about information artifacts and their representations"@en; ; "is_about is a (currently) primitive relation that relates an information artifact to an entity."@en; """7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of \"mentions\" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered \"about\" are predications - \"The only person who knows the answer is sitting beside me\" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic."""@en; "person:Alan Ruttenberg"@en; "Smith, Ceusters, Ruttenberg, 2000 years of philosophy"@en; ; rdfs:label "is about"@en . a owl:ObjectProperty . a owl:ObjectProperty . a owl:ObjectProperty; rdfs:label "has material basis in" . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; "The relation between the conclusion \"Gene tpbA is involved in EPS production\" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA. "; ; "The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process"; "OBI"; "OBI", "Philly 2011 workshop"; rdfs:label "is_supported_by_data" . a owl:ObjectProperty; owl:equivalentProperty _:253c44; rdfs:subPropertyOf ; owl:inverseOf ; rdfs:domain ; "has_specified_input"@en, "has_specified_input"; "see is_input_of example_of_usage"@en; ; "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en; "8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works."; "PERSON: Alan Ruttenberg"@en, "PERSON: Bjoern Peters", "PERSON: Larry Hunter", "PERSON: Melanie Coutot"; ; rdfs:label "has_specified_input"@en . _:253c44 owl:inverseOf . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:range ; "is_specified_input_of"; "some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay"@en; ; "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en; "Alan Ruttenberg"@en, "PERSON:Bjoern Peters"; rdfs:label "is_specified_input_of"@en . a owl:ObjectProperty; owl:equivalentProperty _:253c54; rdfs:subPropertyOf ; owl:inverseOf ; rdfs:domain ; "has_specified_output"@en, "has_specified_output"; ; "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en; "PERSON: Alan Ruttenberg"@en, "PERSON: Bjoern Peters", "PERSON: Larry Hunter", "PERSON: Melanie Courtot"; ; rdfs:label "has_specified_output"@en . _:253c54 owl:inverseOf . a owl:ObjectProperty; owl:equivalentProperty _:253c64; rdfs:subPropertyOf ; rdfs:range ; "is_specified_output_of"@en, "is_specified_output_of"; ; "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en; "Alan Ruttenberg"@en, "PERSON:Bjoern Peters"; ; rdfs:label "is_specified_output_of"@en . _:253c64 owl:inverseOf . a owl:ObjectProperty; owl:inverseOf ; rdfs:domain ; rdfs:range ; "achieves_planned_objective"; "A cell sorting process achieves the objective specification 'material separation objective'"; ; "This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process."; "BP, AR, PPPB branch"; "PPPB branch derived"; "modified according to email thread from 1/23/09 in accordince with DT and PPPB branch"; rdfs:label "achieves_planned_objective" . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; "objective_achieved_by"; ; "This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process."; "OBI"; "OBI"; rdfs:label "objective_achieved_by" . a owl:ObjectProperty; owl:inverseOf ; "inheres in"@en; "this fragility inheres in this vase"@en, "this red color inheres in this apple"@en; "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence"@en; "A dependent inheres in its bearer at all times for which the dependent exists."@en; "inheres_in"@en; ; rdfs:label "inheres in"@en . a owl:ObjectProperty; owl:equivalentProperty _:253c74; rdfs:range ; "bearer of"@en; "this apple is bearer of this red color"@en, "this vase is bearer of this fragility"@en; "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en; "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en; "bearer_of"@en, "is bearer of"@en; ; rdfs:label "bearer of"@en . _:253c74 owl:inverseOf . a owl:ObjectProperty; owl:inverseOf ; rdfs:domain ; rdfs:range ; "participates in"@en; "this blood clot participates in this blood coagulation"@en, "this input material (or this output material) participates in this process"@en, "this investigator participates in this investigation"@en; "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en; "participates_in"@en; rdfs:label "participates in"@en . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; "has participant"@en; "this blood coagulation has participant this blood clot"@en, "this investigation has participant this investigator"@en, "this process has participant this input material (or this output material)"@en; "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en; "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."@en; "has_participant"@en; "http://www.obofoundry.org/ro/#OBO_REL:has_participant"; rdfs:label "has participant"@en . a owl:ObjectProperty; owl:equivalentProperty _:253d34; owl:inverseOf ; rdfs:domain ; "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en, "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en; "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."@en; ; rdfs:label "is concretized as"@en . _:253d34 owl:inverseOf . a owl:ObjectProperty; owl:equivalentProperty _:253d54; rdfs:range ; "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en, "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en; "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."@en; ; rdfs:label "concretizes"@en . _:253d54 owl:inverseOf . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:inverseOf ; rdfs:domain ; "this catalysis function is a function of this enzyme"@en; "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en; "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."@en; "function_of"@en, "is function of"@en; rdfs:label "function of"@en . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:inverseOf ; "this red color is a quality of this apple"@en; "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en; "A quality inheres in its bearer at all times for which the quality exists."@en; "is quality of"@en, "quality_of"@en; rdfs:label "quality of"@en . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:inverseOf ; "this investigator role is a role of this person"@en; "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en; "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en; "is role of"@en, "role_of"@en; rdfs:label "role of"@en . a owl:ObjectProperty . a owl:ObjectProperty . a owl:ObjectProperty; owl:equivalentProperty _:253e34; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; "this person has role this investigator role (more colloquially: this person has this role of investigator)"@en; "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en; "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en; "has_role"@en; rdfs:label "has role"@en . _:253e34 owl:inverseOf . a owl:ObjectProperty; owl:inverseOf . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:label "disposition of"@en . a owl:ObjectProperty; owl:equivalentProperty _:253eb4; rdfs:subPropertyOf owl:topObjectProperty; owl:inverseOf ; rdfs:domain ; rdfs:range ; "derives from"; "this cell derives from this parent cell (cell division)"@en, "this nucleus derives from this parent nucleus (nuclear division)"@en; ; "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en; "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'."@en; "derives_from"@en; ; rdfs:label "derives from"@en . _:253eb4 owl:inverseOf . a owl:ObjectProperty . a owl:ObjectProperty; ; "RO:0001015"; "uberon"; "location_of"; "location_of"; rdfs:label "location_of" . a owl:ObjectProperty; rdfs:subPropertyOf owl:topObjectProperty; "a relation between two independent continuants, the target and the location, in which the target is entirely within the location"; ; "RO:0001025"; "uberon"; "RO:0001025", "located_in"; "located_in"; rdfs:label "located in", "located_in" . a owl:ObjectProperty; ; "RO:0002002"; "uberon"; "has_boundary"; "has_boundary"; rdfs:label "has boundary" . a owl:ObjectProperty; rdfs:subPropertyOf ; ; "RO:0002007"; "uberon"; "bounding_layer_of"; "bounding_layer_of"; rdfs:comment "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane."; rdfs:label "bounding layer of" . a owl:ObjectProperty; rdfs:subPropertyOf , ; "Relation between occurrents, shares start and end boundaries."; ; "RO:0002082"; "coincides_with", "is_equal_to"; "uberon"; "simultaneous_with"; "simultaneous_with"; rdfs:label "simultaneous_with" . a owl:ObjectProperty; rdfs:subPropertyOf ; "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"; ; "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]."; "RO:0002087"; "directly preceded by", "is directly preceded by", "is immediately preceded by", "starts_at_end_of"; "uberon"; "immediately_preceded_by"; "immediately_preceded_by"; rdfs:label "immediately_preceded_by"; rdfs:seeAlso . a owl:ObjectProperty, owl:SymmetricProperty; ; "RO:0002150"; "uberon"; "continuous_with"; "continuous_with"; rdfs:label "continuous_with" . a owl:ObjectProperty; rdfs:subPropertyOf ; "Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship."; ; "RO:0002170"; "uberon"; "connected_to"; "connected_to"; rdfs:comment "Connection does not imply overlaps."; rdfs:label "connected to"; rdfs:seeAlso . a owl:ObjectProperty; "Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship."; "this is currently used for both structural relationships (such as between a valve and the chamber it connects) and abstract relationships (anatomical lines and the entities they connect)"; ; "RO:0002176"; "uberon"; "connects"; "connects"; rdfs:label "connects" . a owl:ObjectProperty; rdfs:subPropertyOf ; "relation between an artery and the structure is supplies with blood."; ; "RO:0002178"; "arterial supply of"; "uberon"; "supplies"; "supplies"; rdfs:comment "source: FMA"; rdfs:label "supplies"; rdfs:seeAlso . a owl:ObjectProperty, owl:TransitiveProperty; rdfs:subPropertyOf ; owl:inverseOf ; ; "RO:0002202"; "uberon"; "develops_from"; "develops_from"; rdfs:label "develops_from" . a owl:ObjectProperty; rdfs:subPropertyOf ; ; "RO:0002203"; "uberon"; "develops_into"; "develops_into"; rdfs:label "develops_into" . a owl:ObjectProperty; owl:inverseOf ; "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y"; ; "RO:0002219"; "uberon"; "surrounded_by"; "surrounded_by"; rdfs:label "surrounded_by" . a owl:ObjectProperty, owl:SymmetricProperty; "x adjacent_to y iff: x and y share a boundary"; ; "RO:0002220"; "uberon"; "adjacent_to"; "adjacent_to"; rdfs:label "adjacent_to" . a owl:ObjectProperty; "inverse of surrounded_by"; ; "RO:0002221"; "uberon"; "surrounds"; "surrounds"; rdfs:label "surrounds" . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:inverseOf ; "Relation between occurrents, shares a start boundary with."; ; "RO:0002223"; "uberon"; "starts"; "starts"; rdfs:label "starts" . a owl:ObjectProperty, owl:TransitiveProperty; rdfs:subPropertyOf ; ; "RO:0002224"; "uberon"; "starts_with"; "starts_with"; rdfs:label "starts with" . a owl:ObjectProperty; rdfs:subPropertyOf ; "Relation between occurrents, shares an end boundary with."; ; "RO:0002229"; "finishes"; "uberon"; "ends"; "ends"; rdfs:label "ends" . a owl:ObjectProperty, owl:TransitiveProperty; rdfs:subPropertyOf ; ; "RO:0002230"; "uberon"; "ends_with"; "ends_with"; rdfs:label "ends with" . a owl:ObjectProperty, owl:TransitiveProperty; ; "RO:0002254"; "uberon"; "has_developmental_contribution_from"; "has_developmental_contribution_from"; rdfs:label "has developmental contribution from" . a owl:ObjectProperty; "t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T."; ; "RO:0002256"; "uberon"; "developmentally_induced_by"; "developmentally_induced_by"; rdfs:comment "sources for developmentally_induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)"; rdfs:label "developmentally_induced_by" . a owl:ObjectProperty; ; "RO:0002258"; "uberon"; "developmentally_preceded_by"; "developmentally_preceded_by"; rdfs:label "developmentally preceded by" . a owl:ObjectProperty; ; "RO:0002285"; "uberon"; "developmentally_replaces"; "developmentally_replaces"; rdfs:label "developmentally_replaces" . a owl:ObjectProperty; rdfs:subPropertyOf ; ; "RO:0002351"; "uberon"; "has_member"; "has_member"; rdfs:label "has member" . a owl:ObjectProperty; "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y"; ; "RO:0002385"; "uberon"; "has_potential_to_developmentally_contribute_to"; "has_potential_to_developmentally_contribute_to"; rdfs:label "has potential to developmentally contribute to" . a owl:ObjectProperty; "x has the potential to develop into y iff x develops into y or if x is capable of developing into y"; ; "RO:0002387"; "uberon"; "has_potential_to_develop_into"; "has_potential_to_develop_into"; rdfs:label "has potential to develop into" . a owl:ObjectProperty; ; "RO:0002433"; "uberon"; "contributes_to_morphology_of"; "contributes_to_morphology_of"; rdfs:label "contributes to morphology of" . a owl:ObjectProperty; rdfs:subPropertyOf ; "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y"; ; "RO:0002473"; "uberon"; "composed_primarily_of"; "composed_primarily_of"; rdfs:label "composed primarily of" . a owl:ObjectProperty; rdfs:subPropertyOf ; "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s."; ; "RO:0002488"; "begins_to_exist_during"; "uberon"; "existence_starts_during"; "existence_starts_during"; rdfs:label "existence starts during" . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; "Relation between continuant and occurrent, such that c comes into existence at the start of p."; ; "RO:0002489"; "uberon"; "existence_starts_with"; "existence_starts_with"; rdfs:label "existence starts with" . a owl:ObjectProperty; rdfs:subPropertyOf ; "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely."; ; "RO:0002492"; "ceases_to_exist_during"; "uberon"; "existence_ends_during"; "existence_ends_during"; rdfs:label "existence ends during" . a owl:ObjectProperty; rdfs:subPropertyOf ; rdfs:domain ; "Relation between continuant and occurrent, such that c ceases to exist at the end of p."; ; "RO:0002493"; "uberon"; "existence_ends_with"; "existence_ends_with"; rdfs:label "existence ends with" . a owl:ObjectProperty, owl:TransitiveProperty; rdfs:subPropertyOf ; ; "RO:0002494"; "transforms from"; "uberon"; "transformation_of"; "transformation_of"; rdfs:label "transformation of"; rdfs:seeAlso . a owl:ObjectProperty; rdfs:subPropertyOf ; ; "RO:0002495"; "direct_transformation_of", "immediately transforms from"; "uberon"; "immediate_transformation_of"; "immediate_transformation_of"; rdfs:label "immediate transformation of"; rdfs:seeAlso . a owl:ObjectProperty; ; "RO:0002496"; "uberon"; "existence_starts_during_or_after"; "existence_starts_during_or_after"; rdfs:label "existence starts during or after" . a owl:ObjectProperty; ; "RO:0002497"; "uberon"; "existence_ends_during_or_before"; "existence_ends_during_or_before"; rdfs:label "existence ends during or before" . a owl:ObjectProperty; rdfs:subPropertyOf ; owl:inverseOf ; "A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision."; ; "RO:0002551"; "uberon"; "has sekeletal support", "has supporting framework"; "has_skeleton"; "has_skeleton"; rdfs:label "has skeleton" . a owl:ObjectProperty; rdfs:subPropertyOf ; ; "RO:0002572"; "uberon"; "luminal_space_of"; "luminal_space_of"; rdfs:label "luminal space of" . a owl:ObjectProperty; rdfs:subPropertyOf ; ; "RO:0002576"; "uberon"; "skeleton_of"; "skeleton_of"; rdfs:label "skeleton of" . a owl:ObjectProperty; ; "RO:0003000"; "uberon"; "produces"; "produces"; rdfs:label "produces" . a owl:ObjectProperty; ; "RO:0003001"; "uberon"; "produced_by"; "produced_by"; rdfs:label "produced_by" . a owl:ObjectProperty; rdfs:domain ; rdfs:range ; ; "carries"; "uberon"; "channel_for"; rdfs:label "channel for" . a owl:ObjectProperty, owl:TransitiveProperty; ; "uberon"; "channels_from"; rdfs:label "channels_from" . a owl:ObjectProperty, owl:TransitiveProperty; ; "uberon"; "channels_into"; rdfs:label "channels_into" . a owl:ObjectProperty; "x is a conduit for y iff y passes through the lumen of x."; ; "uberon"; "conduit_for"; rdfs:label "conduit for" . a owl:ObjectProperty; rdfs:subPropertyOf , ; rdfs:domain ; ; "uberon"; "existence_starts_and_ends_during"; rdfs:label "existence starts and ends during" . a owl:ObjectProperty, owl:SymmetricProperty; rdfs:subPropertyOf ; ; "uberon"; "extends_fibers_into"; rdfs:label "extends_fibers_into" . a owl:ObjectProperty; "Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity."; ; "uberon"; "filtered_through"; rdfs:comment "Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed"; rdfs:label "filtered through" . a owl:ObjectProperty; rdfs:subPropertyOf ; "X in_central_side Y <=> if Y is subdivided into left and right portions around some median divisor, all parts of X are closer to the median divisor than the outermost lateral sides."; ; "uberon"; "in_central_side_of"; rdfs:label "in_central_side_of"; rdfs:seeAlso , "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI . a owl:ObjectProperty; ; "uberon"; "protects"; rdfs:label "protects" . a owl:ObjectProperty; rdfs:subPropertyOf , , ; "x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y."; ; "uberon"; "proximally_connected_to"; rdfs:label "proximally connected to" . a owl:ObjectProperty; ; "uberon"; "subdivision_of"; rdfs:comment "placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B"; rdfs:label "subdivision of" . a owl:ObjectProperty, owl:TransitiveProperty; ; "uberon"; "transitively_connected_to"; rdfs:label "transitively_connected to" . a owl:ObjectProperty, owl:TransitiveProperty; "."; ; "uberon"; "transitively_proximally_connected_to"; rdfs:label "transitively proximally connected to" . a owl:DatatypeProperty; rdfs:domain ; rdfs:label "surveillance activity history item"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:date; rdfs:label "surveillance activity start date"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:date; rdfs:label "surveillance activity end date"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of units tested"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of PSU tested"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of SSU tested"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of units positive"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of PSU positive"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of SSU positive"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of units negative"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of PSU negative"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of SSU negative"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of specimen tested"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of specimen negative"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain _:2542f4; rdfs:range xsd:integer; "The sample size calculated for a surveillance activity in order to achieve its specific surveillance purpose or goal, and considering its declared epidemiological unit."@en; rdfs:label "calculated sample size"@en . _:2542f4 a owl:Class; owl:unionOf _:254304 . _:254304 rdf:first ; rdf:rest _:254314 . _:254314 rdf:first ; rdf:rest _:254334 . _:254334 rdf:first ; rdf:rest rdf:nil . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain _:254354; rdfs:range xsd:integer; "The number of herds to be sampled in a survey targetting livestock animals, which are kept in herds."@en; "In a sampling process targetting clustered units, this refers to the number of PRIMARY SAMPLING UNITS to be sampled, according to the plan designed for a surveillance activity in order to achieve its specific surveillance purpose or goal."@en; rdfs:label "calculated number of PSU"@en . _:254354 a owl:Class; owl:unionOf _:254364 . _:254364 rdf:first ; rdf:rest _:254374 . _:254374 rdf:first ; rdf:rest _:254384 . _:254384 rdf:first ; rdf:rest rdf:nil . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain _:254394; rdfs:range xsd:integer; "The number of animals to be sampled within each herd."@en; "In a sampling process targetting clustered units, this refers to the number of SECONDARY SAMPLING UNITS to be sampled, according to the plan designed for a surveillance activity in order to achieve its specific surveillance purpose or goal."@en; rdfs:label "calculated number of SSU"@en . _:254394 a owl:Class; owl:unionOf _:2543a4 . _:2543a4 rdf:first ; rdf:rest _:2543c4 . _:2543c4 rdf:first ; rdf:rest _:2543d4 . _:2543d4 rdf:first ; rdf:rest rdf:nil . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of specimen positive"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range _:254414; rdfs:label "Percentage of units positive"@en . _:254414 a rdfs:Datatype; owl:onDatatype xsd:double; owl:withRestrictions _:254434 . _:254434 rdf:first _:254424; rdf:rest _:254454 . _:254424 xsd:minInclusive 0.0E0 . _:254454 rdf:first _:254444; rdf:rest rdf:nil . _:254444 xsd:maxInclusive 1.0E2 . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range _:254464 . _:254464 a rdfs:Datatype; owl:onDatatype xsd:double; owl:withRestrictions _:254484 . _:254484 rdf:first _:254474; rdf:rest _:2544a4 . _:254474 xsd:minInclusive 0.0E0 . _:2544a4 rdf:first _:254494 . _:254494 xsd:maxInclusive 1.0E2 . _:2544a4 rdf:rest rdf:nil . rdfs:label "Percentage of PSU positive"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range _:2544d4; rdfs:label "Percentage of SSU positive"@en . _:2544d4 a rdfs:Datatype; owl:onDatatype xsd:double; owl:withRestrictions _:2544f4 . _:2544f4 rdf:first _:2544e4; rdf:rest _:254524 . _:2544e4 xsd:minInclusive 0.0E0 . _:254524 rdf:first _:254514; rdf:rest rdf:nil . _:254514 xsd:maxInclusive 1.0E2 . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range _:254534; rdfs:label "percentage of specimen positive"@en . _:254534 a rdfs:Datatype; owl:onDatatype xsd:double; owl:withRestrictions _:254554 . _:254554 rdf:first _:254544; rdf:rest _:254574 . _:254544 xsd:minInclusive 0.0E0 . _:254574 rdf:first _:254564; rdf:rest rdf:nil . _:254564 xsd:maxInclusive 1.0E2 . a owl:DatatypeProperty; rdfs:domain ; "a collection of properties used to assign numeric results to a surveillance activity"@en; rdfs:label "surveillance activity aggregated results"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "surveillance activity year"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "year started"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of cases"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of domestic cases"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range xsd:integer; rdfs:label "Number of imported cases"@en . a owl:DatatypeProperty; rdfs:domain _:2545b4; rdfs:range xsd:double; "the weight of a specific collected specimen. use sub-properties to specify weight units"@en; rdfs:label "specimen weight"@en . _:2545b4 a owl:Class; owl:intersectionOf _:2545d4 . _:2545d4 rdf:first ; rdf:rest _:2545e4 . _:2545e4 rdf:first ; rdf:rest rdf:nil . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain _:2545f4; rdfs:range xsd:double; "the weight of a specific collected specimen, in grams"@en; rdfs:label "sampling weight in grams"@en . _:2545f4 a owl:Class; owl:unionOf _:254604 . _:254604 rdf:first ; rdf:rest _:254624 . _:254624 rdf:first ; rdf:rest rdf:nil . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:domain _:254644; rdfs:range xsd:double; "the weight of a specific collected specimen, in mililitres"@en; rdfs:label "sampling weight in millilitre"@en . _:254644 a owl:Class; owl:unionOf _:254654 . _:254654 rdf:first ; rdf:rest _:254664 . _:254664 rdf:first ; rdf:rest rdf:nil . a owl:DatatypeProperty; rdfs:subPropertyOf ; "The case-fatality rate is the proportion of persons with a particular condition (cases) who die from that condition. It is a measure of the severity of the condition."@en; "https://www.cdc.gov/csels/dsepd/ss1978/lesson3/section3.html"@en; rdfs:label "Case fatality rate"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:label "Hospitalized cases"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:label "Notification rate"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:label "Notification rate in domestic cases"@en . a owl:DatatypeProperty; rdfs:subPropertyOf ; rdfs:label "Number of deaths"@en . a owl:DatatypeProperty; rdfs:domain ; rdfs:range rdfs:Literal; rdfs:label "case definition"@en . a owl:DatatypeProperty . a owl:Class; "entity"; "Entity"; "Julius Caesar"@en, "Verdi’s Requiem"@en, "the Second World War"@en, "your body mass index"@en; "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en, "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"@en; ; "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])"@en; rdfs:isDefinedBy ; rdfs:label "entity"@en . _:2546c4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"@en; ; rdfs:comment "per discussion with Barry Smith"; rdfs:seeAlso . _:254904 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])"@en; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "continuant"; "Continuant"; "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en; "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en, "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en; ; "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en; "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en, "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en, "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en; "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] ", "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] ", "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] ", "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] "; rdfs:isDefinedBy ; rdfs:label "continuant"@en . _:254934 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en; . _:254954 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en; . _:254974 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en; . _:254984 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en; . _:2549a4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en; . _:2549b4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] "; . _:2549c4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] "; . _:2549d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] "; . _:2549e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] "; . a owl:Class; rdfs:subClassOf ; "occurrent"; "Occurrent"; "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region"@en, "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."@en, "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process."@en, "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame."; "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])"@en; "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])"@en, "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])"@en; "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] ", "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] "; rdfs:isDefinedBy ; rdfs:label "occurrent"@en . _:254a14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process."@en; ; rdfs:comment "per discussion with Barry Smith" . _:254a24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame."; . _:254a74 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])"@en; . _:254a84 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])"@en; . _:254a94 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])"@en; . _:254aa4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] "; . _:254ac4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith , ; "ic"; "IndependentContinuant"; "a chair"@en, "a heart"@en, "a leg"@en, "a molecule"@en, "a spatial region"@en, "an atom"@en, "an orchestra."@en, "an organism"@en, "the bottom right portion of a human torso"@en, "the interior of your mouth"@en; "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en; "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en, "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en; "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ", "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] ", "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] "; rdfs:isDefinedBy ; rdfs:label "independent continuant"@en . _:254b04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en; . _:254b14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en; . _:254b24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en; . _:254b44 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] "; . _:254b54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] "; . _:254b64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith , ; "s-region"; "SpatialRegion"; "BFO 2 Reference: Spatial regions do not participate in processes."@en, "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional."@en; "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])"@en; "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])"@en; "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] ", "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] "; rdfs:isDefinedBy ; rdfs:label "spatial region"@en . _:254b84 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional."@en; ; rdfs:comment "per discussion with Barry Smith" . _:254ba4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])"@en; . _:254bc4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])"@en; . _:254c04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001] "; . _:254c14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith , , ; "t-region"; "TemporalRegion"; "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional"@en; "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])"@en; "All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])"@en, "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])"@en; "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] ", "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] ", "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] "; rdfs:isDefinedBy ; rdfs:label "temporal region"@en . _:254c24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional"@en; ; rdfs:comment "per discussion with Barry Smith" . _:254c44 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])"@en; . _:254c54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])"@en; . _:254c64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])"@en; . _:254c74 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002] "; . _:254c84 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001] "; . _:254ca4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "2d-s-region"; "TwoDimensionalSpatialRegion"; "an infinitely thin plane in space."@en, "the surface of a sphere-shaped part of space"@en; "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])"@en; "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] "; rdfs:isDefinedBy ; rdfs:label "two-dimensional spatial region"@en . _:254cb4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])"@en; . _:254cc4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001] "; . a owl:Class; rdfs:subClassOf ; "st-region"; "SpatiotemporalRegion"; "the spatiotemporal region occupied by a human life"@en, "the spatiotemporal region occupied by a process of cellular meiosis."@en, "the spatiotemporal region occupied by the development of a cancer tumor"@en; "A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])"@en; "All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])"@en, "Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])"@en, "Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])"@en, "Every spatiotemporal region occupies_spatiotemporal_region itself."@en, "Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])"@en; "(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] ", "(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] ", "(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] ", "(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] ", "(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] "; rdfs:isDefinedBy ; rdfs:label "spatiotemporal region"@en . _:254cd4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])"@en; . _:254ce4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])"@en; . _:254cf4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])"@en; . _:254d04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])"@en; . _:254d14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])"@en; . _:254d24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002] "; . _:254d34 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001] "; . _:254d44 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001] "; . _:254d54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001] "; . _:254d64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001] "; . a owl:Class; rdfs:subClassOf ; "process"; "Process"; "a process of cell-division, \\ a beating of the heart"@en, "a process of meiosis"@en, "a process of sleeping"@en, "the course of a disease"@en, "the flight of a bird"@en, "the life of an organism"@en, "your process of aging."@en; "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en, "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en; "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)"@en; ; "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] "; rdfs:isDefinedBy ; rdfs:label "process"@en . _:254d74 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en; . _:254d94 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "disposition"; "Disposition"; "an atom of element X has the disposition to decay to an atom of element Y"@en, "certain people have a predisposition to colon cancer"@en, "children are innately disposed to categorize objects in certain ways."@en, "the cell wall is disposed to filter chemicals in endocytosis and exocytosis"@en; "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type."@en; "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])"@en; "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])"@en; "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] ", "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] "; rdfs:isDefinedBy ; rdfs:label "disposition"@en . _:254da4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])"@en; . _:254db4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])"@en; . _:254dc4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] "; . _:254de4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "realizable"; "RealizableEntity"; "the disposition of this piece of metal to conduct electricity."@en, "the disposition of your blood to coagulate"@en, "the function of your reproductive organs"@en, "the role of being a doctor"@en, "the role of this boundary to delineate where Utah and Colorado meet"@en; "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en; ; "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en; "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])"@en; "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] ", "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] "; rdfs:isDefinedBy ; rdfs:label "realizable entity"@en . _:254e04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en; . _:254e14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])"@en; . _:254e24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] "; . _:254e34 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "0d-s-region"; "ZeroDimensionalSpatialRegion"; "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])"@en; "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] "; rdfs:isDefinedBy ; rdfs:label "zero-dimensional spatial region"@en . _:254e54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])"@en; . _:254e64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001] "; . a owl:Class; rdfs:subClassOf ; "quality"; "Quality"; "the ambient temperature of this portion of air"@en, "the color of a tomato"@en, "the length of the circumference of your waist"@en, "the mass of this piece of gold."@en, "the shape of your nose"@en, "the shape of your nostril"@en; "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])"@en; "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])"@en; "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] ", "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] "; rdfs:isDefinedBy ; rdfs:label "quality"@en . _:254e94 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])"@en; . _:254ea4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])"@en; . _:254eb4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] "; . _:254ec4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] "; . a owl:Class; rdfs:subClassOf ; "sdc"; "SpecificallyDependentContinuant"; "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key"@en, "of one-sided specifically dependent continuants: the mass of this tomato"@en, "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates."@en, "the disposition of this fish to decay"@en, "the function of this heart: to pump blood"@en, "the mutual dependence of proton donors and acceptors in chemical reactions [79"@en, "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction"@en, "the pink color of a medium rare piece of grilled filet mignon at its center"@en, "the role of being a doctor"@en, "the shape of this hole."@en, "the smell of this portion of mozzarella"@en; "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en; "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc."@en; "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] "; rdfs:isDefinedBy ; rdfs:label "specifically dependent continuant"@en . _:254ed4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en; . _:254ee4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc."@en; ; rdfs:comment "per discussion with Barry Smith" . _:254ef4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] "; . a owl:Class; rdfs:subClassOf ; "role"; "Role"; "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en, "the priest role"@en, "the role of a boundary to demarcate two neighboring administrative territories"@en, "the role of a building in serving as a military target"@en, "the role of a stone in marking a property boundary"@en, "the role of subject in a clinical trial"@en, "the student role"@en; "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives."@en; "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])"@en; "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] "; rdfs:isDefinedBy ; rdfs:label "role"@en . _:254f04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])"@en; . _:254f14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] "; . a owl:Class; rdfs:subClassOf ; "fiat-object-part"; "FiatObjectPart"; "or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29"@en, "the FMA:regional parts of an intact human body."@en, "the Western hemisphere of the Earth"@en, "the division of the brain into regions"@en, "the division of the planet into hemispheres"@en, "the dorsal and ventral surfaces of the body"@en, "the upper and lower lobes of the left lung"@en; "BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions"@en; "b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])"@en; "(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] "; rdfs:isDefinedBy ; rdfs:label "fiat object part"@en . _:254f24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])"@en; . _:254f34 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "1d-s-region"; "OneDimensionalSpatialRegion"; "an edge of a cube-shaped portion of space."@en; "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])"@en; "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] "; rdfs:isDefinedBy ; rdfs:label "one-dimensional spatial region"@en . _:254f44 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])"@en; . _:254f54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001] "; . a owl:Class; rdfs:subClassOf ; "object-aggregate"; "ObjectAggregate"; "a collection of cells in a blood biobank."@en, "a swarm of bees is an aggregate of members who are linked together through natural bonds"@en, "a symphony orchestra"@en, "an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)"@en, "defined by fiat: the aggregate of members of an organization"@en, "defined through physical attachment: the aggregate of atoms in a lump of granite"@en, "defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container"@en, "defined via attributive delimitations such as: the patients in this hospital"@en, "the aggregate of bearings in a constant velocity axle joint"@en, "the aggregate of blood cells in your body"@en, "the nitrogen atoms in the atmosphere"@en, "the restaurants in Palo Alto"@en, "your collection of Meissen ceramic plates."@en; "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects ", "BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee)."@en; "ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158."; "b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])"@en; "(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] "; rdfs:isDefinedBy ; rdfs:label "object aggregate"@en . _:254f64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects "; . _:254f74 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects "; . _:254f84 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158."; . _:254f94 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])"@en; . _:254fa4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004] "; . a owl:Class; rdfs:subClassOf ; "3d-s-region"; "ThreeDimensionalSpatialRegion"; "a cube-shaped region of space"@en, "a sphere-shaped region of space,"@en; "A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])"@en; "(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] "; rdfs:isDefinedBy ; rdfs:label "three-dimensional spatial region"@en . _:254fb4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])"@en; . _:254fc4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001] "; . a owl:Class; rdfs:subClassOf ; "site"; "Site"; "Manhattan Canyon)"@en, "a hole in the interior of a portion of cheese"@en, "a rabbit hole"@en, "an air traffic control region defined in the airspace above an airport"@en, "the Grand Canyon"@en, "the Piazza San Marco"@en, "the cockpit of an aircraft"@en, "the hold of a ship"@en, "the interior of a kangaroo pouch"@en, "the interior of the trunk of your car"@en, "the interior of your bedroom"@en, "the interior of your office"@en, "the interior of your refrigerator"@en, "the lumen of your gut"@en, "your left nostril (a fiat part – the opening – of your left nasal cavity)"@en; , ; "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])"@en; "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] "; rdfs:comment "Note that this can refer to a material entity like an organ or muscle, or an immaterial entity (a site or fiat boundary) like skin, stomach cavity or lung surface."@en; rdfs:isDefinedBy ; rdfs:label "site"@en . _:254fd4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])"@en; . _:254fe4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002] "; . a owl:Class; rdfs:subClassOf ; "object"; "Object"; "atom"@en, "cell"@en, "cells and organisms"@en, "engineered artifacts"@en, "grain of sand"@en, "molecule"@en, "organelle"@en, "organism"@en, "planet"@en, "solid portions of matter"@en, "star"@en; "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting."@en, "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)."@en, "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47"@en, "BFO 2 Reference: an object is a maximal causally unified material entity"@en, "BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74"@en; "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])"@en; rdfs:isDefinedBy ; rdfs:label "object"@en . _:255054 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])"@en; . a owl:Class; rdfs:subClassOf ; "gdc"; "GenericallyDependentContinuant"; "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en, "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en, "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en; "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en, "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en; ; "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] "; rdfs:isDefinedBy ; rdfs:label "generically dependent continuant"@en . _:255084 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en; . _:255094 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] "; . a owl:Class; rdfs:subClassOf ; "function"; "Function"; "the function of a hammer to drive in nails"@en, "the function of a heart pacemaker to regulate the beating of a heart through electricity"@en, "the function of amylase in saliva to break down starch into sugar"@en; "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc."@en; "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])"@en; "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] "; rdfs:isDefinedBy ; rdfs:label "function"@en . _:2550a4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])"@en; . _:2550b4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] "; . a owl:Class; rdfs:subClassOf ; "p-boundary"; "ProcessBoundary"; "the boundary between the 2nd and 3rd year of your life."@en; "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])"@en; "Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])"@en; "(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] ", "(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] "; rdfs:isDefinedBy ; rdfs:label "process boundary"@en . _:2550c4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])"@en; . _:2550d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])"@en; . _:2550e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002] "; . _:2550f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "1d-t-region"; "OneDimensionalTemporalRegion"; "the temporal region during which a process occurs."@en; "BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks)."@en; "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])"@en; "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] "; rdfs:isDefinedBy ; rdfs:label "one-dimensional temporal region"@en . _:255104 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])"@en; . _:255114 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "material"; "MaterialEntity"; "a flame"@en, "a forest fire"@en, "a human being"@en, "a hurricane"@en, "a photon"@en, "a puff of smoke"@en, "a sea wave"@en, "a tornado"@en, "an aggregate of human beings."@en, "an energy wave"@en, "an epidemic"@en, "the undetached arm of a human being"@en; "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60"@en, "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity."@en, "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here."@en; "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en; "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en, "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en; "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] ", "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] ", "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] "; rdfs:isDefinedBy ; rdfs:label "material entity"@en . _:255124 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en; . _:255134 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en; . _:255144 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en; . _:255154 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] "; . _:255164 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] "; . _:255174 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] "; . a owl:Class; rdfs:subClassOf ; "cf-boundary"; "ContinuantFiatBoundary"; "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])"@en; "BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions."@en, "BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29"@en, "Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions."@en; "Every continuant fiat boundary is located at some spatial region at every time at which it exists"@en; "(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] "; rdfs:isDefinedBy ; rdfs:label "continuant fiat boundary"@en . _:255184 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])"@en; . _:255194 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions."@en; . _:2551b4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001] "; . a owl:Class; rdfs:subClassOf ; "immaterial"; "ImmaterialEntity"; "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10"@en; rdfs:isDefinedBy ; rdfs:label "immaterial entity"@en . a owl:Class; rdfs:subClassOf ; owl:disjointWith , ; "1d-cf-boundary"; "OneDimensionalContinuantFiatBoundary"; "The Equator"@en, "all geopolitical boundaries"@en, "all lines of latitude and longitude"@en, "the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin."@en, "the median sulcus of your tongue"@en; "a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])"@en; "(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] "; rdfs:isDefinedBy ; rdfs:label "one-dimensional continuant fiat boundary"@en . _:2551e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])"@en; . _:2551f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001] "; . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "process-profile"; "ProcessProfile"; "On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels"@en, "One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance."@en, "The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on."@en; "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])"@en; "b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])"@en; "(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] ", "(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] "; rdfs:isDefinedBy ; rdfs:label "process profile"@en . _:255224 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])"@en; . _:255234 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])"@en; . _:255244 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005] "; . _:255254 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002] "; . a owl:Class; rdfs:subClassOf ; "r-quality"; "RelationalQuality"; "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en, "a marriage bond, an instance of love, an obligation between one person and another."@en; "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])"@en; "(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] "; rdfs:isDefinedBy ; rdfs:label "relational quality"@en . _:2552d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])"@en; . _:2552e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001] "; . a owl:Class; rdfs:subClassOf ; "2d-cf-boundary"; "TwoDimensionalContinuantFiatBoundary"; "a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])"@en; "(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] "; rdfs:isDefinedBy ; rdfs:label "two-dimensional continuant fiat boundary"@en . _:2552f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])"@en; . _:255304 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001] "; . a owl:Class; rdfs:subClassOf ; "0d-cf-boundary"; "ZeroDimensionalContinuantFiatBoundary"; "the geographic North Pole"@en, "the point of origin of some spatial coordinate system."@en, "the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet"@en; "zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona."@en; "a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])"@en; "(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] "; rdfs:isDefinedBy ; rdfs:label "zero-dimensional continuant fiat boundary"@en . _:255314 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona."@en; ; rdfs:comment "requested by Melanie Courtot"; rdfs:seeAlso . _:255324 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])"@en; . _:255334 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001] "; . a owl:Class; rdfs:subClassOf ; "0d-t-region"; "ZeroDimensionalTemporalRegion"; "a temporal region that is occupied by a process boundary"@en, "right now"@en, "the moment at which a child is born"@en, "the moment at which a finger is detached in an industrial accident"@en, "the moment of death."@en; "temporal instant."@en; "A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])"@en; "(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] "; rdfs:isDefinedBy ; rdfs:label "zero-dimensional temporal region"@en . _:255344 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])"@en; . _:255354 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001] "; . a owl:Class; rdfs:subClassOf ; "history"; "History"; "A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])"@en; rdfs:isDefinedBy ; rdfs:label "history"@en . _:255364 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])"@en; . a owl:Class; rdfs:subClassOf ; "An independent material continuant that is self-connected and retains its identity over time."; ; rdfs:label "portion of material" . a owl:Class; rdfs:subClassOf ; "specimen extraction matrix"@en; "Those components of a sample that are not measured by an experiment."; ; rdfs:comment "\"This observable is important where process of capturing sample can affect dna extraction.\""@en; rdfs:label "matrix" . a owl:Class; rdfs:subClassOf ; "A bacterial infectious disease that results_in infection by bacteria as a result of their presence or activity within the normal, healthy host, and their intrinsic virulence is, in part, a necessary consequence of their need to reproduce and spread."; "disease_ontology"; "DOID:0050338"; ; rdfs:label "primary bacterial infectious disease" . _:255374 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A bacterial infectious disease that results_in infection by bacteria as a result of their presence or activity within the normal, healthy host, and their intrinsic virulence is, in part, a necessary consequence of their need to reproduce and spread."; ; "url:http://en.wikipedia.org/wiki/Infectious_disease" . a owl:Class; rdfs:subClassOf ; "A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has sypmtoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment."; "ICD10CM:A02.0", "ICD9CM:003.0"; "Salmonella infection"@en; "disease_ontology"; "DOID:0060859"; rdfs:label "salmonellosis" . _:255384 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has sypmtoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment."; ; "url:https://www.cdc.gov/salmonella/general/index.html", "url:https://www.foodsafety.gov/poisoning/causes/bacteriaviruses/salmonella" . a owl:Class; owl:equivalentClass _:255394; "A disease by infectious agent that results_in infection, has_material_basis_in Bacteria."; "ICD10CM:A49.9", "MESH:D001424", "NCI:C2890", "SNOMEDCT_US_2020_03_01:87628006", "UMLS_CUI:C0004623"; "disease_ontology"; "DOID:104"; , , ; rdfs:label "bacterial infectious disease" . _:255394 a owl:Class; owl:intersectionOf _:2553a4 . _:2553a4 rdf:first ; rdf:rest _:2553c4 . _:2553c4 rdf:first _:2553b4; rdf:rest rdf:nil . _:2553b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2553d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A disease by infectious agent that results_in infection, has_material_basis_in Bacteria."; ; "url:http://en.wikipedia.org/wiki/Pathogenic_bacteria" . a owl:Class; rdfs:subClassOf , , _:2553e4, _:2553f4; "A primary bacterial infectious disease that results_in infection located_in intestine, has_material_basis_in Campylobacter jejuni, which is transmitted_by ingestion of contaminated food or water or transmitted_by contact with infected people or animals. The infection has_symptom diarrhea or has_symptom dysentery, has_symptom abdominal cramps and pain, and has_symptom fever."; "DOID:13621"; "MESH:D002169", "SNOMEDCT_US_2020_03_01:86500004", "UMLS_CUI:C0006818"; "Campylobacteriosis"@en; "disease_ontology"; "DOID:13622"; ; rdfs:label "campylobacteriosis" . _:2553e4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2553f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:255404 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A primary bacterial infectious disease that results_in infection located_in intestine, has_material_basis_in Campylobacter jejuni, which is transmitted_by ingestion of contaminated food or water or transmitted_by contact with infected people or animals. The infection has_symptom diarrhea or has_symptom dysentery, has_symptom abdominal cramps and pain, and has_symptom fever."; ; "url:http://en.wikipedia.org/wiki/Campylobacteriosis", "url:http://www.health.state.ny.us/diseases/communicable/campylobacteriosis/fact_sheet.htm" . a owl:Class; rdfs:subClassOf ; "A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen."; "DOID:4094", "DOID:5269"; "ICD10CM:K52.9", "MESH:D005759", "NCI:C34632", "SNOMEDCT_US_2020_03_01:154278002", "UMLS_CUI:C0017160"; "cholera morbus"@en, "infectious colitis, enteritis and gastroenteritis"@en; "disease_ontology"; "DOID:2326"; ; rdfs:label "gastroenteritis"; "MESH:D005759" . _:255414 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A gastrointestinal system infectious disease that involves inflammation of the lining of the stomach and small and large intestines, which is caused by viruses, bacteria, or parasites. Chemicals and drugs also cause gastroenteritis. The symptoms include diarrhea, loss of appetite, nausea, vomiting, cramps, and discomfort in the abdomen."; ; "url:http://www.merck.com/mmhe/sec09/ch122/ch122a.html" . a owl:Class; rdfs:subClassOf ; "A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism."; "MESH:D004194", "NCI:C2991", "SNOMEDCT_US_2020_03_01:64572001", "UMLS_CUI:C0012634"; "disease_ontology"; "DOID:4"; ; rdfs:label "disease" . _:255424 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism."; ; "url:http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" . a owl:Class; rdfs:subClassOf ; "A disease that manifests in a defined anatomical structure."; "DOID:1", "DOID:2", "DOID:5", "DOID:71", "DOID:72", "DOID:8"; "disease_ontology"; "DOID:7"; rdfs:label "disease of anatomical entity" . _:255434 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A disease that manifests in a defined anatomical structure."; ; "url:http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=anatomic" . a owl:Class; owl:equivalentClass _:255444; rdfs:subClassOf ; "A disease of anatomical entity that is located_in the gastrointestinal tract."; "DOID:27", "DOID:944"; "ICD10CM:K92.9", "ICD9CM:520-579.99", "MESH:D004066", "SNOMEDCT_US_2020_03_01:53619000", "UMLS_CUI:C0012242"; "GIT disease"@en, "Gastroenteropathy"@en, "alimentary system disease"@en, "digestive system disorder"@en, "gastrointestinal disease"@en, "gastrointestinal disorder"@en; "disease_ontology"; "DOID:77"; , , ; rdfs:label "gastrointestinal system disease" . _:255444 a owl:Class; owl:intersectionOf _:255454 . _:255454 rdf:first ; rdf:rest _:255474 . _:255474 rdf:first _:255464; rdf:rest rdf:nil . _:255464 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:255484 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A disease of anatomical entity that is located_in the gastrointestinal tract."; ; "url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract" . a owl:Class; rdfs:subClassOf ; ; "FTT:1242", "FTT:1252", "FTT:15", "FTT:16", "FTT:18", "FTT:19", "FTT:21", "FTT:22", "FTT:23", "FTT:24", "FTT:25", "FTT:26", "FTT:27", "FTT:28", "FTT:29", "FTT:37", "SWEETRealm:AdministrativeRegion", "TGN:80001", "TGN:81099", "TGN:81123", "https://en.wikipedia.org/wiki/Administrative_region"; "administrative area"; rdfs:label "administrative region" . a owl:Class; rdfs:subClassOf , , _:255494; "state / province / territory / region"@en; "lookup:http://purl.obolibrary.org/obo/GAZ_00000448"; "A primary administrative division of a country, such as a state in the United States."@en, "A primary administrative division of a country, such as a state in the United States."; ; "FTT:414", "FTT:569", "Geonames:A.ADM1", "TGN:81100"; rdfs:label "first-order administrative region"@en, "first-order administrative region" . _:255494 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A political association with effective dominion over a geographic area."; ; "FTT:424", "FTT:566", "FTT:567", "FTT:571", "SWEETRealm:Country", "SWEETRealm:State", "TGN:80006", "TGN:81010", "TGN:81011", "TGN:81102", "https://en.wikipedia.org/wiki/Nation"; "http://purl.obolibrary.org/obo/NCIT_C25464"@en, "nation"; "independent nation", "independent political entity", "independent sovereign nation"; rdfs:label "national geopolitical entity" . a owl:Class; rdfs:subClassOf ; "Place or area with clustered or scattered buildings and a permanent human population."; , ; "place"; "FTT:1097", "FTT:33", "Geonames:P.PPL", "Geonames:P.PPLS", "TGN:22201", "TGN:83002", "https://en.wikipedia.org/wiki/Populated_place"; "inhabited place", "populated place", "populated places", "settlement"; rdfs:label "populated place" . a owl:Class; rdfs:subClassOf ; "A geographical region whose affairs and population are administered by an authority."; ; "FTT:1093", "Geonames:A.PCL", "TGN:80002"; rdfs:label "political entity" . a owl:Class; rdfs:subClassOf ; "Incorporated populated place."; , ; "urban area"; "EcoLexicon:city", "FTT:430", "FTT:483", "FTT:484", "FTT:485", "SWEETRealm:City", "TGN:83020", "TGN:83040", "TGN:83043", "https://en.wikipedia.org/wiki/City"; "http://purl.obolibrary.org/obo/NCIT_C80234"@en; rdfs:label "city" . a owl:Class; rdfs:subClassOf ; "A site which has its extent determined by the presence or influence of one or more components of an environmental system or the processes occurring therein.", "An environmental zone is an environmental feature whose extent is determined by the presence or influence of one or more material entities or processes. An environmental zone may, itself, assume the role of an environmental feature."; , ; "envoPolar"; rdfs:comment "For example, a intertidal zone is that part of a coast which is exposed to air and water due to tidal processes. It determines the intertidal zone environment. This class is experimental and not suitable for annotation! \"Zone\" is likely to become some form of BFO:site. It is intended to capture entities from both physiography and human geography.", "Formerly, this class was an experimental class and a subclass of \"environmental feature\". It is now aligned to BFO. The class was not obsoleted as the core semantics maintained their stability through its transition."; rdfs:label "environmental zone" . a owl:Class; rdfs:subClassOf ; "A settlement with a high density of buildings and inhabitants."; , ; rdfs:comment "The thresholds for what makes a settlment \"dense\" can be determined as needed. If there is a specific threshold that should be added to ENVO, please make a new class request."; rdfs:label "dense settlement"@en . a owl:Class; rdfs:subClassOf ; "A reference to a place on the Earth, by its name or by its geographical location."; ; "GAZ:00000467"; "geographic region {alternative name}"; rdfs:label "geographic location" . a owl:Class; rdfs:subClassOf ; owl:disjointWith , , ; "region"@en; "lookup:http://purl.obolibrary.org/obo/GAZ_00000448"; ; "A subnational region is a type of subnational entity similar to a nation's state, province, or territory."@en; "Damion Dooley"; rdfs:label "subnational region"@en . a owl:Class; rdfs:subClassOf , _:2554a4; "This is a catch-all category for listing specimen related terms"@en; "Damion Dooley"@en; rdfs:label "specimen datum"@en; rdfs:seeAlso , , , , , , , , , , , , "http://purl.obolibrary.org/obo/GENEPIO_0002105"@en, "http://purl.obolibrary.org/obo/OBI_0001616"^^xsd:anyURI . _:2554a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; , "A designated area on earth is one or more areas defined by one or more boundaries. A boundary can be defined by a polygon perimeter, a lat/long and radius, or a fiat-boundary geographic featureset like a named river channel or mountain ridge; it may have one or more names associated with it. Note that areas associated with a name may change their boundary definitions over time."@en; "Damion Dooley"; rdfs:label "designated area on Earth"@en . a owl:Class; owl:equivalentClass _:2554b4; rdfs:subClassOf ; "a planned process which systematically, continuously or repeatedly measures, collected, collates, analyses, interprets and disseminates health and welfare related data from defined populations."@en; """A specific surveillance activity that is planned and has (or will have) associated results. A surveillance component or a surveillance system could both be a surveillance activity. Ideally, every activity would have unique attributes for methods - for instance, only one sampling stage. If samples are collected in a slaughterhouse AND in farms, these would ideally be modeled as two different activities, and the appropriate properties used to declare them as linked. But since activities are not defined the same in every health surveillance sector, nor do all data support such a granularity, the class is able to model methods and results for any surveillance activity declared. One surveillance activity should have an unique identifier, to which results are linked. The act of being a \"planned activity\" is used in the context of OBI, where his implies the existence of a protocol for action. Therefore, surveillance activities such as outbreak investigations, are also considered a planned process (even if the outbreak itself is not a planned occurrence, the response to one is planned for)."""@en; rdfs:label "Surveillance Activity"@en . _:2554b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:2554c4 . _:2554c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "a role given to a specific herd of domesticated animals, specifying that they are raised in an agricultural setting with a specific purpose."@en; rdfs:label "livestock farming system"@en . a owl:Class; rdfs:subClassOf ; "Classification of livstock farming systems based on the type of commodity produced. Sub-classes are not mutually exclusive."@en; rdfs:label "product oriented farming type"@en . a owl:Class; rdfs:subClassOf ; "MTX"@en; "A0C7P"@en; "Animals farmed for egg production purposes"@en; rdfs:label "egg production"@en . a owl:Class; rdfs:subClassOf ; "MTX"@en; "A0C7G"@en; "Animals farmed for meat production purposes"@en; rdfs:label "meat production"@en . a owl:Class; rdfs:subClassOf ; "MTX"@en; "A0C7N"@en; "Animals farmed for milk production purposes"@en, "milk production"@en; rdfs:label "milk production"@en . a owl:Class; rdfs:subClassOf ; "MTX"@en; "A0C7G"@en; "Animals farmed for breeding purposes"@en; rdfs:label "reproducer"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "supra-national geopolitical entity"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "NUTS region"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "language"@en . a owl:Class; rdfs:subClassOf ; "A directive information that qualifies/classifies specimens."@en; rdfs:comment "Can be inferred if enough information about the specimen is given, but can also be assigned directly when the source of information only specifies the type of speciment (for instance when using the SSD2 terminology, catalog MTXTYP)."@en; rdfs:label "matrix type"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "whole organism"@en . a owl:Class; owl:equivalentClass _:255574; rdfs:subClassOf ; "a specimen collected from an organism."@en; rdfs:comment "inferred categorization of specimens based on the informaiton provided in matrix type and/or regarding the anatomical entity targetted"@en; rdfs:label "matrix from organism"@en . _:255574 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; rdfs:label "fluid specimen"@en . a owl:Class; owl:equivalentClass _:255584; rdfs:subClassOf ; rdfs:label "organ/tissue specimen"@en . _:255584 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; rdfs:label "swab specimen"@en . a owl:Class; owl:equivalentClass _:2555e4; rdfs:subClassOf ; rdfs:label "excreta specimen"@en . _:2555e4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A directive information that describes the context for data collection in support to a specificsurveillance objective."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "surveillance context"@en . a owl:Class; rdfs:subClassOf ; "A directive information used to describe the type of agent who carries out the data collection in a surveillance activity"@en; "surveillance sampler type"@en; "SAMPLR"@en; rdfs:label "surveillance executor type"@en . a owl:Class; rdfs:subClassOf ; "A directive information that describes how population units will be chosen for sample/data collection in a surveillance activity."@en; "https://github.com/SVA-SE/AHSURED/wiki/Description-of-surveillance-items-in-the-checklist"@en, "https://www.fp7-risksur.eu/terminology/glossary"@en; rdfs:comment """Describe how units have been planned to be sampled Sampling at the primary sampling unit (PSU) level Describe the information used to calculate sample size at the PSU level, e.g. the number of PSU in the population (see section 6 also), (between−herd) design prevalence, desired confidence, desired power, sensitivity, specificity. If recommended parameters from international standards are used, indicate the source of such standards (e.g. OIE) Sampling at the secondary sampling unit (SSU) level Describe the information used to calculate sample size at the SSU level, e.g. the number of SSU in the population (see section 6 also), (within−herd) design prevalence, desired confidence, desired power, sensitivity, specificity."""@en; rdfs:label "sampling strategy"@en . a owl:Class; rdfs:subClassOf ; "A sampling unit is one of the units into which an aggregate is divided for the purpose of sampling, each unit being regarded as individual and indivisible when the selection is made."@en; "https://stats.oecd.org/glossary/index.htm"@en; rdfs:label "sampling unit"@en . a owl:Class; rdfs:subClassOf ; "Information about an assay which can be used to find of qualify/classify assays."@en; rdfs:label "assay datum"@en . a owl:Class; rdfs:subClassOf ; "Known diagnostic tests can be classified into groups here so that information such as whether they are an antibody detection or pathogen identification information can be associated to the test, even if this information is not detailed in the data source. As an example, diagnostic tests classifications contained in existing terminologies (such as EFSA SSD2, https://www.efsa.europa.eu/en/efsajournal/pub/3424) can be used to create specific test catehories here."@en; "A test category used to group diagnostic tests based on generla characteristics, such as the target for detection (antigen or antibody)."@en; rdfs:comment "Categorization of diagnostic tests used in health surveillance. This information can be assigned to a test, or inferred from test characteristics if enough information is given about it."@en; rdfs:label "diagnostic test type"@en . a owl:Class; rdfs:subClassOf ; "fecal swab versus a fecal specimen will both have anatomical entity feces, but one will be a swab specimen and the other will be a excreta specimen."@en; "A specimen datum used, in conjunction with information about the target sampled anatomical location, in order to specify _how_ the anatomical entity was sampled"@en; rdfs:label "specimen from organism type"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "whole organism specimen"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "fluid specimen"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "organ/tissue specimen"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "excreta specimen"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "swab specimen"@en . a owl:Class; rdfs:subClassOf ; "s specimen categorization which described the type of entity from which the specimen was collected"@en; rdfs:comment "inferred categorization of specimens based on the matrix type informaiton provided regarding their source"@en; rdfs:label "specimen by origin"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "animal specimen"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "food specimen"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "environmental specimen"@en . a owl:Class; rdfs:subClassOf ; "A collection of all directive information associated with a surveillance activity, such as the surveillance objectives, the action specifications and legislative specification. Everything about a surveillance activity that is related to its planning and methodology."@en; rdfs:comment "A surveillance activity is then a specific execution of a surveillance protocol, which generates specific results. A surveillance protocol exists efore a surveillance activity is carried out, and can exist even in the absence of a surveillance activity - for instance there cna be a surveillance protocol for outbreak investigations, but the exucition of a surveillance activity and associated results will only be available if an outbreak is detected."@en; rdfs:label "surveillance protocol"@en . a owl:Class; rdfs:subClassOf ; "A directive information that details the legislative body that supports a specific surveillance activity, or the specific obligations prescried in these legislation."@en; "All the laws or regulations of a country or region which are related to the obligations or permissions associated with a specific surveillance activity."@en; rdfs:label "legislative specification"@en . a owl:Class; rdfs:subClassOf ; "A directive information that described those goal(s) that when met will result in the collection and analysis of data in order to achieve the purpose of the system"@en; "OIE (2014a). Guide to terrestrial animal health surveillance. Paris, France, OIE."@en, "https://www.fp7-risksur.eu/terminology/glossary"@en; rdfs:label "surveillance objective"@en . a owl:Class; rdfs:subClassOf ; "A directive information that describes why surveillance is necessary and what it will accomplish."@en; "https://github.com/SVA-SE/AHSURED/wiki/"@en, "https://www.fp7-risksur.eu/terminology/glossary"@en; rdfs:label "surveillance purpose"@en . a owl:Class; rdfs:subClassOf ; "A surveillance objective to search for any animals affected, clinically or not, by the hazard under surveillance."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:comment "This objective is appropriate if the hazard is present, regardless of whether the hazard occurrence is endemic, epidemic or sporadic, and action will be taken to control disease whenever it is detected."@en; rdfs:label "case detection"@en . a owl:Class; rdfs:subClassOf ; "A surveillance objective to gather evidence that can demonstrate, with a given confidence level, that a specific hazard is not present in a given population."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:comment "This objective is appropriate if the target hazard is thought to be absent in the territory to be covered and the aim is to demonstrate disease freedom for trade or non−trade purposes (e.g. improve public health, to decide when to stop an eradication programme and to eliminate production losses and control costs due to endemic disease). This may apply to diseases which a) have been historically absent, b) have been eradicated and official freedom has been confirmed or c) are thought to be eradicated, but official freedom has not yet been confirmed."@en; rdfs:label "demonstration of disease freedom"@en . a owl:Class; rdfs:subClassOf ; "A surveillance objective to detect any hazard cases as soon as possible."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:comment "This objective is appropriate for a situation where the disease is currently absent in the country or region. It may be applied to surveillance for an unknown disease or a known disease considered to pose a non−negligible risk of incursion or emergence. It may also apply to the early stages of an outbreak."@en; rdfs:label "early detection"@en . a owl:Class; rdfs:subClassOf ; "A surveillance objective focusedon gathering data to estimate the true or apparent prevalence of a hazard in a given population."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:comment "This objective is appropriate if the target hazard is (thought to be) present in the territory to be covered, and an assessment of the prevalence and or changes in prevalence over time is needed."@en; rdfs:label "prevalence estimation"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "verify health intervention success purpose"@en; "verify success"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "maintaining hazard freedom purpose"@en; "maintain freedom"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "detect hazard introduction purpose"@en; "detect introduction"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "outbreak control purpose"@en; "control outbreak"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "informing health intervention purpose"@en; "inform intervention"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "detect changes in hazard occurrence purpose"@en; "detect changes"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "hazard control purpose"@en; "control"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "hazard erradication purpose"@en; "eradicate"@en . a owl:Class; rdfs:subClassOf ; "This includes for instance the calculated sample size (which can include primary and secondary sampling units in case of clustered units), the frequency of sampling, etc."@en; "A sampling scheme design to meet a specific surveillance objective and/or purpose of a surveillance activity."@en; rdfs:label "sampling design protocol"@en . a owl:Class; rdfs:subClassOf ; "A reporting protocol, generally used within a surveillance activity, detailing what are the reporting obligations associated with a specific surveillance target in a specific area, the reporting chain (who is obliged to report and how is the information flow from reporting), and any eventual incentives for reporting."@en; rdfs:label "reporting protocol"@en . a owl:Class; rdfs:subClassOf ; "A protocol detailing how specimens will be collected as part of the data gathering phase of a surveillance activity."@en; "sample collection protocol"@en; rdfs:comment "This does not include the definition of how many samples will collected, but specifically how they will be collected - where, by whom, etc."@en; rdfs:label "specimen collection protocol"@en . a owl:Class; rdfs:subClassOf ; "A protocol that describes which diagnostic test or tests will be used to identify animals (or another epidemiological unit) infected with a specific pathogen, possibly in more than one round of screening."@en, "A protocol to be used within a surveillance activity to classify epidemiological units according to a specific outcome."@en; rdfs:label "diagnostic protocol"@en . a owl:Class; rdfs:subClassOf ; "An action specification for specific actions to be taken as part of a health surveillance activity."@en; rdfs:label "surveillance methods specification"@en . a owl:Class; rdfs:subClassOf ; "A surveillance context in which sampling in done continuously, triggered by the existing of cases of interest, for instance reporting of confirmed cases or collection of samples from every slaughter batch."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "Continuous data collection"@en . a owl:Class; rdfs:subClassOf ; "A surveillance context in which data are repeated collected from the same selected sites or groups of animals to identify changes in the health status of a specified population over time."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en, "https://www.fp7-risksur.eu/terminology/glossary"@en; rdfs:comment "Surveillance sentinels should act as a proxy for the larger population of interest; they may be selected on the basis of risk but can also be selected randomly or on the basis of convenience or compliance."@en; rdfs:label "Sentinel surveillance"@en . a owl:Class; rdfs:subClassOf ; "A surveillance context which explores traditional information networks by using participatory rural appraisal methods."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en, "https://www.fp7-risksur.eu/terminology/glossary"@en; rdfs:comment "Participatory surveillance explores traditional information networks by using participatory rural appraisal methods such as ranking, scoring and visualisation techniques to conduct risk-based, hazard-specific surveillance. The approach uses semi-structured interviews with key informants. This enables communities to provide their knowledge regarding health events, risks, impacts and control opportunities by gathering qualitative health data from defined populations. The analysis of participatory data emphasises the comparison of information obtained from multiple informants; the method uses a variety of techniques to obtain the most likely interpretation of events. The objective is to enhance sensitivity by identifying cases based on a clinical case definition; these may then be evaluated and confirmed using either rapid tests in the field or laboratory diagnostics. Conventional epidemiological investigation techniques can be used to evaluate and confirm outbreaks detected by participatory surveillance as part of trace-back and trace-forwards activities."@en; rdfs:label "Participatory surveillance"@en . a owl:Class; rdfs:subClassOf ; "A surveillance context in which data are generated through the identification of cases based on agreed-upon definitions."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en, "https://www.fp7-risksur.eu/terminology/glossary"@en; rdfs:comment "Traditional disease surveillance which relies on the collection of data about the occurrence of pre-defined diseases or conditions and which uses agreed-upon case definitions; these data are analysed to produce indicators that point towards the existence of a threat. Indicator-based surveillance may be hazard-specific or general and includes the use of clinical or other data for syndromic surveillance"@en; rdfs:label "Indicator−based surveillance"@en . a owl:Class; rdfs:subClassOf ; "A surveillance context in which health-related information (clinical signs or other data) that might precede or substitute for formal diagnosis are used as indicators of spatio-temporal trends in hazard occurrence."@en; "https://github.com/SVA-SE/AHSURED/wiki"@en, "https://www.fp7-risksur.eu/terminology/glossary#group-S"@en; rdfs:comment "Information collected through syndromic surveillance may be used to indicate a sufficient probability of a change in the health of the population to deserve further investigation or to enable a timely assessment of the impact of health threats which may require action. This type of surveillance is not usually focused on a particular hazard so can be used to detect a variety of diseases or pathogens including new (emerging) diseases. This type of surveillance is particularly applicable for early warning surveillance."@en; rdfs:label "Syndromic surveillance"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "census sampling"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "convenience sampling"@en . a owl:Class; rdfs:subClassOf ; "A sampling strategy in which population units are selected such that each possible unit has a fixed and known or equal probability of selection."@en; "\"Random Sample\" (p.238) in Porta, M. (2014). A Dictionary of Epidemiology (6th ed.). Oxford University Press, Incorporated."@en, "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "simple random sampling"@en; "simple random"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "systematic random sampling"@en; "systematic random"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "risk-based sampling"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "purposeful sampling"@en . a owl:Class; rdfs:subClassOf ; "https://github.com/SVA-SE/AHSURED/wiki"@en; rdfs:label "objective sampling"@en . a owl:Class; rdfs:subClassOf ; "A surveillance context in which activities are specifically triggered by the detection of an outbreak"@en; rdfs:label "outbreak investigation"@en . a owl:Class; rdfs:subClassOf ; "a type of outbreak investigation that focus specifically on foodborne agents/vehicles"@en; rdfs:label "food-borne outbreak investigation"@en . a owl:Class; owl:equivalentClass _:2557a4; rdfs:subClassOf ; "a surveillance activity with the specific surveillance context of investigating a foodborne outbreak"@en; rdfs:label "FBO investigation"@en . _:2557a4 a owl:Class; owl:intersectionOf _:2557b4 . _:2557b4 rdf:first ; rdf:rest _:2557d4 . _:2557d4 rdf:first _:2557c4; rdf:rest rdf:nil . _:2557c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:2557e4; rdfs:subClassOf ; "A sampling strategy in which population units are chosen for investigation into a disease cluster or outbreak."@en, "a specific type of surveillance activity which has as surveillance context an outbreak investigation"@en; rdfs:label "Cluster/Outbreak investigation"@en . _:2557e4 a owl:Class; owl:intersectionOf _:2557f4 . _:2557f4 rdf:first ; rdf:rest _:255814 . _:255814 rdf:first _:255804; rdf:rest rdf:nil . _:255804 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A directive information that described specific detailsgathered during an outbreak investigation."@en; rdfs:label "outbreak investigation datum"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Food vehicle of outbreak"@en; "Food vehicle"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Nature of evidence in an outbreak"@en; "Nature of evidence"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Outbreak contributory factors"@en; "Contributory factors"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Extent of outbreak"@en . a owl:Class; rdfs:subClassOf ; "A directive information that described the manadatory actions that follow on specific agents upon suspicion or confirmation of specific hazards under surveillance."@en; rdfs:label "reporting obligations"@en . a owl:Class; rdfs:subClassOf ; "A directive information used to identify diseases which, by law, must be reported to public health authorities upon diagnosis."@en; rdfs:label "notifiable upon diagnosis"@en . a owl:Class; rdfs:subClassOf ; "A directive information used to identify diseases which, by law, must be reported to public health authorities upon suspicion"@en; rdfs:label "notifiable upon suspicion"@en . a owl:Class; rdfs:subClassOf ; "a quality that specifies the known status of a hazard occurrence in a given geograhial region."@en; rdfs:label "status of hazard presence in a geographical region"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "historically absent"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "absent (eradicated)"@en . a owl:Class; rdfs:subClassOf ; "Single cases without a specific temporal pattern, but also without geographical pattern or other associations and where import to location is related to travel."@en; rdfs:label "sporadic travel-related cases"@en . a owl:Class; rdfs:subClassOf ; "The state of a disease, infection or other condition being maintained in a population without the need of external outputs. The population involved and their geographical location should be specified when defining an endemic state. Present in a community or common among a group of people; said of a disease prevailing continually in a region"@en; rdfs:label "endemic"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "unknown status"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "stratified random sampling"@en . a owl:Class; rdfs:subClassOf ; "A surveillance sampling strategy in which an aspired outcome is explicity stated."@en; "\"Target\" (p.279) in Porta, M. (2014). A Dictionary of Epidemiology (6th ed.). Oxford University Press, Incorporated."@en; rdfs:label "targeted sampling"@en . a owl:Class; rdfs:subClassOf ; "A surveillance sampling strategy in which baseline is established at the beginning of a study or project by the selection of sample units via random sampling."@en; rdfs:label "Baseline surveillance"@en . a owl:Class; rdfs:subClassOf ; "A surveillance sampling strategy in which an aspired outcome is explicity stated."@en; rdfs:label "Targeted surveillance"@en . a owl:Class; rdfs:subClassOf ; "A targeted surveillance strategy in which the aim is early detection of variants of concern (VoC) in individuals."@en; rdfs:label "Screening for Variants of Concern (VoC)"@en . a owl:Class; rdfs:subClassOf ; "A priority surveillance strategy in which subsets of a defined population can be identified who are, have been, or in the future may be exposed or not exposed - or exposed in different degrees - to a disease of interest and are selected to under go repeat sampling over a defined period of time."@en; rdfs:label "Longitudinal surveillance"@en . a owl:Class; rdfs:subClassOf ; "A priority surveillance strategy in which a population that previously tested positive for a disease of interest, and since confirmed to have recovered via a negative test, are monitored for positive test indication of re-infection with the disease of interest within a defined period of time."@en; rdfs:label "Re-infection surveillance"@en . a owl:Class; rdfs:subClassOf ; "A priority surveillance strategy in which population units are monitored for investigation into vaccine escape, i.e., identifying variants that contain mutations that counteracted the immunity provided by vaccine(s) of interest."@en; rdfs:label "Vaccine escape surveillance"@en . a owl:Class; rdfs:subClassOf ; "A priority surveillance strategy in which population units are selected if they have a travel history outside of the reporting region within a specified number of days before onset of symptoms."@en; rdfs:label "Travel-associated surveillance"@en . a owl:Class; rdfs:subClassOf ; "A travel-associated surveillance strategy in which population units are selected if they have an intranational travel history within a specified number of days before onset of symptoms."@en; rdfs:label "Domestic travel surveillance"@en . a owl:Class; rdfs:subClassOf ; "A domestic travel-associated surveillance strategy in which population units are selected if they have a travel history between states or provinces within a specified number of days before onset of symptoms."@en; rdfs:label "Interstate/ interprovincial travel surveillance"@en . a owl:Class; rdfs:subClassOf ; "A domestic travel-associated surveillance strategy in which population units are selected if they have a travel history in a state or province within a specified number of days before onset of symptoms."@en; rdfs:label "Intra-state/ intra-provincial travel surveillance"@en . a owl:Class; rdfs:subClassOf ; "A travel-associated surveillance strategy in which population units are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms."@en; rdfs:label "International travel surveillance"@en . a owl:Class; rdfs:subClassOf ; "An international travel-associated surveillance strategy in which population units are selected if they have a travel history of crossing an international border via air travel or ground transport."@en; rdfs:label "Surveillance of international border crossing by air travel or ground transport"@en . a owl:Class; rdfs:subClassOf ; "An international travel-associated surveillance strategy in which population units are selected if they have a travel history of crossing an international border via air travel."@en; rdfs:label "Surveillance of international border crossing by air travel"@en . a owl:Class; rdfs:subClassOf ; "An international travel-associated surveillance strategy in which population units are selected if they have a travel history of crossing an international border via ground transport."@en; rdfs:label "Surveillance of international border crossing by ground transport"@en . a owl:Class; rdfs:subClassOf ; "A travel-associated surveillance strategy in which population units are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms."@en; rdfs:label "Surveillance from international worker testing"@en . a owl:Class; rdfs:subClassOf ; "An outbreak investigation sampling strategy in which population units are chosen for investigation into a disease outbreak that has connections to two or more jurisdictions."@en; rdfs:label "Multi-jurisdictional outbreak investigation"@en . a owl:Class; rdfs:subClassOf ; "An outbreak investigation sampling strategy in which population units are chosen for investigation into a disease outbreak that only has connections within a single jurisdiction."@en; rdfs:label "Intra-jurisdictional outbreak investigation"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "genetic epidemiology surveillance datum"@en . a owl:Class; rdfs:subClassOf ; "objective specification"@en; "In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction."@en; ; "a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved."@en; "2009-03-16: original definition when imported from OBI read: \"objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed.\""@en, "2014-03-31: In the example of usage (\"In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction\") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that."@en, "Answers the question, why did you do this experiment?"@en; "PERSON: Alan Ruttenberg"@en, "PERSON: Barry Smith"@en, "PERSON: Bjoern Peters"@en, "PERSON: Jennifer Fostel"@en; "goal specification"@en; "OBI Plan and Planned Process/Roles Branch"@en, "OBI_0000217"@en; ; rdfs:label "objective specification"@en . a owl:Class; rdfs:subClassOf ; "Pour the contents of flask 1 into flask 2"@en; ; "a directive information entity that describes an action the bearer will take"@en; "Alan Ruttenberg"@en; "OBI Plan and Planned Process branch"@en; ; rdfs:label "action specification"@en . a owl:Class; rdfs:subClassOf ; "data item"@en; "Data items include counts of things, analyte concentrations, and statistical summaries."@en; ; "a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en; "2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers."@en, "2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum."@en, "2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym."@en, "2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/", """JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief"""@en; "PERSON: Alan Ruttenberg"@en, "PERSON: Chris Stoeckert"@en, "PERSON: Jonathan Rees"@en; "data"@en; ; rdfs:label "data item"@en . a owl:Class; rdfs:subClassOf ; "information content entity"@en; "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en; ; "A generically dependent continuant that is about some thing."@en; "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en, """information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."""@en; "PERSON: Chris Stoeckert"@en; "OBI_0000142"@en; ; rdfs:label "information content entity"@en . a owl:Class; rdfs:subClassOf , _:255b84, _:255b94; "10 feet. 3 ml."@en; ; "a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label."@en; """2009-03-16: we decided to keep datum singular in scalar measurement datum, as in this case we explicitly refer to the singular form"""@en, "Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them."@en; "PERSON: Alan Ruttenberg"@en, "PERSON: Melanie Courtot"@en; rdfs:label "scalar measurement datum"@en . _:255b84 a owl:Restriction; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger . _:255b94 a owl:Restriction; owl:onProperty ; owl:minCardinality "1"^^xsd:nonNegativeInteger . a owl:Class; rdfs:subClassOf , _:255ba4; ; "An information content entity whose concretizations indicate to their bearer how to realize them in a process."@en; "2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was \"is the specification of a process that can be concretized and realized by an actor\" with alternative term \"instruction\".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en, "2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it."@en, "8/6/2009 Alan Ruttenberg: Changed label from \"information entity about a realizable\" after discussions at ICBO"@en, "Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan"@en; "PERSON: Alan Ruttenberg"@en, "PERSON: Bjoern Peters"@en; ; rdfs:label "directive information entity"@en . _:255ba4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "data set"@en; "Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves)."@en; ; "A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets."@en; "2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type"@en, "2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction."; "person:Allyson Lister"@en, "person:Chris Stoeckert"@en; "OBI_0000042"@en, "group:OBI"@en; rdfs:label "data set"@en . a owl:Class; rdfs:subClassOf , _:255bb4, _:255bc4; "plan specification"@en; "PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice."@en; ; "A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified."@en; "2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was \" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan\". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en, "2014-03-31: A plan specification can have other parts, such as conditional specifications."@en, "Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved"@en; "Alan Ruttenberg"@en; "OBI Plan and Planned Process branch"@en, "OBI_0000344"@en; ; rdfs:comment """2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them"""@en; rdfs:label "plan specification"@en . _:255bb4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:255bc4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "measurement datum"@en; "Examples of measurement data are the recoding of the weight of a mouse as {40,mass,\"grams\"}, the recording of an observation of the behavior of the mouse {,process,\"agitated\"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}."@en; ; "A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device."@en; "2/2/2009 is_specified_output of some assay?"@en; "person:Chris Stoeckert"@en; "OBI_0000305"@en, "group:OBI"@en; rdfs:label "measurement datum"@en . a owl:Class; rdfs:subClassOf ; "document"@en; "A journal article, patent application, laboratory notebook, or a book"@en; ; "A collection of information content entities intended to be understood together as a whole"@en; "PERSON: Lawrence Hunter"@en; rdfs:label "document"@en . a owl:Class; rdfs:subClassOf ; ; "A scalar measurement datum that is the result of measuring a temporal interval"@en; "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"@en; "Person:Alan Ruttenberg"@en; rdfs:label "time measurement datum"@en . a owl:Class; rdfs:subClassOf , _:255bd4, _:255be4; "Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database."@en; ; "A planned process in which a document is created or added to by including the specified input in it."@en; "6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape"@en; "Bjoern Peters"@en; "wikipedia http://en.wikipedia.org/wiki/Documenting"@en; rdfs:label "documenting"@en . _:255bd4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:255be4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:255bf4; ; rdfs:label "time stamped measurement datum"@en . _:255bf4 a owl:Class; owl:intersectionOf _:255c14 . _:255c14 rdf:first _:255c04; rdf:rest _:255c34 . _:255c04 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:255c34 rdf:first _:255c24; rdf:rest rdf:nil . _:255c24 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:580032", "NCBITaxon:580034"; "GC_ID:11", "PMID:19767353"; "ncbi_taxonomy"; rdfs:label "Campylobacter volucris" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:11"; "Campylobacter sputorum bv. faecalis"; "ncbi_taxonomy"; "Campylobacter sputorum biovar fecalis", "Campylobacter sputorum bv. fecalis"; rdfs:label "Campylobacter sputorum biovar faecalis" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O157"; ; rdfs:label "Escherichia coli O157" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O111"; ; rdfs:label "Escherichia coli O111" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O103"; ; rdfs:label "Escherichia coli O103" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O113:H21"; ; rdfs:label "Escherichia coli O113:H21" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O45:H2"; ; rdfs:label "Escherichia coli O45:H2" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Newport"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Newport" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O18"; ; rdfs:label "Escherichia coli O18" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; "'Campylobacter faecalis'"; rdfs:label "Campylobacter faecalis" . a owl:Class; rdfs:subClassOf ; "Proteobacteria"; "purple bacteria", "purple bacteria and relatives", "purple non-sulfur bacteria", "purple photosynthetic bacteria", "purple photosynthetic bacteria and relatives"; ; rdfs:label "Proteobacteria" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O103:H11"; ; rdfs:label "Escherichia coli O103:H11" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:1244530", "NCBITaxon:1442825", "NCBITaxon:1442826", "NCBITaxon:1442827"; "GC_ID:11", "PMID:25574036"; "ncbi_taxonomy"; rdfs:label "Campylobacter iguaniorum" . a owl:Class; rdfs:subClassOf ; "Escherichia coli 151_06"; ; rdfs:label "Escherichia coli 151_06" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:11"; "ncbi_taxonomy"; rdfs:label "Campylobacter jejuni X" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:1", "PMID:11743200", "PMID:11791233"; "ncbi_taxonomy"; "Boreotheria"; rdfs:label "Boreoeutheria" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:1448858", "NCBITaxon:1448859"; "GC_ID:11", "PMID:24744327", "PMID:24876239"; "ncbi_taxonomy"; "Campylobacter sp. CIT045", "Campylobacter sp. CIT056", "Campylobacter sp. CIT058"; rdfs:label "Campylobacter corcagiensis" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Hadar"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Hadar" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Enteritidis"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Enteritidis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:24336365", "PMID:24899653"; "ncbi_taxonomy"; rdfs:label "Campylobacter fetus subsp. testudinum" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:1660068", "NCBITaxon:1660069", "NCBITaxon:1886620", "NCBITaxon:1886621", "NCBITaxon:1886668", "NCBITaxon:1886669", "NCBITaxon:1886671"; "GC_ID:11", "PMID:28629508"; "ncbi_taxonomy"; rdfs:label "Campylobacter pinnipediorum subsp. pinnipediorum" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:1780361", "NCBITaxon:1780363"; "GC_ID:11", "PMID:27266587"; "ncbi_taxonomy"; rdfs:label "Campylobacter geochelonis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:27498969"; "ncbi_taxonomy"; rdfs:label "Campylobacter hepaticus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:28126040"; "ncbi_taxonomy"; rdfs:label "Campylobacter ornithocola" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:1660070", "NCBITaxon:1660071"; "GC_ID:11", "PMID:28629508"; "ncbi_taxonomy"; rdfs:label "Campylobacter pinnipediorum subsp. caledonicus" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Stanley"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Stanley" . a owl:Class; rdfs:subClassOf ; "Campylobacter"; ; ; "GC_ID:11", "PMID:11542086", "PMID:12361288", "PMID:16627635", "PMID:1704793", "PMID:19801389", "PMID:29034857"; "ncbi_taxonomy"; "Ampylobacter"; rdfs:label "Campylobacter" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:2172530", "NCBITaxon:2340791", "NCBITaxon:28078"; "GC_ID:11", "PMID:11321120", "PMID:11411703", "PMID:7857809", "PMID:8590689", "PMID:9336905"; "ncbi_taxonomy"; "Campylobacter hyoilei", "Vibrio coli"; rdfs:label "Campylobacter coli" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120", "PMID:1354478"; "ncbi_taxonomy"; "Spirillum fetus", "Vibrio fetus"; rdfs:label "Campylobacter fetus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:28629508"; "ncbi_taxonomy"; rdfs:label "Campylobacter pinnipediorum" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:2172531", "NCBITaxon:2182326", "NCBITaxon:2201165", "NCBITaxon:2211407", "NCBITaxon:2211408", "NCBITaxon:2211409", "NCBITaxon:2293848", "NCBITaxon:2293849", "NCBITaxon:2293850", "NCBITaxon:2303571", "NCBITaxon:2305452", "NCBITaxon:2305453", "NCBITaxon:2305454", "NCBITaxon:2305455", "NCBITaxon:2305456", "NCBITaxon:2305457", "NCBITaxon:2305458", "NCBITaxon:2305459", "NCBITaxon:2340789", "NCBITaxon:2478524"; "GC_ID:11", "PMID:11321120"; "ncbi_taxonomy"; "Ampylobacter jejuni", "Campylobacter fetus subsp. jejuni", "Vibrio hepaticus", "Vibrio jejuni"; rdfs:label "Campylobacter jejuni" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:10425776", "PMID:3998100", "PMID:7547297"; "ncbi_taxonomy"; rdfs:label "Campylobacter hyointestinalis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:28729281"; "ncbi_taxonomy"; rdfs:label "Campylobacter concisus" . a owl:Class; rdfs:subClassOf ; "Bacteria"; "eubacteria"; ; rdfs:label "Bacteria" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:1704793", "PMID:1854636"; "ncbi_taxonomy"; "Wolinella curva"; rdfs:label "Campylobacter curvus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:19406805", "PMID:2223613"; "ncbi_taxonomy"; "Campylobacter laridis"; rdfs:label "Campylobacter lari" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120", "PMID:4614347"; "ncbi_taxonomy"; "Campylobacter sputorum mucosalis", "Campylobacter sputorum subsp. mucosalis"; rdfs:label "Campylobacter mucosalis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:1704793", "PMID:1854636"; "ncbi_taxonomy"; "Wolinella recta"; rdfs:label "Campylobacter rectus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:7694633"; "ncbi_taxonomy"; rdfs:label "Campylobacter showae" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:2044588"; "GC_ID:11", "PMID:29624164"; "ncbi_taxonomy"; rdfs:label "Campylobacter blaseri" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; rdfs:label "Campylobacter sp." . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120", "PMID:9542089"; "ncbi_taxonomy"; "Vibrio sputorum"; rdfs:label "Campylobacter sputorum" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; rdfs:label "Campylobacter jejuni-like bacterium" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O128:H2"; ; rdfs:label "Escherichia coli O128:H2" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O26:H11"; ; rdfs:label "Escherichia coli O26:H11" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:11"; "ncbi_taxonomy"; rdfs:label "unclassified Campylobacter" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:15545485"; "ncbi_taxonomy"; rdfs:label "Campylobacter insulaenigrae" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:1", "PMID:23020233"; "eucaryotes", "eukaryotes"; "ncbi_taxonomy"; "Eucarya", "Eucaryotae", "Eukarya", "Eukaryotae", "eukaryotes"; rdfs:label "Eukaryota" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; "Campylobacter mucosalis-like sp."; rdfs:label "Campylobacter mucosalis-like bacterium" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; "CNW group", "catalase-negative or weak group of campylobacteria"; rdfs:label "Campylobacter upsaliensis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:1479353"; "ncbi_taxonomy"; rdfs:label "Campylobacter helveticus" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica"; ; rdfs:label "Salmonella enterica" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "Campylobacter lawrenci"; "ncbi_taxonomy"; "'Campylobacter lawrenceae '"; rdfs:label "Campylobacter lawrenceae" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120", "PMID:12508904"; "Campylobacter fetus fetus"; "ncbi_taxonomy"; "Vibrio fetus subsp. intestinalis"; rdfs:label "Campylobacter fetus subsp. fetus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120"; "Campylobacter fetus subsp. venereus", "Campylobacter fetus venerealis", "Vibrio foetus venerealis"; "ncbi_taxonomy"; "Vibrio fetus subsp. venerealis"; rdfs:label "Campylobacter fetus subsp. venerealis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120"; "Campylobacter jejuni doylei"; "ncbi_taxonomy"; rdfs:label "Campylobacter jejuni subsp. doylei" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321120"; "Campylobacter jejuni jejuni"; "ncbi_taxonomy"; rdfs:label "Campylobacter jejuni subsp. jejuni" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "Campylobacter sputorum bubulus"; "ncbi_taxonomy"; "Campylobacter bubulus", "Vibrio bubulus"; rdfs:label "Campylobacter sputorum subsp. bubulus" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:11", "PMID:11321120", "PMID:9542089"; "Campylobacter sputorum bv. sputorum", "Campylobacter sputorum sputorum"; "ncbi_taxonomy"; "Campylobacter sputorum subsp. sputorum"; rdfs:label "Campylobacter sputorum biovar sputorum" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:1"; "amniotes"; "ncbi_taxonomy"; rdfs:label "Amniota" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Javiana"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Javiana" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:525139", "NCBITaxon:525140", "NCBITaxon:525141", "NCBITaxon:525142", "NCBITaxon:525143", "NCBITaxon:525144", "NCBITaxon:525145"; "GC_ID:11", "PMID:19542108"; "ncbi_taxonomy"; rdfs:label "Campylobacter cuniculorum" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O103:H2"; ; rdfs:label "Escherichia coli O103:H2" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O142:H6"; ; rdfs:label "Escherichia coli O142:H6" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O26:NM"; ; rdfs:label "Escherichia coli O26:NM" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O26"; ; rdfs:label "Escherichia coli O26" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:2703845"; "GC_ID:11", "PMID:17978232"; "ncbi_taxonomy"; rdfs:label "Campylobacter canadensis" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Virchow"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Virchow" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:19406805"; "ncbi_taxonomy"; rdfs:label "Campylobacter lari subsp. concheus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:19406805"; "ncbi_taxonomy"; rdfs:label "Campylobacter peloridis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:19661523"; "ncbi_taxonomy"; rdfs:label "Campylobacter subantarcticus" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:522483"; "GC_ID:11", "PMID:19620353"; "ncbi_taxonomy"; rdfs:label "Campylobacter avium" . a owl:Class; rdfs:subClassOf ; "Enterobacteriaceae"; ; rdfs:label "Enterobacteriaceae" . a owl:Class; rdfs:subClassOf ; "Salmonella bongori"; ; rdfs:label "Salmonella bongori" . a owl:Class; rdfs:subClassOf ; "Escherichia coli"; "E. coli", "Escherichia/Shigella coli"; ; rdfs:label "Escherichia coli" . a owl:Class; rdfs:subClassOf ; "Salmonella"; ; rdfs:label "Salmonella" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica"; ; rdfs:label "Salmonella enterica subsp. enterica" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:11"; "Campylobacter sputorum bv. paraureolyticus"; "ncbi_taxonomy"; rdfs:label "Campylobacter sputorum biovar paraureolyticus" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Infantis"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Infantis" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Heidelberg"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Heidelberg" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:19406805"; "ncbi_taxonomy"; rdfs:label "Campylobacter lari subsp. lari" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:535089", "NCBITaxon:654364", "NCBITaxon:654365"; "GC_ID:11", "PMID:21278267"; "ncbi_taxonomy"; rdfs:label "Campylobacter troglodytis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:10758898"; "ncbi_taxonomy"; rdfs:label "Campylobacter lanienae" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:11321111", "PMID:7857801", "PMID:8123559", "PMID:9720027"; "ncbi_taxonomy"; "Candidatus Campylobacter hominis"; rdfs:label "Campylobacter hominis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:1854636", "PMID:26383656", "PMID:7857794"; "ncbi_taxonomy"; "Bacteroides gracilis"; rdfs:label "Campylobacter gracilis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:1854636", "PMID:19801389", "PMID:7857794"; "ncbi_taxonomy"; "Bacteroides corrodens", "Bacteroides ureolyticus"; rdfs:label "Campylobacter ureolyticus" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:1"; "bantam", "chicken", "chickens"; "ncbi_taxonomy"; "Gallus domesticus", "Gallus gallus domesticus"; rdfs:label "Gallus gallus" . a owl:Class; rdfs:subClassOf ; "Salmonella enterica subsp. enterica serovar Typhimurium"; ; rdfs:label "Salmonella enterica subsp. enterica serovar Typhimurium" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:10425776", "PMID:7547297"; "ncbi_taxonomy"; rdfs:label "Campylobacter hyointestinalis subsp. hyointestinalis" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11", "PMID:10425776", "PMID:7547297"; "ncbi_taxonomy"; rdfs:label "Campylobacter hyointestinalis subsp. lawsonii" . a owl:Class; rdfs:subClassOf ; ; "GC_ID:1"; "whales, hippos, ruminants, pigs, camels etc."; "ncbi_taxonomy"; "even-toed ungulates"; rdfs:label "Cetartiodactyla" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:1"; "human", "man"; "ncbi_taxonomy"; "Home sapiens", "Homo sampiens", "Homo sapeins", "Homo sapian", "Homo sapians", "Homo sapien", "Homo sapience", "Homo sapiense", "Homo sapients", "Homo sapines", "Homo spaiens", "Homo spiens", "Humo sapiens"; rdfs:label "Homo sapiens" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:1"; "pig", "pigs", "swine", "wild boar"; "ncbi_taxonomy"; "Sus scrofus"; rdfs:label "Sus scrofa" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; rdfs:label "Campylobacter cf. lanienae UB 992" . a owl:Class; rdfs:subClassOf ; ; ; "GC_ID:11"; "ncbi_taxonomy"; rdfs:label "Campylobacter cf. lanienae UB 994" . a owl:Class; rdfs:subClassOf ; ; ; "NCBITaxon:272461"; "GC_ID:1"; "bovine", "cattle", "cow", "dairy cow", "domestic cattle", "domestic cow"; "ncbi_taxonomy"; "Bos Tauurus", "Bos bovis", "Bos primigenius taurus"; rdfs:label "Bos taurus" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O103:H25"; ; rdfs:label "Escherichia coli O103:H25" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O121:H19"; ; rdfs:label "Escherichia coli O121:H19" . a owl:Class; rdfs:subClassOf ; "Escherichia coli O145:NM"; ; rdfs:label "Escherichia coli O145:NM" . a owl:Class; rdfs:subClassOf ; "A collective generic term that refers here to a wide variety of dependencies, areas of special sovereignty, uninhabited islands, and other entities in addition to the traditional countries or independent states."; ; "COUNTRY", "Country"; rdfs:label "Country"; rdfs:seeAlso "http://purl.obolibrary.org/obo/GEO_000000396"^^xsd:anyURI . a owl:Class; rdfs:subClassOf ; owl:disjointWith , ; "lookup:http://purl.obolibrary.org/obo/GAZ_00000448"; ; "A region, district or division of a country; a tract; a portion a state, especially one remote from the capital."; ; "Province"; rdfs:label "Province" . a owl:Class; rdfs:subClassOf , ; "lookup:http://purl.obolibrary.org/obo/GAZ_00000448"; "A political unit, such as a city, town, or village, incorporated for local self-government."; ; "Municipality"; rdfs:label "Municipality"; rdfs:seeAlso "http://semanticscience.org/resource/SIO_000665"@en . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "lookup:http://purl.obolibrary.org/obo/GAZ_00000448"; ; "A constituent administrative district of a nation."; ; "State", "Territory"; rdfs:label "State" . a owl:Class; rdfs:subClassOf ; "lookup:http://purl.obolibrary.org/obo/GAZ_00000448"; ; "A geographical area under the jurisdiction of a sovereign state and marked off for administrative or other purposes."; ; "Territory"; rdfs:label "Territory" . a owl:Class; owl:equivalentClass _:257fe4; rdfs:subClassOf ; "planned process"@en, "planned process"; "Injecting mice with a vaccine in order to test its efficacy"; ; "A processual entity that realizes a plan which is the concretization of a plan specification."@en; "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)", """We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process."""; "Bjoern Peters"; "branch derived"; "6/11/9: Edited at workshop. Used to include: is initiated by an agent", "This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)"@en; ; rdfs:label "planned process"@en . _:257fe4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:257ff4 . _:257ff4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:258004, _:258024, _:258034, _:258254; "investigation"@en; "Lung cancer investigation using expression profiling, a stem cell transplant investigation, biobanking is not an investigation, though it may be part of an investigation"; ; "a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s)."@en; "Bjoern Peters"@en; "OBI branch derived"@en; "Could add specific objective specification", """Following OBI call November 2012,26th: it was decided there was no need for adding \"achieves objective of drawing conclusion\" as existing relations were providing equivalent ability. this note closes the issue and validates the class definition to be part of the OBI core editor = PRS"""@en; ; "study"; rdfs:label "investigation"@en . _:258004 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258024 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258034 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258254 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:258264 . _:258264 a owl:Class; owl:intersectionOf _:258274 . _:258274 rdf:first ; rdf:rest _:258294 . _:258294 rdf:first _:258284; rdf:rest rdf:nil . _:258284 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; owl:disjointWith ; "assay"@en; "Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house."; ; "A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies."@en; "12/3/12: BP: the reference to the 'physical examination' is included to point out that a prediction is not an assay, as that does not require physical examiniation. "; "PlanAndPlannedProcess Branch"@en; "measuring"@en, "scientific observation"@en; "OBI branch derived"@en; ; "study assay"; "any method"; rdfs:label "assay"@en . a owl:Class; rdfs:subClassOf , _:2582a4; "specimen role"; "liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient."; ; "a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation"@en; "22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.", "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.", """blood taken from animal: animal continues in study, whereas blood has role specimen. something taken from study subject, leaves the study and becomes the specimen."""@en, """parasite example - when parasite in people we study people, people are subjects and parasites are specimen - when parasite extracted, they become subject in the following study specimen can later be subject."""@en; "GROUP: Role Branch"; "OBI"; rdfs:label "specimen role"@en . _:2582a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:2582b4 . _:2582b4 a owl:Class; owl:intersectionOf _:2582c4 . _:2582c4 rdf:first ; rdf:rest _:2582e4 . _:2582e4 rdf:first _:2582d4; rdf:rest rdf:nil . _:2582d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "organization"@en; "PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods."@en; ; "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members."@en; """BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: 1) there are organization_member_roles (president, treasurer, branch editor), with individual persons as bearers 2) there are organization_roles (employer, owner, vendor, patent holder) 3) an organization has a charter / rules / bylaws, which specify what roles there are, how they should be realized, and how to modify the charter/rules/bylaws themselves. It is debatable what the organization itself is (some kind of dependent continuant or an aggregate of people). This also determines who/what the bearer of organization_roles' are. My personal favorite is still to define organization as a kind of 'legal entity', but thinking it through leads to all kinds of questions that are clearly outside the scope of OBI. Interestingly enough, it does not seem to matter much where we place organization itself, as long as we can subclass it (University, Corporation, Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, W3C, University of Oklahoma), and have it play roles. This leads to my proposal: We define organization through the statements 1 - 3 above, but without an 'is a' statement for now. We can leave it in its current place in the is_a hierarchy (material entity) or move it up to 'continuant'. We leave further clarifications to BFO, and close this issue for now."""@en; "PERSON: Alan Ruttenberg", "PERSON: Bjoern Peters", "PERSON: Philippe Rocca-Serra", "PERSON: Susanna Sansone"; "GROUP: OBI"; rdfs:label "organization"@en . a owl:Class; rdfs:subClassOf ; "plan"@en; "The plan of researcher X to perform an experiment according to a protocol."; ; "A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a planned process."@en; "This class is included to make clear how the plan specification, the plan, and the planned process relate. OBI will however only subclass and work under the 'plan specification', and 'planned process' class, as we want to avoid to get deep into discussions of 'intend' etc."; "AR, BP, JM, MC, PRS"@en; "branch derived"@en; rdfs:label "plan"@en . a owl:Class; rdfs:subClassOf ; "protocol"@en; "PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR."@en; ; "A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process."@en; "PlanAndPlannedProcess Branch"@en; "OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)"@en; "study protocol"; rdfs:label "protocol"@en . a owl:Class; rdfs:subClassOf , _:258514, _:258524; "interpreting data"; "Concluding that a gene is upregulated in a tissue sample based on the band intensity in a western blot. Concluding that a patient has a infection based on measurement of an elevated body temperature and reported headache. Concluding that there were problems in an investigation because data from PCR and microarray are conflicting. Concluding that 'defects in gene XYZ cause cancer due to improper DNA repair' based on data from experiments in that study that gene XYZ is involved in DNA repair, and the conclusion of a previous study that cancer patients have an increased number of mutations in this gene. "; ; "A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion"@en; "PERSON: Bjoern Peters", "PERSON: Jennifer Fostel"; "Bjoern Peters"; rdfs:label "drawing a conclusion based on data"@en . _:258514 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258524 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf _:258554; "planning"; "The process of a scientist thinking about and deciding what reagents to use as part of a protocol for an experiment. Note that the scientist could be human or a \"robot scientist\" executing software."; ; "a process of creating or modifying a plan specification"@en; "7/18/2011 BP: planning used to itself be a planned process. Barry Smith pointed out that this would lead to an infinite regression, as there would have to be a plan to conduct a planning process, which in itself would be the result of planning etc. Therefore, the restrictions on 'planning' were loosened to allow for informal processes that result in an 'ad hoc plan '. This required changing from 'has_specified_output some plan specifiction' to 'has_participant some plan specification'. "; "Bjoern Peters"; "Bjoern Peters", "Plans and Planned Processes Branch"; rdfs:label "planning"@en . _:258554 a owl:Class; owl:intersectionOf _:258564 . _:258564 rdf:first ; rdf:rest _:258584 . _:258584 rdf:first _:258574; rdf:rest rdf:nil . _:258574 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:258594; rdfs:subClassOf ; "study design execution"; "injecting a mouse with PBS solution, weighing it, and recording the weight according to a study design."; ; "a planned process that carries out a study design"; "removed axiom has_part some (assay or 'data transformation') per discussion on protocol application mailing list to improve reasoner performance. The axiom is still desired."; "branch derived"; "6/11/9: edited at workshop. Used to be: study design execution is a process with the objective to generate data according to a concretized study design. The execution of a study design is part of an investigation, and minimally consists of an assay or data transformation."; ; rdfs:label "study design execution" . _:258594 a owl:Class; owl:intersectionOf _:2585a4 . _:2585a4 rdf:first ; rdf:rest _:2585c4 . _:2585c4 rdf:first _:2585b4; rdf:rest rdf:nil . _:2585b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:2585d4 . _:2585d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:258634; rdfs:subClassOf , _:258674, _:258684; "specimen collection process"; "drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation"; ; "A planned process with the objective of collecting a specimen."; "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.", "Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.", "Philly2013: The specimen_role for the specimen is created during the specimen collection process.", """label changed to 'specimen collection process' on 10/27/2014, details see tracker: http://sourceforge.net/p/obi/obi-terms/716/"""; "Bjoern Peters"; "specimen collection"; "5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession", "6/9/09: used at workshop"; rdfs:label "specimen collection process" . _:258634 a owl:Class; owl:intersectionOf _:258644 . _:258644 rdf:first ; rdf:rest _:258664 . _:258664 rdf:first _:258654; rdf:rest rdf:nil . _:258654 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258674 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258684 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "specimen collection objective"; "The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient."; ; "A objective specification to obtain a material entity for potential use as an input during an investigation."; "Bjoern Peters"; "Bjoern Peters"; rdfs:label "specimen collection objective" . a owl:Class; rdfs:subClassOf ; "hospital"; "human ethics approval was obtained from the Southern Tasmania Health & Medical Human Research Ethics Committee and the Royal Hobart Hospital Research Ethics Committee [pmid:19696660]"; ; "A medical organization at which sick or injured people are given clinical care"; "Person:Alan Ruttenberg", "Person:Helen Parkinson"; "http://www.golovchenko.org/cgi-bin/wnsearch?q=hospital#2n", "modified from the wording of the wordnet definition"; "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"; rdfs:label "hospital" . a owl:Class; rdfs:subClassOf , _:258844, _:258854; """The conclusion that a gene is upregulated in a tissue sample based on the band intensity in a western blot. The conclusion that a patient has a infection based on measurement of an elevated body temperature and reported headache. The conclusion that there were problems in an investigation because data from PCR and microarray are conflicting. The following are NOT conclusions based on data: data themselves; results from pure mathematics, e.g. \"13 is prime\"."""; ; "An information content entity that is inferred from data."; "In the Philly 2013 workshop, we recognized the limitations of \"conclusion textual entity\", and we introduced this as more general. The need for the 'textual entity' term going forward is up for future debate. "; "Group:2013 Philly Workshop group"; "Group:2013 Philly Workshop group"; rdfs:label "conclusion based on data" . _:258844 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258854 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , ; "surveillance process"; "An investigation in which some entity is monitored, and data concerning that entity collected, interpreted, and disseminated, for the purpose of managing, directing, or protecting that entity, or some other entity."; "Chris Stoeckert"; "Shane Babcock, OBI"; "https://github.com/obi-ontology/obi/issues/1181"; "IDO, VEuPathDB"; rdfs:label "surveillance process" . a owl:Class; rdfs:subClassOf ; "organism"@en; "animal"@en, "fungus"@en, "plant"@en, "virus"@en; ; "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en; "10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')", """13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI."""; "GROUP: OBI Biomaterial Branch"; "WEB: http://en.wikipedia.org/wiki/Organism"@en; ; rdfs:label "organism"@en . a owl:Class; owl:equivalentClass _:258864; rdfs:subClassOf ; "specimen"@en; "Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen."; ; "A material entity that has the specimen role."@en; "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation."; "PERSON: James Malone", "PERSON: Philippe Rocca-Serra"; "GROUP: OBI Biomaterial Branch"@en; rdfs:label "specimen"@en . _:258864 a owl:Class; owl:intersectionOf _:258874 . _:258874 rdf:first ; rdf:rest _:258894 . _:258894 rdf:first _:258884; rdf:rest rdf:nil . _:258884 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:2588a4; "study design"@en; "a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design."@en; ; "A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution."; "Editor note: there is at least an implicit restriction on the kind of data transformations that can be done based on the measured data available."; "PERSON: Chris Stoeckert"; "experimental design"@en; "rediscussed at length (MC/JF/BP). 12/9/08). The definition was clarified to differentiate it from protocol."@en; ; rdfs:label "study design"@en . _:2588a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , , _:2588b4, _:2588c4; "The part of the pancreas that is part of the exocrine system and which produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]."; ; "The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion.[TAO]", "The part of the pancreas that acts as an exocrine gland, consisting of the pancreatic acini, which produce pancreatic juice and secrete it into the intestine to aid in protein digestion. [TFD][VHOG]"; "In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG]"; , , , "AAO:0010407", "BTO:0000434", "CALOHA:TS-1241", "EMAPA:35328", "EV:0100093", "FMA:16017", "MA:0002415", "NCIT:C32546", "TAO:0001249", "UMLS:C0553695", "VHOG:0000048", "XAO:0000137", "ZFA:0001249"; "exocrine pancreas", "pars exocrina pancreatis"; "uberon"; "exocrine component of pancreas", "exocrine part of pancreas"; "UBERON:0000017"; , , , ; rdfs:label "exocrine pancreas" . _:2588b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2588c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:258b24; "An organ that is capable of transducing sensory stimulus to the nervous system."; ; ; , , "AEO:0000094", "BSA:0000121", "BTO:0000202", "CALOHA:TS-2043", "EHDAA2:0001824", "EHDAA:500", "EMAPA:35955", "FBbt:00005155", "GAID:63", "HAO:0000930", "MA:0000017", "MESH:D012679", "NCIT:C33224", "UMLS:C0935626", "VHOG:0001407", "WBbt:0006929"; "organ of sense organ system", "organ of sensory organ system", "organ of sensory system", "sense organ system organ", "sensory organ", "sensory organ system organ", "sensory system organ"; "sensillum"; "uberon"; "Sinnesorgan", "sensor"; "UBERON:0000020"; ; rdfs:label "sense organ"; . _:258b24 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:258da4, _:258db4; "Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph."; ; "Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG]"; , , , "BTO:0000784", "CALOHA:TS-0579", "EFO:0000872", "EMAPA:35523", "EV:0100050", "FMA:5034", "GAID:947", "MA:0000139", "MAT:0000442", "MESH:D008198", "NCIT:C12745", "NCIT:C33027", "OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA", "TAO_RETIRED:0005318", "UMLS:C0024204", "VHOG:0001273", "ZFA_RETIRED:0005318", "galen:Lymphnode"; "uberon"; "lymph gland", "nodus lymphaticus"; "UBERON:0000029"; , , , ; rdfs:label "lymph node"; rdfs:seeAlso ; . _:258da4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258db4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , _:258fb4, _:258fc4; "A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]."; "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]"; , , , "AAO:0010396", "BTO:0000706", "CALOHA:TS-1306", "EFO:0000840", "EMAPA:19252", "EV:0100077", "FMA:7201", "GAID:306", "MA:0000333", "MESH:A03.492.411.495", "MIAA:0000046", "NCIT:C12379", "OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA", "UMLS:C0021851", "VHOG:0000054", "XAO:0000131", "galen:LargeIntestine"; "uberon"; "intestinum crassum"; "UBERON:0000059"; , , , ; rdfs:label "large intestine" . _:258fb4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:258fc4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:259004 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "cjm" . _:259344 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]."; , "ISBN10:0073040584" . _:259534 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]"; "2012-09-17"; "VHOG:0000054"; "VHOG"; , "ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566" . _:259544 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0021851"; "ncithesaurus:Large_Intestine" . _:259554 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum crassum"; "BTO:0000706" . a owl:Class; rdfs:subClassOf ; "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome."; ; , , "AAO:0010825", "AEO:0000003", "BILA:0000003", "CARO:0000003", "EHDAA2:0003003", "EMAPA:0", "FBbt:00007001", "FMA:305751", "FMA:67135", "GAID:781", "HAO:0000003", "MA:0003000", "MESH:D000825", "TAO:0000037", "TGMA:0001823", "VHOG:0001759", "XAO:0003000", "ZFA:0000037"; "biological structure", "connected biological structure"; "uberon"; "UBERON:0000061"; ; rdfs:label "anatomical structure" . a owl:Class; rdfs:subClassOf , _:2595c4; "Anatomical structure that performs a specific function or group of functions [WP]."; ; "Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions."; "CARO v1 does not include a generic 'organ' class, only simple and compound organ. CARO v2 may include organ, see https://github.com/obophenotype/caro/issues/4"; , , , , "CARO:0020004", "EFO:0000634", "EMAPA:35949", "ENVO:01000162", "FMA:67498", "MA:0003001", "NCIT:C13018", "OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA", "OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA", "UMLS:C0178784", "WBbt:0003760"; "uberon"; "anatomical unit", "body organ", "element"; "UBERON:0000062"; ; rdfs:label "organ" . _:2595c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:2599a4; "A multicellular structure that is a part of an organ."; "currently defined in a very broad sense, may be replaced by more specific classes in the future"; ; , , , "AAO:0011124", "EFO:0000635", "FMA:82472"; "cardinal organ part"; "uberon"; "regional part of organ"; "UBERON:0000064"; , , ; rdfs:label "organ part" . _:2599a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes."; ; "Outside the plasma membrane, three envelopes surround the ovum. The first, the primary egg envelope, lies between the plasma membrane and the surrounding cells of the ovary. The most consistent component of this primary layer is the vitelline membrane, a transparent jacket of fibrous protein. In mammals, the homologous structure is called the zona pellucida.[well established][VHOG]"; "zona pellucida - vitelline membrane"; , , "BTO:0003135", "EHDAA2:0002220", "EHDAA:31", "EHDAA:62", "EMAPA:16035", "FMA:18674", "GAID:410", "MA:0001715", "MESH:D015044", "NCIT:C33896", "TAO:0001111", "UMLS:C0043519", "VHOG:0000720", "ZFA:0001111"; "uberon"; "oolemma", "pellucid zone", "striated membrane", "vitelline envelope", "vitelline membrane", "zona radiata", "zona striata"; "UBERON:0000086"; , ; rdfs:label "zona pellucida"; . a owl:Class; rdfs:subClassOf ; "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]"; ; "cjm"; "2009-07-30T05:19:13Z"; "membrane"; "FMA:7145"; "membrane of organ"; "uberon"; "UBERON:0000094"; rdfs:label "membrane organ" . a owl:Class; rdfs:subClassOf , _:259c84, _:259c94; "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine."; "This class is probably too inclusive"; "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]", "The tract of the alimentary canal. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "intestinal"; "In zebrafish, No stomach, small intestine, or large intestine can be distinguished. However, differences can be found in the morphology of the mucosa columnar epithelial cells and the number of goblet cells, suggesting functional differentiation. The intestine has numerous folds that become progressively shorter in a rostral-to-caudal direction. Proportionally, these folds are significantly larger than the finger-like intestinal villi of mammals and other amniotes (Wallace et al. 2005). Columnar-shaped absorptive enterocytes are the most numerous in the zebrafish intestinal epithelium. Goblet cells are the second most populous epithelial cell type."; , , , "AAO:0000246", "ANISEED:1235303", "BSA:0000093", "BTO:0000648", "CALOHA:TS-0490", "EFO:0000834", "EMAPA:32874", "EV:0100071", "FMA:7199", "GAID:295", "MA:0000328", "MA:0001524", "MESH:A03.492.411", "MIAA:0000043", "NCIT:C12736", "TAO:0001338", "UMLS:C0021853", "VHOG:0000056", "WBbt:0005772", "XAO:0000129", "ZFA:0001338", "galen:Intestine"; "bowel"; "uberon"; "intestinal tract"; "UBERON:0000160"; , , , ; rdfs:label "intestine" . _:259c84 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:259c94 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:259ec4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "cjm" . _:259ee4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine."; , "GOC:GO" . _:25a1e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]"; "2012-06-20"; "AAO:0000246"; "AAO"; "AAO:EJS" . _:25a1f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The tract of the alimentary canal. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "2012-09-17"; "VHOG:0000056"; "VHOG"; . _:25a4b4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0021853"; "ncithesaurus:Intestine" . a owl:Class; owl:equivalentClass _:25a4d4; rdfs:subClassOf , _:25a534, _:25a584, _:25a5d4, _:25a5e4; "The pair of anatomical structures comprised of a left lung and right lung."; ; "FMA:68877", "OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA"; "lungs", "lungs pair", "pulmones", "set of lungs" . _:25a4d4 a owl:Class; owl:intersectionOf _:25a4e4 . _:25a4e4 rdf:first ; rdf:rest _:25a504 . _:25a504 rdf:first _:25a4f4; rdf:rest _:25a524 . _:25a4f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25a524 rdf:first _:25a514; rdf:rest rdf:nil . _:25a514 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25a534 a owl:Class; owl:intersectionOf _:25a554 . _:25a554 rdf:first _:25a544; rdf:rest _:25a574 . _:25a544 a owl:Restriction; owl:onProperty ; owl:minQualifiedCardinality "1"^^xsd:nonNegativeInteger; owl:onClass . _:25a574 rdf:first _:25a564; rdf:rest rdf:nil . _:25a564 a owl:Restriction; owl:onProperty ; owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger; owl:onClass . _:25a584 a owl:Class; owl:intersectionOf _:25a5a4 . _:25a5a4 rdf:first _:25a594; rdf:rest _:25a5c4 . _:25a594 a owl:Restriction; owl:onProperty ; owl:minQualifiedCardinality "1"^^xsd:nonNegativeInteger; owl:onClass . _:25a5c4 rdf:first _:25a5b4; rdf:rest rdf:nil . _:25a5b4 a owl:Restriction; owl:onProperty ; owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger; owl:onClass . _:25a5d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25a5e4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . "uberon"; "UBERON:0000170"; ; rdfs:label "pair of lungs" . a owl:Class; rdfs:subClassOf , _:25a5f4; "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms."; ; , "EMAPA:17607", "SPD:0000428", "TGMA:0001247"; "apparatus respiratorius organ", "breathing organ", "organ of apparatus respiratorius", "organ of respiratory system", "respiratory organ", "respiratory system organ"; "uberon"; "gas exchange organ"; "UBERON:0000171"; , ; rdfs:label "respiration organ" . _:25a5f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A portion of organism substance that is the product of an excretion process that will be eliminated from the body. An excretion process is elimination by an organism of the waste products that arise as a result of metabolic activity"; ; "UBERON:0000324", "UBERON:0007550"; "AEO:0000184", "BTO:0000491", "EHDAA2_RETIRED:0003184", "ENVO:02000022", "FMA:9674", "galen:Excretion"; "excreted substance", "portion of excreted substance", "waste substance"; "uberon"; "excretion"; "UBERON:0000174"; rdfs:label "excreta" . a owl:Class; rdfs:subClassOf , _:25a984, _:25a9a4; "A fluid that is composed of blood plasma and erythrocytes."; "This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid."; ; "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)[TAO]", "Highly specialized circulating tissue consisting of several types of cells suspended in a fluid medium known as plasma.[AAO]"; "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]"; "Recent findings strongly suggest that the molecular pathways involved in the development and function of blood cells are highly conserved among vertebrates and various invertebrates phyla. (...) There is now good reason to believe that, in vertebrates and invertebrates alike, blood cell lineages diverge from a common type of progenitor cell, the hemocytoblast.[well established][VHOG]"; , ; , , "AAO:0000046", "BTO:0000089", "CALOHA:TS-0079", "EFO:0000296", "EHDAA2:0000176", "EHDAA:418", "EMAPA:16332", "ENVO:02000027", "EV:0100047", "FMA:9670", "GAID:965", "MA:0000059", "MESH:D001769", "MIAA:0000315", "NCIT:C12434", "OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA", "TAO:0000007", "UMLS:C0005767", "VHOG:0000224", "XAO:0000124", "ZFA:0000007", "galen:Blood"; "portion of blood", "vertebrate blood"; "uberon"; "whole blood"; "UBERON:0000178"; , , , ; rdfs:label "blood" . _:25a984 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25a9a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:25aa04; rdfs:subClassOf , _:25aa44; "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs."; ; "cjm"; "2009-04-08T04:38:19Z"; "CARO:0000081"; "uberon"; "blood or blood analog", "circulating fluid"; "UBERON:0000179"; rdfs:label "haemolymphatic fluid" . _:25aa04 a owl:Class; owl:intersectionOf _:25aa14 . _:25aa14 rdf:first ; rdf:rest _:25aa34 . _:25aa34 rdf:first _:25aa24; rdf:rest rdf:nil . _:25aa24 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25aa44 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "An embryo that is at the late embryonic stage; this stage covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching."; "TODO - check fetus/embryo. WP: An embryo is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus."; ; "Fetal structure, which is a developmental form of a vertebrate animal at any given time point from 8 weeks of gestation to birth (or hatching). Examples: There is only one fetus[FMA:63919]."; , , "BTO:0000449", "CALOHA:TS-0360", "EFO:0001323", "FBbt:00005333", "FMA:63919", "GAID:552", "MESH:D005333", "NCIT:C13235", "OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA", "UMLS:C0015965"; "fetus"; "uberon"; "embryo late growth stage", "embryo late stage"; "UBERON:0000323"; , ; rdfs:label "late embryo" . a owl:Class; rdfs:subClassOf , ; "The branched tubular glands found in the mucosa of the fundus and body of the stomach which contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin."; ; "BTO:0000503", "EMAPA:27181", "FMA:14919"; "uberon"; "UBERON:0000325"; , ; rdfs:label "gastric gland" . a owl:Class; rdfs:subClassOf , _:25bfd4; "A gland in which the principal secretory cells are serous secreting cells."; ; "glands that secrete watery albuminous material that often contains enzymes[MP:0008052]."; , "BTO:0001837", "EMAPA:37950", "FMA:62889"; "uberon"; "UBERON:0000409"; , ; rdfs:label "serous gland"; . _:25bfd4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:25bfe4; "A gland in which the principal secretory cells are mucus secreting cells."; ; "In frogs and salamanders, this is the smaller of the two types of gland, the other being the granular (poison) gland. In these species the mucous gland is a cluster of cells that release secretion into a common duct[Kardong]"; , "AAO:0010601", "BTO:0001979", "EMAPA:37913", "FMA:62888"; "glandula mucosa"; "uberon"; "muciparous gland", "mucous secreting gland", "mucus gland", "mucus-secreting gland"; "UBERON:0000414"; ; rdfs:label "mucous gland"; . _:25bfe4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:25c064; rdfs:subClassOf , _:25c0b4; "A portion of organism substance that is produced by exocrine glands."; ; "BTO has two distunct classes, with exocrine glandular secretion a subtype of secretion - however, all examples in BTO directly under secretion appear to be exocrine gland secretions"; "UBERON:0006540"; "secretion"; , "AEO:0001005", "BTO:0002977", "BTO:0002979", "EMAPA:36535", "FMA:9675", "MA:0002504", "MESH:D012634", "NCIT:C34062", "UMLS:C1516992", "galen:Secretion"; "bodily secretion", "exocrine gland fluid/secretion", "secreted substance"; "uberon"; "exocrine gland fluid", "exocrine gland fluid or secretion", "exocrine gland secretion", "external secretion"; "UBERON:0000456"; rdfs:label "secretion of exocrine gland" . _:25c064 a owl:Class; owl:intersectionOf _:25c084 . _:25c084 rdf:first ; rdf:rest _:25c0a4 . _:25c0a4 rdf:first _:25c094; rdf:rest rdf:nil . _:25c094 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25c0b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:25c2c4; "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body."; ; "AAO:0010839", "AEO:0000004", "BILA:0000004", "CALOHA:TS-2101", "CARO:0000004", "EHDAA2:0003004", "EMAPA:35178", "FBbt:00007019", "FMA:9669", "HAO:0000004", "MA:0002450", "NCIT:C13236", "SPD:0000008", "TAO:0001487", "TGMA:0001824", "VHOG:0001726", "XAO:0004001", "ZFA:0001487", "galen:BodySubstance"; "body fluid or substance", "body substance", "organism substance", "portion of body substance", "portion of organism substance"; "uberon"; "UBERON:0000463"; , ; rdfs:label "organism substance" . _:25c2c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Anatomical entity that has mass."; ; "AAO:0010264", "AEO:0000006", "BILA:0000006", "CARO:0000006", "EHDAA2:0003006", "FBbt:00007016", "FMA:67165", "HAO:0000006", "TAO:0001836", "TGMA:0001826", "VHOG:0001721"; "uberon"; "UBERON:0000465"; ; rdfs:label "material anatomical entity" . a owl:Class; rdfs:subClassOf , _:25c534, _:25c544; "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function."; ; "system"; , , , , "AAO:0000007", "AEO:0000011", "BILA:0000011", "BSA:0000049", "CALOHA:TS-2088", "CARO:0000011", "EHDAA2:0003011", "EHDAA:392", "EMAPA:16103", "EV:0100000", "FBbt:00004856", "FMA:7149", "HAO:0000011", "MA:0000003", "NCIT:C12919", "OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ", "TAO:0001439", "TGMA:0001831", "UMLS:C0460002", "VHOG:0001725", "WBbt:0005746", "WBbt:0005763", "XAO:0003002", "ZFA:0001439", "galen:AnatomicalSystem"; "body system", "connected anatomical system", "organ system"; "uberon"; "anatomical systems"; "UBERON:0000467"; , , ; rdfs:label "anatomical system"; rdfs:seeAlso . _:25c534 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25c544 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Anatomical structure that is an individual member of a species and consists of more than one cell."; "TODO - split body and mc organism? body continues after death stage"; ; "organismal"; "organism"; , , , "AAO:0010026", "AEO:0000191", "BILA:0000012", "BSA:0000038", "BTO:0000042", "CARO:0000012", "EFO:0002906", "EHDAA2:0003103", "EHDAA2:0003191", "EHDAA:1", "EMAPA:25765", "EV:0100016", "FBbt:00000001", "FMA:256135", "HAO:0000012", "NCIT:C13041", "TADS:0000001", "TAO:0001094", "TGMA:0001832", "VHOG:0000671", "WBbt:0007833", "XAO:0003004", "ZFA:0001094", "galen:Organism", "ncithesaurus:Whole_Organism"; "multi-cellular organism"; "animal"; "uberon"; "Koerper", "body", "whole body", "whole organism"; "UBERON:0000468"; , , , ; rdfs:label "multicellular organism" . a owl:Class; rdfs:subClassOf ; "The organs and associated structures associated with bearing offspring in a female animal."; ; "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]"; , , , "BTO:0000083", "CALOHA:TS-1303", "EFO:0000969", "EHDAA2:0000506", "EHDAA:8116", "EMAPA:17959", "EV:0100110", "FBbt:00004864", "FMA:45663", "GAID:364", "HAO:0000324", "MA:0000381", "MESH:D005836", "MIAA:0000028", "NCIT:C12402", "OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA", "TGMA:0000635", "UMLS:C0700038", "VHOG:0000726", "WBbt:0006748", "WikipediaCategory:Female_reproductive_system", "XAO:0000156"; "female organism genitalia", "female organism reproductive system", "genitalia of female organism", "reproductive system of female organism"; "uberon"; "female genital system", "female genital tract", "female genitalia", "female genitals", "female reproductive tract", "gynaecological tissue", "systema genitale femininum"; "UBERON:0000474"; , , ; rdfs:label "female reproductive system"; . a owl:Class; rdfs:subClassOf ; "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue."; ; "AAO:0010268", "AEO:0000040", "BILA:0000040", "CARO:0000040", "EHDAA2:0003040", "FBbt:00007013", "FMA:63863", "HAO:0000040", "TAO:0000382", "TGMA:0001841", "XAO:0003162", "ZFA:0000382"; "uberon"; "acellular anatomical structures"; "UBERON:0000476"; ; rdfs:label "acellular anatomical structure" . a owl:Class; rdfs:subClassOf , _:25c8d4; "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation."; "changed label and definition to reflect CARO2"; ; , , "AAO:0000607", "AAO:0010054", "AEO:0000043", "BILA:0000043", "CALOHA:TS-2090", "CARO:0000043", "EHDAA2:0003043", "EMAPA:35868", "FBbt:00007003", "FMA:9637", "HAO:0000043", "MA:0003002", "MESH:D014024", "NCIT:C12801", "TAO:0001477", "TGMA:0001844", "UMLS:C0040300", "VHOG:0001757", "WBbt:0005729", "XAO:0003040", "ZFA:0001477", "galen:Tissue"; "portion of tissue", "tissue portion"; "simple tissue"; "uberon"; "UBERON:0000479"; , ; rdfs:label "tissue" . _:25c8d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:25cac4; "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types."; ; "AAO:0010048", "AEO:0000055", "BILA:0000055", "CARO:0000055", "EHDAA2:0003055", "FBbt:00007010", "HAO:0000055", "TAO:0001488", "TGMA:0001847", "VHOG:0001762", "XAO:0003037", "ZFA:0001488"; "uberon"; "multi-tissue structures"; "UBERON:0000481"; ; rdfs:label "multi-tissue structure" . _:25cac4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Compound organ that contains one or more macroscopic anatomical spaces."; "this class was introduced for consistency with CARO, however, it has yet to be used in this or other ontologies. It may be retired in the future"; ; "AAO:0010016", "AEO:0000072", "BILA:0000072", "CARO:0000072", "EHDAA2:0003072", "FMA:55671", "HAO:0000072", "TAO:0001490", "TGMA:0001857", "VHOG:0001730", "XAO:0003165", "ZFA:0001490"; "cavitated organ"; "uberon"; "cavitated compound organs"; "UBERON:0000489"; , ; rdfs:label "cavitated compound organ" . a owl:Class; rdfs:subClassOf , ; "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water."; ; "mucoid", "mucous"; , , "CALOHA:TS-2144", "ENVO:02000040", "FMA:66938", "GAID:1164", "MESH:D009093", "NCIT:C13259", "OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA", "UMLS:C0026727", "galen:Mucus"; "uberon"; "UBERON:0000912"; rdfs:label "mucus" . a owl:Class; rdfs:subClassOf , _:25cdf4; "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid."; ; , "ENVO:02000042", "FMA:9673", "NCIT:C120839"; "intercellular fluid", "tissue fluid"; "uberon"; "UBERON:0000913"; ; rdfs:label "interstitial fluid" . _:25cdf4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant."; ; "embryonic"; "Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo"; , , , , "AAO:0011035", "AEO:0000169", "BILA:0000056", "BSA:0000039", "BTO:0000379", "CALOHA:TS-0229", "EFO:0001367", "EHDAA2:0000002", "EHDAA2_RETIRED:0003236", "EHDAA:38", "EMAPA:16039", "FBbt:00000052", "FMA:69068", "GAID:963", "MAT:0000226", "MESH:D004622", "MIAA:0000019", "NCIT:C28147", "OGEM:000001", "OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA", "UMLS:C0013935", "VHOG:0001766", "XAO:0000113", "ZFA:0000103"; "embryonic organism"; "uberon"; "developing organism", "developmental tissue"; "UBERON:0000922"; , , , ; rdfs:label "embryo"; rdfs:seeAlso ; . a owl:Class; rdfs:subClassOf , , _:25d594; "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium."; "Portion of alimentary canal with increased circular and longitudinal smooth muscle. Bounded posteriorly by the pyloric sphincter. Mucosal lining has increased folding.[AAO]"; "It appears that the stomach has an ancient origin. The stomach first appears in the fish lineage. The prevertebrate chordates do not have a true stomach, whereas the cartilaginous and bony fish do. Although most fish do have a true stomach, some fish species appear to have lost the stomach secondarily. The remaining vertebrate lineages do have a true stomach (at least in the adult animal), although there is great variation in the size and shape of the stomach.[well established][VHOG]"; "We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa"; , , , "AAO:0000579", "ANISEED:1235297", "BTO:0001307", "CALOHA:TS-0980", "EFO:0000837", "EHDAA2:0001915", "EHDAA:2993", "EMAPA:17021", "EV:0100070", "FMA:7148", "GAID:293", "MA:0000353", "MAT:0000051", "MESH:A03.492.766", "MIAA:0000051", "NCIT:C12391", "OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA", "TAO:0002121", "UMLS:C0038351", "VHOG:0000408", "XAO:0000128", "galen:Stomach"; "stomach chamber"; "uberon"; "anterior intestine", "gaster", "mesenteron", "ventriculus"; "UBERON:0000945"; , , , , , ; rdfs:label "stomach"; . _:25d594 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25db44 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "cjm" . _:25db64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "cjm" . _:25dbf4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium."; , , "ISBN10:0073040584" . _:25dd14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Portion of alimentary canal with increased circular and longitudinal smooth muscle. Bounded posteriorly by the pyloric sphincter. Mucosal lining has increased folding.[AAO]"; "2012-06-20"; "AAO:0000579"; "AAO"; "AAO:EJS" . _:25de54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "It appears that the stomach has an ancient origin. The stomach first appears in the fish lineage. The prevertebrate chordates do not have a true stomach, whereas the cartilaginous and bony fish do. Although most fish do have a true stomach, some fish species appear to have lost the stomach secondarily. The remaining vertebrate lineages do have a true stomach (at least in the adult animal), although there is great variation in the size and shape of the stomach.[well established][VHOG]"; "2012-09-17"; "VHOG:0000408"; "VHOG"; , "DOI:10.1046/j.1525-142x.2000.00076.x Smith DM, Grasty RC, Theodosiou NA, Tabin CJ, Nascone-Yoder NM, Evolutionary relationships between the amphibian, avian, and mammalian stomachs. Evolution and development (2000)" . _:25de64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa"; "WP:Stomach#In_other_animals" . _:25e094 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0038351"; "ncithesaurus:Stomach" . _:25e0e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "gaster"; "BTO:0001307" . _:25e0f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "ventriculus"; ; . a owl:Class; rdfs:subClassOf , _:25e164; "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity."; ; "Anatomical system containing glands which regulates bodily functions though the secretion of hormones.[AAO]"; "Multicellular organisms have complex endocrine systems, allowing responses to environmental stimuli, regulation of development, reproduction, and homeostasis. Nuclear receptors (NRs), a metazoan-specific family of ligand-activated transcription factors, play central roles in endocrine responses, as intermediates between signaling molecules and target genes. The NR family includes ligand-bound and orphan receptors, that is, receptors with no known ligand or for which there is no ligand Pocket. Understanding NR evolution has been further improved by comparison of several completed genomes, particularly those of deuterostomes and ecdysozoans. In contrast, evolution of NR ligands is still much debated. One hypothesis proposes that several independent gains and losses of ligand-binding ability in NRs occurred in protostomes and deuterostomes. A second hypothesis, pertaining to the NR3 subfamily (vertebrate steroid hormone receptors and estrogen related receptor), proposes that before the divergence of protostomes and deuterostomes, there was an ancestral steroid receptor (AncSR) that was ligand-activated and that orphan receptors secondarily lost the ability to bind a ligand. (...) Our analysis reveals that steroidogenesis has been independently elaborated in the 3 main bilaterian lineages (...).[well established][VHOG]"; "endocrine"; , , , "AAO:0010279", "CALOHA:TS-1301", "EFO:0002969", "EHDAA2:0002224", "EMAPA:35306", "EV:0100128", "FBbt:00005068", "FMA:9668", "GAID:439", "MA:0000012", "MESH:D004703", "NCIT:C12705", "TAO:0001158", "UMLS:C0014136", "VHOG:0000098", "XAO:0000158", "ZFA:0001158"; "endocrine glandular system", "endocrine system", "systema endocrinum"; "uberon"; "UBERON:0000949"; , , , ; rdfs:label "endocrine system" . _:25e164 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , _:25e6b4, _:25e6f4; "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]."; "requires review for applicability to invertebrate structures, e.g. synganglion"; ; "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]", "Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]", "The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)"; "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]"; ; , , , , , , "AAO:0010478", "ABA:Brain", "BAMS:Br", "BAMS:Brain", "BILA:0000135", "BTO:0000142", "CALOHA:TS-0095", "DHBA:10155", "EFO:0000302", "EHDAA2:0000183", "EHDAA:2641", "EHDAA:6485", "EMAPA:16894", "EV:0100164", "FBbt:00005095", "FMA:50801", "GAID:571", "HBA:4005", "MA:0000168", "MAT:0000098", "MBA:8", "MBA:997", "MESH:D001921", "MIAA:0000098", "NCIT:C12439", "OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA", "PBA:3999", "TAO:0000008", "UMLS:C0006104", "UMLS:C1269537", "VHOG:0000157", "XAO:0000010", "ZFA:0000008", "galen:Brain", "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=21"; "uberon"; "encephalon", "suprasegmental levels of nervous system", "suprasegmental structures", "synganglion", "the brain"; "UBERON:0000955"; , , , , , ; rdfs:label "brain" . _:25e6b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:25e6f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Anatomical system that has as its parts the organs concerned with reproduction."; "consider splitting genitalia from reproductive system"; ; "Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO]"; "Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG]"; ; , , , "AAO:0010258", "BILA:0000103", "BTO:0000081", "CALOHA:TS-1318", "EFO:0000809", "EHDAA2:0001603", "EHDAA:5923", "EMAPA:17381", "EV:0100100", "FBbt:00004857", "FMA:7160", "GAID:363", "HAO:0000374", "HAO:0000895", "MA:0000326", "MIAA:0000305", "NCIT:C12841", "OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA", "TAO:0000632", "UMLS:C1261210", "VHOG:0000182", "WBbt:0005747", "XAO:0000142", "ZFA:0000632"; "uberon"; "Geschlechtsorgan", "animal reproductive system", "genital system", "genital tract", "genitalia", "organa genitalia", "reproductive tissue", "reproductive tract", "systemata genitalia"; "UBERON:0000990"; , , , , ; rdfs:label "reproductive system"; . a owl:Class; rdfs:subClassOf ; "Functional system which consists of structures involved in respiration."; ; "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]"; "There is no doubt that the primitive pattern of vertebrate air-breathing is the buccal pulse pump found in actinopterygian fishes.[well established][VHOG]"; , , , "AAO:0000541", "BTO:0000203", "CALOHA:TS-1319", "EFO:0000804", "EHDAA2:0001604", "EHDAA:2203", "EMAPA:16727", "EV:0100036", "FMA:7158", "GAID:78", "MA:0000327", "MAT:0000030", "MESH:D012137", "MIAA:0000030", "NCIT:C12779", "OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA", "TAO:0000272", "UMLS:C0035237", "VHOG:0000202", "XAO:0000117", "ZFA:0000272"; "apparatus respiratorius", "respiratory system"; "uberon"; "Atmungssystem", "apparatus respiratorius", "systema respiratorium"; "UBERON:0001004"; , , , , ; rdfs:label "respiratory system"; . a owl:Class; rdfs:subClassOf ; "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes."; ; "An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO]"; "digestive"; "many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class"; , , "AAO:0000129", "BILA:0000082", "BTO:0000058", "CALOHA:TS-1293", "EFO:0000793", "EV:0100056", "FBbt:00005055", "FMA:7152", "GAID:278", "MA:0002431", "MAT:0000018", "MESH:D004064", "MIAA:0000018", "TADS:0000170", "TAO:0000339", "WBbt:0005748", "XAO:0000125", "ZFA:0000339", "galen:DigestiveSystem", "ncithesaurus:Digestive_System"; "uberon"; "alimentary system", "alimentary tract", "gastrointestinal system", "gut"; "UBERON:0001007"; , , , ; rdfs:label "digestive system" . a owl:Class; rdfs:subClassOf ; "The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products.."; "In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here"; ; "An anatomical system which consists of organs and tissues which produce, store, and excrete urine.[AAO]"; "Evolution of vertebrate renal anatomy appears quite conservative when compared, for example, to evolution of respiratory and cardiovascular systems in vertebrates. Major anatomical changes in vertebrates kidneys separate those of birds and mammals from kidneys of lower vertebrates. General increase in animal size from fish to mammals is reflected by an increase in total number of nephrons per kidney, rather than by constant change in tubular dimensions.[well established][VHOG]"; "In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels", "This definition is inclusive of the organs of the vertebrate renal system, as well as the Malpighian tubules of insects, and allows for future incorporation of structures such as the antennal glands of crustaceans"; , , , "AAO:0010257", "BILA:0000015", "BTO:0001244", "BTO:0003092", "CALOHA:TS-1323", "EFO:0000803", "EHDAA2:0001601", "EHDAA:5901", "EMAPA:17366", "EV:0100095", "FBbt:00005056", "FMA:7159", "GAID:391", "MA:0000325", "MAT:0000027", "MESH:D014551", "MIAA:0000027", "NCIT:C12413", "TADS:0000162", "TAO:0000163", "UMLS:C1508753", "VHOG:0000723", "WBbt:0005736", "XAO:0000143", "ZFA:0000163", "galen:UrinaryTract"; "excretory system", "renal system", "systema urinaria", "systema urinarium", "urinary system", "urinary tract"; "uberon"; "renal or urinary system", "renal/urinary system"; "UBERON:0001008"; , , , ; rdfs:label "renal system" . a owl:Class; rdfs:subClassOf ; "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]."; "the cardiovascular system and the lymphatic system are parts of the circulatory system"; ; ; "Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO]"; "We should divest ourselves of the view that earlier vertebrate groups were 'on their way' to becoming mammals, as clearly they were not such visionaries. Neither were their systems 'imperfect' as earlier anatomists thought. Instead, their circulatory systems served them well to address the ecological demands arising from their lifestyles.[well established][VHOG]"; , "AAO:0000959", "CALOHA:TS-2103", "FBbt:00005057", "OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA", "VHOG:0001248"; "uberon"; "systema cardiovasculare"; "UBERON:0001009"; ; rdfs:label "circulatory system"; . a owl:Class; rdfs:subClassOf ; "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]."; ; "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]", "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]"; "Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG]"; "nervous", "neural"; , , , , , "AAO:0000324", "BILA:0000079", "BTO:0001484", "CALOHA:TS-1313", "EFO:0000802", "EHDAA2:0001246", "EHDAA:826", "EMAPA:16469", "EV:0100162", "FBbt:00005093", "FMA:7157", "GAID:466", "MA:0000016", "MAT:0000026", "MESH:D009420", "MIAA:0000026", "NCIT:C12755", "OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA", "TAO:0000396", "UMLS:C0027763", "VHOG:0000402", "WBbt:0005735", "XAO:0000177", "ZFA:0000396"; "neurological system"; "nerve net"; "uberon"; "systema nervosum"; "UBERON:0001016"; , , , , ; rdfs:label "nervous system"; , . a owl:Class; rdfs:subClassOf , _:2609c4, _:2609d4; "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information."; ; "An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG]"; "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs"; , , "AAO:0000555", "BAMS:SEN", "BILA:0000099", "EFO:0000805", "EHDAA2:0003094", "EMAPA:16192", "FBbt:00007692", "FMA:75259", "MA:0002442", "MAT:0000031", "MIAA:0000031", "TAO:0000282", "VHOG:0001674", "XAO:0003194", "ZFA:0000282"; "organa sensuum", "sense organ subsystem", "sense organs", "sense organs set", "sensory subsystem", "sensory systems"; "uberon"; "organa sensuum", "sensory organ system", "set of sense organs"; "UBERON:0001032"; , , ; rdfs:label "sensory system"; . _:2609c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2609d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:2609e4 . _:2609e4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , ; "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)."; "Anterior end of the alimentary canal lined with smooth muscle. Bounded anteriorly by a constriction in the pharynx. Bounded posteriorly by and increase in circular and/or longitudinal smooth muscle associated with the stomach.[AAO]"; "The few structural specializations in (adult lampreys) pharynx include complex valves on the external gill openings that direct the tidal flow, and the division of the ancestral pharynx into an oesophagus and a respiratory pharynx.[well established][VHOG]"; "esophageal"; "esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995)"; , , , "AAO:0000145", "ANISEED:1235301", "BTO:0000959", "CALOHA:TS-0700", "EFO:0000835", "EHDAA2:0001285", "EHDAA:2937", "EMAPA:16833", "EV:0100069", "FMA:7131", "GAID:291", "MA:0000352", "MAT:0000048", "MESH:A03.365", "MIAA:0000048", "NCIT:C12389", "OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA", "TAO:0000204", "UMLS:C0014876", "VHOG:0000450", "XAO:0000127", "ZFA:0000204", "galen:Esophagus"; "gullet", "oesophagus"; "uberon"; "UBERON:0001043"; , , , , , ; rdfs:label "esophagus"; . _:260ed4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)."; , . _:260ee4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Anterior end of the alimentary canal lined with smooth muscle. Bounded anteriorly by a constriction in the pharynx. Bounded posteriorly by and increase in circular and/or longitudinal smooth muscle associated with the stomach.[AAO]"; "2012-06-20"; "AAO:0000145"; "AAO"; "AAO:EJS" . _:260ef4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The few structural specializations in (adult lampreys) pharynx include complex valves on the external gill openings that direct the tidal flow, and the division of the ancestral pharynx into an oesophagus and a respiratory pharynx.[well established][VHOG]"; "2012-09-17"; "VHOG:0000450"; "VHOG"; , "DOI:10.1111/j.1096-3642.1996.tb01658.x Mallatt J, Ventilation and the origin of jawed vertebrates: a new mouth. Zoological Journal of the Linnean Society (1996)" . _:261034 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995)"; "MA" . _:261154 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0014876"; "ncithesaurus:Esophagus" . a owl:Class; rdfs:subClassOf , _:261174, _:261184, _:261194; "the terminal portion of the intestinal tube, terminating with the anus"; "The terminal portion of the large intestine between the ileo-pelvic colon and the anus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "rectal"; "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html"; , , , "AAO:0010401", "BTO:0001158", "CALOHA:TS-1180", "EFO:0000848", "EHDAA2:0001592", "EHDAA:5836", "EMAPA:17896", "EV:0100081", "FMA:14544", "GAID:311", "MA:0000336", "MAT:0000050", "MESH:A03.492.411.495.767", "MIAA:0000050", "NCIT:C12390", "OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA", "UMLS:C0034896", "VHOG:0001751", "XAO:0000238", "galen:Rectum"; "terminal portion of intestine"; "uberon"; "intestinum rectum", "rectal sac", "terminal portion of large intestine"; "UBERON:0001052"; , , ; rdfs:label "rectum"; . _:261174 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261184 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261194 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2613e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "4"; "cjm" . _:2613f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget _:261404; "MA" . _:261404 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261414 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget _:261444; "ISBN10:0073040584" . _:261444 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261524 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "the terminal portion of the intestinal tube, terminating with the anus"; , "ISBN:0-683-40008-8", "MP:0000492" . _:261644 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The terminal portion of the large intestine between the ileo-pelvic colon and the anus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "2012-09-17"; "VHOG:0001751"; "VHOG"; . _:261654 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0034896"; "ncithesaurus:Rectum" . _:261724 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum rectum"; "BTO:0001158" . a owl:Class; rdfs:subClassOf ; "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species."; ; , , "AAO:0010841", "AEO:0000000", "BILA:0000000", "CARO:0000000", "EHDAA2:0002229", "FBbt:10000000", "FBbt_root:00000000", "FMA:62955", "HAO:0000000", "MA:0000001", "NCIT:C12219", "TAO:0100000", "TGMA:0001822", "UMLS:C1515976", "WBbt:0000100", "XAO:0000000", "ZFA:0100000"; "uberon"; "UBERON:0001062"; ; rdfs:label "anatomical entity" . a owl:Class; rdfs:subClassOf , ; "Joint fluid is a transudate of plasma that is actively secreted by synovial cells."; ; "Portion of organism substance that is a clear fluid that occupies the space in synovial joints.[TAO]"; "It provides nutrients and lubrication for articular cartilage"; "The fluid contains hyaluronan secreted by fibroblast-like cells in the synovial membrane, lubricin (proteoglycan 4; PRG4) secreted by the surface chondrocytes of the articular cartilage and interstitial fluid filtered from the blood plasma"; , , "BTO:0001339", "CALOHA:TS-0996", "ENVO:02000039", "FMA:12277", "GAID:265", "MA:0002544", "MESH:D013582", "NCIT:C33718", "TAO:0005154", "UMLS:C0039097", "ZFA:0005154", "galen:SynovialFluid"; "joint fluid"; "uberon"; "UBERON:0001090"; , ; rdfs:label "synovial fluid" . a owl:Class; rdfs:subClassOf , _:261bc4; "A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction."; "caecal"; "A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates."; , , , "BTO:0000166", "CALOHA:TS-0122", "EFO:0000850", "EHDAA2:0000206", "EHDAA:3913", "EMAPA:35197", "EV:0100397", "FMA:14541", "GAID:307", "MA:0000334", "MESH:A03.492.411.495.209", "MIAA:0000288", "NCIT:C12381", "OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA", "UMLS:C0007531", "VHOG:0001559", "galen:Cecum"; "caecum", "cecum", "intestinum crassum caecum"; "caeca", "ceca"; "uberon"; "blind intestine", "blindgut", "intestinum caecum", "intestinum crassum cecum"; "UBERON:0001153"; , , ; rdfs:comment "Kardong: in some herbivorous lizards, a cecum is present between small and large intestines"; rdfs:label "caecum"; . _:261bc4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261cc4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget _:261d54; "EHDAA2" . _:261d54 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261ec4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction."; . _:261ed4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates."; "WP" . _:261ee4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0007531"; "ncithesaurus:Cecum" . _:261ef4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "caecum"; "VHOG:0001559" . _:261f04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "cecum"; "FMA:14541" . _:261f14 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "caeca"; "NCBITaxon:8782"; . _:261f24 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "ceca"; "NCBITaxon:8782"; . _:261f34 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "blind intestine"; "BTO:0000166" . _:261f44 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "blindgut"; "BTO:0000166" . _:261f54 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum caecum"; "BTO:0000166" . _:261f64 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum crassum cecum"; "BTO:0000166" . a owl:Class; rdfs:subClassOf , _:261f74, _:261f84; "Last portion of the large intestine before it becomes the rectum."; "TODO - abstract this such that it legitimately covers all vertebrates"; "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]", "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]"; "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]"; "colonic"; "In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]", "In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN]"; "it extracts water and salt from solid wastes before they are eliminated from the body[WP]"; , , , "AAO:0010400", "BTO:0000269", "CALOHA:TS-0158", "EFO:0000361", "EMAPA:18939", "EV:0100079", "FMA:14543", "GAID:309", "MA:0000335", "MAP:0000001", "MAT:0000526", "MESH:A03.492.411.495.356", "NCIT:C12382", "OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA", "TAO:0000706", "UMLS:C0009368", "VHOG:0000648", "XAO:0000243", "ZFA:0000706", "galen:Colon"; "large bowel"; "posterior intestine"; "uberon"; "hindgut"; "UBERON:0001155"; , , , ; rdfs:label "colon" . _:261f74 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:261f84 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2621d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "3"; "cjm" . _:2621e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget _:2621f4; "FMA" . _:2621f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:262204 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Last portion of the large intestine before it becomes the rectum."; , , "ZFIN:curator" . _:262214 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]"; "2012-06-20"; "AAO:0010400"; "AAO"; "UBERON:0001155" . _:262224 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]"; "2012-08-14"; "TAO:0000706"; "TAO"; "ZFIN:curator" . _:262234 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]"; "2012-09-17"; "VHOG:0000648"; "VHOG"; , "ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11" . _:262244 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0009368"; "ncithesaurus:Colon" . a owl:Class; rdfs:subClassOf , ; "A complex network of conduits that begins with the canals of Hering (intralobar bile duct) and progressively merges into a system of interlobular, septal, and major ducts which then coalesce to form the extrahepatic bile ducts, which finally deliver bile to the intestine, and in some species to the gallbladder."; ; "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]"; , , , "AAO:0011020", "EMAPA:35172", "FMA:14665", "UMLS:C0005423", "XAO:0000455"; "uberon"; "biliary tract"; "UBERON:0001173"; , , ; rdfs:comment "The path in many species is as follows: Bile canaliculi -> Canals of Hering (intralobar bile duct) -> interlobular bile ducts -> intrahepatic bile ducts -> left and right hepatic ducts merge to form -> common hepatic duct *exits liver* and joins -> cystic duct (from gall bladder) forming -> common bile duct -> joins with pancreatic duct -> forming ampulla of Vater -> enters duodenum [WP]"; rdfs:label "biliary tree" . a owl:Class; rdfs:subClassOf ; "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]."; ; "Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO]"; "In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG]"; "pancreatic"; "As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] Hagfishes and lampreys are unique in the complete separation of their endocrine pancreas (islet or- gan) and their exocrine pancreas (50). The endocrine and exocrine pancreas are coassociated in crown gnathostomes (50). In Branchiostoma and Ciona, there is no diverticulum as there is in hagfishes, lampreys, and gnathostomes, only dispersed insulin-secreting cells in the walls of the gastrointestinal tract (51, 52)", "The zebrafish does not have a discrete pancreas. Exocrine pancreatic tissue can be found scattered along the intestinal tract. The acinar structure of the exocrine pancreas is very similar to that of mammals and comprises cells with a very dark, basophilic cytoplasm"; "The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1-2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans"; , , , "AAO:0010112", "BTO:0000988", "CALOHA:TS-0736", "EFO:0000855", "EHDAA2:0001367", "EHDAA:6893", "EMAPA:17503", "EV:0100092", "FMA:7198", "GAID:334", "MA:0000120", "MAT:0000075", "MESH:D010179", "MIAA:0000075", "NCIT:C12393", "OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA", "TAO:0000140", "UMLS:C0030274", "VHOG:0000050", "XAO:0000136", "ZFA:0000140", "galen:Pancreas"; "uberon"; "UBERON:0001264"; , , , , , ; rdfs:label "pancreas"; . a owl:Class; rdfs:subClassOf ; "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]."; ; "check ncita"; , , , "EMAPA:37621", "FMA:34836", "GAID:263", "MA:0001519", "MESH:D017746", "NCIT:C32259", "NCIT:C84388", "UMLS:C0206207", "galen:JointCapsule"; "capsula articularis", "fibrous capsule of joint", "joint capsule", "joint fibrous capsule"; "uberon"; "capsulae articulares"; "UBERON:0001484"; , ; rdfs:label "articular capsule"; , . a owl:Class; rdfs:subClassOf , , _:262544; "A specialized accessory gland of the skin of mammals that secretes milk. The gland is typically only developed in females, and regresses in males."; "Originally this was classified as a female reproductive structure, as it was in the MP in 2011"; ; "Any of the milk-producing apocrine glands typically occurring in pairs in female mammals and consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat. [TFD][VHOG]"; "The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG]"; "mammary"; "A mouse mammary gland contains a single duct or sinus, forming 5-10 secondary ducts", "The male Dayak fruit bat has lactating mammary glands", "The mammary glands of humans are in the thoracid/breast region. In other mammals they may be located elsewhere on the mammary ridges."; "The BTO class represents the combination of nipple plus lobe", "The FMA class represents an individule lobe. The nipple is not a part", "The MA class represents a composite structure, including the nipple, fat, connective tissue, smooth muscle as parts"; , , , "BTO:0000817", "CALOHA:TS-0595", "EFO:0000854", "EMAPA:17759", "EV:0100125", "FMA:286452", "MA:0000145", "MAT:0000073", "MESH:D008321", "MIAA:0000073", "NCIT:C12367", "OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA", "UMLS:C0929301", "VHOG:0000398"; "glandula mammaria", "lactiferous gland"; "lobe of breast", "milk patch"; "uberon"; "Brustdruese", "dug", "glandula mammaria", "lobe of mammary gland", "mamma", "mammae"; "UBERON:0001911"; , , , ; rdfs:label "mammary gland"; . _:262544 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , ; "An emulsion of fat globules within a fluid that is secreted by the mammary gland during lactation."; "to axiomatize the different forms of mammary gland secretion an ontology of the phases of pregnancy/lactation is required. Using the existing GO def of lactation is circular."; ; "The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG]"; "ncit:Milk refers specifically to cow milk"; , , "BTO:0000868", "CALOHA:TS-0636", "EMAPA:36540", "ENVO:02000031", "EV:0100126", "FMA:62100", "GAID:1230", "MA:0002552", "MAT:0000056", "MESH:A13.622", "MIAA:0000056", "NCIT:C13401", "OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA", "UMLS:C1511310", "VHOG:0001263", "galen:Milk"; "mammary gland milk"; "uberon"; "UBERON:0001913"; , ; rdfs:label "milk" . a owl:Class; rdfs:subClassOf , _:2628f4; "The liquid component of blood, in which erythrocytes are suspended."; ; "plasma", "portion of plasma"; , , "BTO:0000131", "CALOHA:TS-0800", "EFO:0001905", "EMAPA:35690", "FMA:62970", "GAID:1178", "MA:0002501", "MAT:0000052", "MESH:D010949", "MIAA:0000052", "NCIT:C13356", "OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw", "UMLS:C0032105"; "blood plasm", "portion of blood plasma"; "uberon"; "UBERON:0001969"; , , ; rdfs:label "blood plasma" . _:2628f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:262a14; rdfs:subClassOf , , _:262a54; "vital aqueous secretion of the liver that is formed by hepatocytes and modified down stream by absorptive and secretory properties of the bile duct epithelium."; ; "In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum."; "aids the process of digestion of lipids in the small intestine", "bile salts function to emulsify dietary fats and facilitate their intestinal absorption", "elimination of cholesterol", "major excretory route for potentially harmful exogenous lipophilic substances", "many hormones and pheromones are excreted in bile, and contribute to growth and development of the intestine in some species and provide attractants for the weaning of non-human vertebrates", "protects the organism from enteric infections by excreting immune globulin A (IgA), inflammatory cytokines, and stimulating the innate immune system in the intestine"; , , "BTO:0000121", "CALOHA:TS-1172", "ENVO:02000023", "FMA:62971", "GAID:1157", "MA:0002513", "MESH:D001646", "NCIT:C13192", "UMLS:C0005388", "ZFA:0005857", "galen:Bile"; "uberon"; "fel", "gall"; "UBERON:0001970"; , ; rdfs:label "bile" . _:262a14 a owl:Class; owl:intersectionOf _:262a24 . _:262a24 rdf:first ; rdf:rest _:262a44 . _:262a44 rdf:first _:262a34; rdf:rest rdf:nil . _:262a34 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:262a54 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , , _:262c64; "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell."; ; "Phylogenetic analyses of the concatenated data set using maximum parsimony, maximum likelihood and distance based (neighbour joining) methods all converged on a nearly identical, well supported topology defining four principal eutherian lineages. The results affirm monophyly of traditional placental orders (except Artiodactyla and Insectivora), and also support some previously proposed, as well as new, superordinal clades.[well established][VHOG]"; "placental"; "Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 (Vertebrates, Kardong)]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: http://dx.doi.org/10.1002/jmor.11011"; , , , "BTO:0001078", "CALOHA:TS-0799", "EFO:0001407", "EMAPA:35689", "EV:0100119", "FMA:63934", "GAID:379", "MA:0000386", "MAT:0000279", "MESH:A16.759", "MIAA:0000279", "NCIT:C13272", "OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA", "UMLS:C0032043", "VHOG:0001266"; "allantoic placenta", "eutherian placenta"; "uberon"; "UBERON:0001987"; , , , ; rdfs:comment "Marsupials possess only a rudimentary yolk-type placenta, with reduced nutrient and oxygen exchanging capabilities."; rdfs:label "placenta"; , . _:262c64 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Portion of semisolid bodily waste discharged through the anus[MW,modified]"; ; "Excretion in semisolid state processed by the intestine.[FMA]"; "fecal"; "excreta"; , , "BTO:0000440", "CALOHA:TS-2345", "ENVO:00002003", "FMA:64183", "GAID:1199", "MA:0002509", "MAT:0000053", "MESH:D005243", "MIAA:0000053", "NCIT:C13234", "OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA", "UMLS:C0015733", "galen:Feces"; "faeces", "fecal material", "fecal matter", "matières fécales@fr", "merde@fr", "partie de la merde@fr", "piece of shit", "porción de mierda@es", "portion of excrement", "portion of faeces", "portion of fecal material", "portion of fecal matter", "portion of feces", "portionem cacas", "stool", "teil der fäkalien@de"; "cow dung", "cow pat", "dung", "fewmet", "frass", "guano", "portion of dung", "portion of guano", "portion of scat", "scat", "spraint"; "uberon"; "droppings", "excrement", "ordure", "spoor"; "UBERON:0001988"; , ; rdfs:label "feces" . a owl:Class; rdfs:subClassOf , , , , _:262e94 . _:262e94 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . rdfs:subClassOf _:262ea4, _:262eb4; "Respiration organ that develops as an oupocketing of the esophagus."; ; "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air.[AAO]"; "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG]"; "pulmonary"; "respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi"; , , , "AAO:0000275", "AAO:0010567", "BTO:0000763", "CALOHA:TS-0568", "EFO:0000934", "EHDAA2:0001042", "EHDAA:1554", "EHDAA:2205", "EMAPA:16728", "EV:0100042", "FMA:7195", "GAID:345", "MA:0000415", "MAT:0000135", "MESH:D008168", "MIAA:0000135", "NCIT:C12468", "OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA", "UMLS:C0024109", "VHOG:0000310", "XAO:0000119", "galen:Lung"; "pulmo"; "uberon"; "UBERON:0002048"; , , , , ; rdfs:comment "Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]"; rdfs:label "lung"; rdfs:seeAlso . _:262ea4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:262eb4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:263134; rdfs:subClassOf , _:263174; "Anatomical structure that is part of an embryo."; ; "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO]", "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO]", "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO]"; "in FMA embryo is_a embryonic structure"; , , "AAO:0000138", "BILA:0000034", "BTO:0000174", "CALOHA:TS-2110", "EFO:0000461", "FBbt:00004208", "FMA:69067", "GAID:407", "MESH:D004628", "NCIT:C13229", "RETIRED_EHDAA2:0003169", "TAO:0001105", "UMLS:C0013948", "VSAO:0000178", "XAO:0003042", "ZFA:0001105"; "developing embryonic structure", "embryonic anatomical structure"; "uberon"; "developing structure", "embryonale Struktur", "embryonic structures"; "UBERON:0002050"; , , ; rdfs:label "embryonic structure" . _:263134 a owl:Class; owl:intersectionOf _:263144 . _:263144 rdf:first ; rdf:rest _:263164 . _:263164 rdf:first _:263154; rdf:rest rdf:nil . _:263154 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:263174 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen."; ; "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]"; "general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs."; , , , "AAO:0010386", "BTO:0001491", "EHDAA:512", "EMAPA:16245", "FMA:7085", "MA:0000019", "MESH:D014781", "NCIT:C28287", "RETIRED_EHDAA2:0002201", "UMLS:C0042779", "XAO:0003034"; "visceral organ", "visceral organ system"; "uberon"; "Organsystem@de", "splanchnic tissue", "viscera", "visceral tissue"; "UBERON:0002075"; , , , ; rdfs:label "viscus" . a owl:Class; rdfs:subClassOf , ; "The organ covering the body that consists of the dermis and epidermis."; "consider 'integumentary system' for invertebrates"; ; "MA uses the term skin to refer to what is called here: zone of skin"; , , , "BTO:0001253", "CALOHA:TS-0934", "EFO:0000962", "EHDAA2:0001844", "EMAPA:17525", "FMA:7163", "MESH:D012867", "MFMO:0000099", "NCIT:C12470", "OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA", "UMLS:C1123023", "XAO:0000023", "galen:Skin"; "entire skin", "skin organ"; "uberon"; "entire integument", "integument", "integumental organ", "pelt", "skin"; "UBERON:0002097"; , , , ; rdfs:label "skin of body"; . a owl:Class; rdfs:subClassOf ; "Sensory system responsible for the perception of spatial orientation and auditory stimuli."; ; "The sensory system used for balance and hearing.[AAO]"; "AAO:0000631", "EMAPA:36002", "EMAPA:37985", "FMA:78500", "TAO:0001138", "XAO:0003195", "ZFA:0001138"; "auditory organ system", "vestibuloauditory system"; "uberon"; "auditory system", "auditory/vestibular system", "vestibuloauditory system"; "UBERON:0002105"; , , , ; rdfs:label "vestibulo-auditory system"; . a owl:Class; rdfs:subClassOf , , , , _:263964, _:263984; "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]."; ; "Organ which secretes bile and participates in formation of certain blood proteins.[AAO]"; "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]"; "All vertebrates possess a liver (reference 1); Later in craniate evolution, an anterior gill arch was transformed into jaws, and many new types of feeding subsequently evolved.(...) A liver evolved that, among its many functions, stores considerable energy as glycogen or lipid (reference 2).[well established][VHOG]"; "hepatic"; "An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver. The zebrafish liver differs from the mammalian liver in that the hepatocytes are not clearly organized in cords or lobules and the typical portal triads are not apparent. In addition, the zebrafish liver does not have Kuppfer cells. Furthermore, a clear distinction can be made between the male and female liver in the adult zebrafish. The female hepatocytes are very basophilic (Figure 15c) as a result of the production of vitellogenin (Van der Ven et al. 2003).", "The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates."; "secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]."; "Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function."; , , , "AAO:0010111", "BTO:0000759", "CALOHA:TS-0564", "EFO:0000887", "EHDAA2:0000997", "EHDAA:2197", "EMAPA:16846", "EV:0100089", "FMA:7197", "GAID:288", "MA:0000358", "MAT:0000097", "MESH:D008099", "MIAA:0000097", "NCIT:C12392", "OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA", "TAO:0000123", "UMLS:C0023884", "VHOG:0000257", "XAO:0000133", "ZFA:0000123", "galen:Liver"; "uberon"; "iecur", "jecur"; "UBERON:0002107"; , , , , , ; rdfs:label "liver"; . _:263964 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:263974 . _:263974 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:263984 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , _:263c84, _:263c94; "Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]."; "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]"; "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]"; , , , "AAO:0010397", "BTO:0000651", "CALOHA:TS-0942", "EFO:0000841", "EMAPA:32834", "EV:0100072", "FMA:7200", "GAID:313", "MA:0000337", "MAT:0000047", "MESH:A03.492.411.620", "MIAA:0000047", "NCIT:C12386", "OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA", "TAO:0001323", "UMLS:C0021852", "VHOG:0000055", "XAO:0000130", "ZFA:0001323", "galen:SmallIntestine"; "small bowel", "small intestine"; "uberon"; "anterior intestine", "intestinum tenue", "mid intestine"; "UBERON:0002108"; , , , , , ; rdfs:label "small intestine"; . _:263c84 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:263c94 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:263cc4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "2"; "cjm" . _:263cd4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]."; , "ISBN10:0073040584" . _:263ce4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]"; "2012-08-14"; "TAO:0001323"; "TAO"; "ZFIN:curator" . _:263cf4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]"; "2012-09-17"; "VHOG:0000055"; "VHOG"; , "ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566" . _:263d04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0021852"; "ncithesaurus:Small_Intestine" . _:263d34 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum tenue"; ; . _:263fe4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum tenue"; "BTO:0000651" . a owl:Class; rdfs:subClassOf , _:263ff4, _:264004, _:264014; "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)."; "The fixed portion of the small intestine deeply lodged in the posterior wall of the abdomen and extending from the pylorus to the beginning of the jejunum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "duodenal"; "In fish, the divisions of the small intestine are not as clear, and the terms anterior intestine or proximal intestine may be used instead of duodenum.", "In humans, the duodenum is a hollow jointed tube about 10-15 inches (25-38 centimetres) long connecting the stomach to the jejunum. It begins with the duodenal bulb and ends at the ligament of Treitz."; , , , "AAO:0010402", "BTO:0000365", "CALOHA:TS-0214", "EFO:0000851", "EMAPA:18852", "EV:0100073", "FMA:7206", "GAID:284", "MA:0000338", "MAT:0000044", "MESH:A03.492.411.620.270", "MIAA:0000044", "NCIT:C12263", "OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA", "UMLS:C0013303", "VHOG:0000052", "XAO:0000236", "galen:Duodenum"; "uberon"; "proximal intestine", "upper intestine"; "UBERON:0002114"; , , , ; rdfs:label "duodenum"; . _:263ff4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:264004 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:264014 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:264024 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "3"; "cjm" . _:264034 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)."; , "ISBN:0815318960" . _:264084 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The fixed portion of the small intestine deeply lodged in the posterior wall of the abdomen and extending from the pylorus to the beginning of the jejunum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "2012-09-17"; "VHOG:0000052"; "VHOG"; . _:264174 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "In fish, the divisions of the small intestine are not as clear, and the terms anterior intestine or proximal intestine may be used instead of duodenum."; "NCBITaxon:32443"; . _:264214 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "In humans, the duodenum is a hollow jointed tube about 10-15 inches (25-38 centimetres) long connecting the stomach to the jejunum. It begins with the duodenal bulb and ends at the ligament of Treitz."; "NCBITaxon:9606"; . _:2642d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0013303"; "ncithesaurus:Duodenum" . _:2642e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "proximal intestine"; "BTO:0000365" . _:2642f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "upper intestine"; "BTO:0000365" . a owl:Class; rdfs:subClassOf , _:264304, _:264314; "the portion of the small intestine that extends from the duodenum to the ileum"; "TODO consider ZFA:0001323 mid intestine, see also small intestine"; "The first two fifth of the small intestine beyond the duodenum. It extends from the end of the duodenum to the ileum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "jejunal"; "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum.[Wikipedia:Jejunum]"; , , , "BTO:0000657", "CALOHA:TS-0496", "EFO:0001333", "EMAPA:18666", "EV:0100074", "FMA:7207", "GAID:318", "MA:0000340", "MAT:0000045", "MESH:A03.492.411.620.625", "MIAA:0000045", "NCIT:C12388", "OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA", "UMLS:C0022378", "VHOG:0000053", "galen:Jejunum"; "uberon"; "intestinum jejunum", "mid-intestine", "middle intestine"; "UBERON:0002115"; , , ; rdfs:label "jejunum"; . _:264304 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:264314 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:264324 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "3"; "cjm" . _:2643a4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "the portion of the small intestine that extends from the duodenum to the ileum"; "MGI:monikat", "MP:0004002" . _:264574 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The first two fifth of the small intestine beyond the duodenum. It extends from the end of the duodenum to the ileum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]"; "2012-09-17"; "VHOG:0000053"; "VHOG"; . _:264584 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0022378"; "ncithesaurus:Jejunum" . _:264594 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum jejunum"; "BTO:0000657" . _:2645a4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "mid-intestine"; . _:2645b4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "middle intestine"; "BTO:0000657" . a owl:Class; rdfs:subClassOf , _:2645c4, _:2645d4; "the portion of the small intestine that extends from the jejunum to the colon"; "TODO consider ZFA:0000706 posterior intestine, see also colon"; "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]"; "ileal"; "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum.[Wikipedia:Ileum]"; , , , "AAO:0010403", "BTO:0000620", "CALOHA:TS-0472", "EFO:0001334", "EMAPA:32764", "EV:0100075", "FMA:7208", "GAID:315", "MA:0000339", "MAT:0000282", "MESH:A03.492.411.620.484", "MIAA:0000282", "NCIT:C12387", "OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA", "UMLS:C0020885", "VHOG:0000647", "XAO:0000237", "galen:Ileum"; "uberon"; "distal intestine", "intestinum ileum", "lower intestine", "posterior intestine"; "UBERON:0002116"; , , ; rdfs:label "ileum"; . _:2645c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2645d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:264884 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf; owl:annotatedTarget ; "3"; "cjm" . _:264894 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "the portion of the small intestine that extends from the jejunum to the colon"; "ISBN:0-683-40008-8", "MGI:csmith", "MP:0002581" . _:2648a4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]"; "2012-09-17"; "VHOG:0000647"; "VHOG"; , "ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11" . _:2648b4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "UMLS:C0020885"; "ncithesaurus:Ileum" . _:2648c4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "distal intestine"; "BTO:0000620" . _:2648d4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "intestinum ileum"; "BTO:0000620" . _:2648e4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "lower intestine"; "BTO:0000620" . _:2648f4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "posterior intestine"; . a owl:Class; owl:equivalentClass _:264904; rdfs:subClassOf , _:2650a4; "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]"; ; "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]"; "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI; , , , "EHDAA2:0001730", "EHDAA:4969", "EMAPA:17661", "FMA:7309", "MA:0000426", "NCIT:C33483", "OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA", "UMLS:C0225706", "VHOG:0000301"; "uberon"; "UBERON:0002167"; , ; rdfs:label "right lung"; . _:264904 a owl:Class; owl:intersectionOf _:264914 . _:264914 rdf:first ; rdf:rest _:264934 . _:264934 rdf:first _:264924; rdf:rest rdf:nil . _:264924 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2650a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:265374; rdfs:subClassOf , _:2653b4; "Lung which consists of the left upper lobe and left lower lobe.[FMA]"; ; "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]"; "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^xsd:anyURI; , , , "EHDAA2:0000943", "EHDAA:4947", "EMAPA:17653", "FMA:7310", "MA:0000425", "NCIT:C32967", "OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA", "UMLS:C0225730", "VHOG:0000618"; "uberon"; "UBERON:0002168"; , ; rdfs:label "left lung"; . _:265374 a owl:Class; owl:intersectionOf _:265384 . _:265384 rdf:first ; rdf:rest _:2653a4 . _:2653a4 rdf:first _:265394; rdf:rest rdf:nil . _:265394 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2653b4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs."; ; "CALOHA:TS-2018", "EHDAA2:0004615", "EMAPA:18765", "FMA:74562", "MA:0000013"; "hematolymphoid system", "lymphomyeloid complex"; "uberon"; "haemolymphoid system"; "UBERON:0002193"; rdfs:label "hemolymphoid system" . a owl:Class; rdfs:subClassOf ; "Anatomical system that consists of the muscular and skeletal systems."; ; "Anatomical system that provides locomotion and physical support to the organism.[AAO]"; "There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG]"; "musculoskeletal"; ; , , , "AAO:0010546", "CALOHA:TS-1311", "EMAPA:32714", "EV:0100139", "FMA:7482", "GAID:98", "MA:0002418", "MESH:D009141", "NCIT:C12754", "OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g", "UMLS:C0026860", "VHOG:0001275", "VSAO:0000031", "XAO:0000168"; "musculo-skeletal system"; "uberon"; "UBERON:0002204"; ; rdfs:label "musculoskeletal system" . a owl:Class; rdfs:subClassOf ; "An organ that houses olfactory neurons and is responsible for the sense of smell. Examples include the vertebrate nose and the Drosophila dorsal organ."; "An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint"; ; "fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint"; "AAO:0010180", "BTO:0001772", "FBbt:00005158", "FMA:77659", "VHOG:0000287", "XAO:0000273"; "olfactory organ", "olfactory sense organ", "olfactory sensory organ"; "main olfactory organ", "primary olfactory organ"; "uberon"; "olfactory neuroepithelium", "organ olfactus", "organum olfactorium"; "UBERON:0002268"; ; rdfs:label "olfactory organ" . a owl:Class; rdfs:subClassOf , _:2653c4; "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]."; ; , , "CALOHA:TS-2057", "EHDAA2:0002225", "EMAPA:35329", "FMA:85539", "MA:0002411", "NCIT:C12957", "UMLS:C1516995", "WikipediaCategory:Exocrine_system"; "exocrine glandular system"; "uberon"; "UBERON:0002330"; , ; rdfs:label "exocrine system" . _:2653c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:265684; rdfs:subClassOf , _:2656c4; "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas"; "Currently this is logically defined by the system it belongs to, but a better system may be base this on presence/absence of ducts. However, the dual nature of the liver should be taken into consideration here. Consider adding subclasses"; ; , , , "AEO:0000097", "BTO:0000765", "CALOHA:TS-2012", "EHDAA2:0003097", "EMAPA:35327", "FMA:9596", "GAID:34", "MA:0002564", "MESH:D005088", "NCIT:C12712", "UMLS:C0015282"; "ducted gland", "glandula exocrina"; "uberon"; "UBERON:0002365"; , , ; rdfs:label "exocrine gland" . _:265684 a owl:Class; owl:intersectionOf _:265694 . _:265694 rdf:first ; rdf:rest _:2656b4 . _:2656b4 rdf:first _:2656a4; rdf:rest rdf:nil . _:2656a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2656c4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:2656d4; rdfs:subClassOf , _:265714; "Endocrine glands are glands of the endocrine system that secrete their products directly into the circulatory system rather than through a duct.[WP, modified]."; ; , , , "AEO:0000098", "BTO:0001488", "CALOHA:TS-1300", "EHDAA2:0003098", "EMAPA:35999", "FMA:9602", "GAID:335", "MA:0002563", "MESH:D004702", "NCIT:C12704", "OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA", "UMLS:C0014133"; "ductless gland", "glandula endocrina"; "uberon"; "ductless gland", "glandulae endocrinae"; "UBERON:0002368"; , , ; rdfs:label "endocrine gland"; . _:2656d4 a owl:Class; owl:intersectionOf _:2656e4 . _:2656e4 rdf:first ; rdf:rest _:265704 . _:265704 rdf:first _:2656f4; rdf:rest rdf:nil . _:2656f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:265714 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , _:2659f4; "Anatomical system that is involved in the production of hematopoietic cells."; ; "Anatomical system that consists of the blood and blood forming tissues.[AAO]"; "Zebrafish developmental hematopoiesis shows close correspondence to the development of the mammalian hematopoietic system and is regulated by conserved molecular pathways.[well established][VHOG]"; "hematopoietic"; "In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes"; , , , "AAO:0011002", "BTO:0000570", "CALOHA:TS-0449", "EFO:0000798", "EMAPA:35402", "EV:0100045", "FMA:9667", "GAID:1008", "MA:0002434", "MAT:0000022", "MESH:D006413", "MIAA:0000022", "NCIT:C12909", "TAO:0005023", "UMLS:C0018957", "VHOG:0001624", "XAO:0000122", "ZFA:0005023"; "haematological system", "haemopoietic system", "organa haemopoietica"; "uberon"; "Blutbildungssystem", "haematopoietic system", "hematological system", "hematolymphoid system", "hemopoietic system"; "UBERON:0002390"; , , , ; rdfs:label "hematopoietic system" . _:2659f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:265a04, _:265a14; "Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system through lymph capillaries[WP]."; ; , , "BTO:0000855", "CALOHA:TS-0580", "EFO:0000871", "ENVO:02000041", "EV:0100049", "FMA:9671", "GAID:1186", "MA:0002520", "MAT:0000055", "MESH:A12.207.630", "MIAA:0000055", "NCIT:C13252", "OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA", "UMLS:C0024202", "VHOG:0001590", "ZFA:0005658", "galen:Lymph"; "uberon"; "lympha"; "UBERON:0002391"; , , ; rdfs:label "lymph"; . _:265a04 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:265a14 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:265a24; "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies."; ; "The antibody-based immune system defined by the presence of the major histocompatibility complex (MHC), T cell receptor (TCR), B cell receptor (BCR) or recombination activating genes (RAGs) is known beginning from jawed fishes.[well established][VHOG]"; , , , "AAO:0011003", "BILA:0000104", "BTO:0005810", "FMA:9825", "GAID:328", "MA:0002711", "MESH:D007107", "NCIT:C12735", "OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA", "TAO:0001159", "UMLS:C0020962", "VHOG:0001247" . _:265a24 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . "XAO:0003152", "ZFA:0001159"; "uberon"; "UBERON:0002405"; , , ; rdfs:label "immune system" . a owl:Class; rdfs:subClassOf , _:265ca4; "Connected anatomical system that forms a barrier between an animal and its environment. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle."; ; "(...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG]"; , ; "UBERON:0007029"; , , , "AEO:0000154", "BILA:0000118", "CALOHA:TS-1299", "CARO:0002001", "EFO:0000807", "EHDAA2:0000836", "EHDAA2_RETIRED:0003154", "EHDAA:6520", "EMAPA:17524", "EV:0100151", "FBbt:00004969", "FMA:72979", "HAO:0000421", "MA:0000014", "MAT:0000033", "MESH:D034582", "MIAA:0000033", "NCIT:C12907", "TADS:0000108", "UMLS:C0037267", "VHOG:0000403", "XAO:0000176", "galen:Surface"; "integumentary system"; "uberon"; "body surface", "dermal system", "external covering of organism", "integumentum commune", "organism surface", "surface"; "UBERON:0002416"; , , ; rdfs:label "integumental system" . _:265ca4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:265cb4, _:265dd4; "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system[WP]."; ; "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]"; "Tetrapods have evolved distinct lymphatic systems, in which lymphatic capillaries help drain most of the tissues of the body.[well established][VHOG]"; "lymphoid"; "The lymphatic system of anuran amphibians is characterized by large lymphatic sacs and two pairs of lymph hearts that return lymph into the venous circulation but no lymph vessels per se [10.1152/japplphysiol.00201.2013]", "The lymphatic systems of reptiles and some birds have lymph hearts, and both groups have extensive lymph vessels, but their functional role in both lymph movement and plasma volume homeostasis is almost completely unknown [10.1152/japplphysiol.00201.2013]"; "We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments."; "UBERON:0002096"; , , , "EHDAA2:0001043", "EHDAA:8677", "EMAPA:37664", "FMA:74594", "GAID:931", "MA:0002435", "MAT:0000197", "MIAA:0000197", "NCIT:C12746", "OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA", "TAO:0000385", "UMLS:C0024235", "VHOG:0000842", "XAO:0003199", "ZFA:0000385"; "lymphatic system"; "uberon"; "lymphatic circulatory system", "lymphatic drainage system", "systema lymphoideum"; "UBERON:0002465"; , ; rdfs:label "lymphoid system"; . _:265cb4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:265dd4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:266124; "an organ that functions as a secretory or excretory organ"; ; "glandular"; "UBERON:MIAA_0000021"; , , , "AAO:0000212", "AEO:0000096", "BTO:0000522", "EFO:0000797", "EHDAA2:0003096", "EHDAA:2161", "EHDAA:4475", "EHDAA:6522", "EMAPA:18425", "FBbt:00100317", "FMA:7146", "FMA:86294", "HAO:0000375", "MA:0003038", "MAT:0000021", "MIAA:0000021", "NCIT:C13319", "OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA", "UMLS:C1285092", "WikipediaCategory:Glands", "galen:Gland"; "glandular organ"; "uberon"; "Druese", "glandula"; "UBERON:0002530"; , , ; rdfs:label "gland"; . _:266124 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types."; "this class was introduced for consistency with CARO. However, in this ontology we typically classify organs directly under 'organ' rather than subdividing into compound and simple organs"; ; "AAO:0010015", "AEO:0000024", "BILA:0000024", "CARO:0000024", "EHDAA2:0003024", "HAO:0000024", "TADS:0000598", "TAO:0000496", "TGMA:0001837", "VHOG:0001723", "XAO:0003041", "ZFA:0000496"; "uberon"; "organ"; "UBERON:0003103"; , ; rdfs:label "compound organ" . a owl:Class; rdfs:subClassOf , ; "An organ involved in reproduction"; ; "GO uses genitalia for the singular organ"; , , "EMAPA:17381", "EMAPA:37731", "MA:0001752", "MESH:D005835", "NCIT:C25177", "OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA", "TGMA:0000591", "UMLS:C0017420", "WBbt:0008422"; "genital organ", "reproductive system organ", "sex organ"; "uberon"; "genitalia"; "UBERON:0003133"; , , ; rdfs:label "reproductive organ" . a owl:Class; rdfs:subClassOf ; "A gland that is part of a foregut [Automatically generated definition]."; ; "EHDAA2:0000567", "EHDAA:950", "EMAPA:16557", "VHOG:0000650"; "foregut gland"; "uberon"; "UBERON:0003294"; rdfs:label "gland of foregut" . a owl:Class; owl:equivalentClass _:267834; rdfs:subClassOf , _:267874; "A gland that is part of a integumental system [Automatically generated definition]."; ; "EHDAA2:0000837", "EHDAA:6522", "EMAPA:17758", "MA:0000144", "VHOG:0000654"; "integumental gland", "integumental system gland", "integumentary gland"; "uberon"; "UBERON:0003297"; rdfs:label "gland of integumental system" . _:267834 a owl:Class; owl:intersectionOf _:267844 . _:267844 rdf:first ; rdf:rest _:267864 . _:267864 rdf:first _:267854; rdf:rest rdf:nil . _:267854 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:267874 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , ; "A gland that is part of a digestive tract [Automatically generated definition]."; ; "EMAPA:18815", "MA:0003202"; "digestive tract gland", "gland of digestive tract", "gland of lower gastrointestinal tract", "gut gland", "lower gastrointestinal tract gland"; "uberon"; "UBERON:0003408"; rdfs:label "gland of digestive tract" . a owl:Class; rdfs:subClassOf , _:267884; "Any tube, opening or passage that connects two distinct anatomical spaces."; ; "FMA has both conduit and conduit space. In EHDAA2 this is a surface feature"; , , "AEO:0000080", "EHDAA2:0003080", "FMA:242873"; "foramen", "foramina"; "uberon"; "opening", "ostia", "ostium"; "UBERON:0004111"; rdfs:label "anatomical conduit" . _:267884 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "An anatomical structure that develops (entirely or partially) from the endoderm."; "Grouping term for query purposes"; ; "uberon"; "UBERON:0004119"; ; rdfs:label "endoderm-derived structure" . a owl:Class; rdfs:subClassOf ; "An anatomical structure that develops (entirely or partially) from the mesoderm."; "Grouping term for query purposes"; ; "FBbt:00025998"; "mesodermal derivative"; "uberon"; "UBERON:0004120"; ; rdfs:label "mesoderm-derived structure" . a owl:Class; rdfs:subClassOf ; "An anatomical structure that develops (entirely or partially) from the ectoderm."; "Grouping term for query purposes"; ; "FBbt:00025990"; "ectodermal deriviative"; "uberon"; "UBERON:0004121"; ; rdfs:label "ectoderm-derived structure" . a owl:Class; owl:equivalentClass _:267a64; rdfs:subClassOf , _:267ac4, _:267ad4; "Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction."; ; "Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction.[AAO]"; "relationship type change: differentiates_from intermediate mesoderm (AAO:0010575) CHANGED TO: develops_from intermediate mesoderm (UBERON:0003064)[AAO]"; "Kidneys and gonads (of vertebrates) develop from adjacent tissues, and after the excretory or urinary ducts have developed, the reproductive system usually taps into them or their derivatives.[well established][VHOG]"; "genitourinary", "urogenital"; , , "AAO:0000624", "BILA:0000122", "BTO:0003091", "EFO:0003864", "EHDAA:1013", "EMAPA:16367", "EV:0100094", "FMA:280610", "GAID:362", "MESH:D014566", "NCIT:C12810", "OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g", "UMLS:C0042066", "VHOG:0000286", "XAO:0000140", "galen:GenitoUrinarySystem"; "urogenital system"; "uberon"; "GU tract", "UG tract", "Urogenitalsystem", "genito-urinary system", "genitourinary tract", "urogenital tract"; "UBERON:0004122"; , ; rdfs:label "genitourinary system" . _:267a64 a owl:Class; owl:intersectionOf _:267a74 . _:267a74 rdf:first ; rdf:rest _:267a94 . _:267a94 rdf:first _:267a84; rdf:rest _:267ab4 . _:267a84 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:267ab4 rdf:first _:267aa4; rdf:rest rdf:nil . _:267aa4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:267ac4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:267ad4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "The external genitalia are the outer sex organs, such as the penis or vulva in mammals"; ; , "FMA:45643"; "external genitalia"; "uberon"; "external reproductive organ", "external sex organ"; "UBERON:0004176"; , ; rdfs:comment "TODO: make a subdivision of reproductive system. Relabel. See https://github.com/obophenotype/uberon/issues/547"; rdfs:label "external genitalia" . a owl:Class; rdfs:subClassOf , _:267d34; "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body."; ; "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]"; "skeletal"; , , "AEO:0000168", "EHDAA2:0001843", "EHDAA:5047", "EMAPA:17213", "FMA:23875", "GAID:177", "MA:0003006", "MAT:0000032", "MESH:D012863", "MIAA:0000032", "OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA", "VSAO:0000026", "XAO:0004053", "galen:Skeleton"; "set of all bones", "set of bones of body"; "uberon"; "UBERON:0004288"; , , ; rdfs:label "skeleton"; rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/The-skeletal-system"^^xsd:anyURI . _:267d34 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:267d44; "Sum of all sensory systems in an organism."; ; "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs"; "FMA:78499"; "sense organ system"; "uberon"; "UBERON:0004456"; ; rdfs:label "entire sense organ system" . _:267d44 a owl:Restriction; owl:onProperty ; owl:someValuesFrom _:267d54 . _:267d54 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:267d64; "Anatomical system that has as its parts the heart and blood vessels."; "we treat cardiovascular as part of circulatory system, with the latter including other kinds of circulation, including lymph."; ; "The vessels of the cardiovascular system are as varied as the diverse organs they supply. However, these variations are based on modifications of a fundamental plan of organization common to vertebrates.[well established][VHOG]"; , , "AAO:0011001", "BILA:0000016", "BTO:0000088", "CALOHA:TS-1297", "EFO:0000791", "EHDAA2:0000216", "EHDAA:394", "EMAPA:16104", "EMAPA:16370", "EV:0100017", "FMA:7161", "GAID:467", "MA:0000010", "MAT:0000016", "MESH:D002319", "MIAA:0000016", "NCIT:C12686", "OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA", "TAO:0000010", "UMLS:C0007226", "VHOG:0000302", "WikipediaCategory:Cardiovascular_system", "XAO:0000100", "XAO:0001010", "ZFA:0000010"; "uberon"; "CV system", "Herz und Gefaesssystem"; "UBERON:0004535"; , , , ; rdfs:label "cardiovascular system" . _:267d64 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "The part of the cardiovascular system consisting of all arteries."; ; "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]"; , "BTO:0004690", "EHDAA2:0000143", "EHDAA:396", "EMAPA:16201", "EMAPA:16371", "MA:0002719", "VHOG:0000273"; "uberon"; "UBERON:0004572"; ; rdfs:label "arterial system" . a owl:Class; rdfs:subClassOf ; "The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions."; ; "The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG]"; , , "BTO:0004692", "EHDAA2:0002171", "EHDAA:486", "EMAPA:16240", "MA:0002720", "NCIT:C33858", "UMLS:C1267406", "VHOG:0000277"; "vein system"; "uberon"; "UBERON:0004582"; rdfs:label "venous system" . a owl:Class; rdfs:subClassOf ; "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles."; ; "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]", "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]"; "AAO:0011129", "TAO:0001890", "VSAO:0000128", "XAO:0004012", "ZFA:0005494", "galen:SkeletalStructure"; "uberon"; "UBERON:0004765"; , ; rdfs:label "skeletal element" . a owl:Class; rdfs:subClassOf ; "Anatomical system that consists of all the joints of the body."; ; , "EMAPA:35150", "FMA:23878", "MA:0003007", "VSAO:0000181"; "joint system", "set of all joints of body"; "uberon"; "set of all joints", "set of joints of body"; "UBERON:0004770"; rdfs:label "articular system" . a owl:Class; rdfs:subClassOf ; "A proximal-distal subdivision of the digestive tract."; "intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct."; "FBbt:00100315", "FMA:71131"; "uberon"; "alimentary system subdivision", "intestinal tract", "segment of intestinal tract", "subdivision of alimentary system"; "UBERON:0004921"; ; rdfs:label "subdivision of digestive tract" . _:268034 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "A proximal-distal subdivision of the digestive tract."; . _:268044 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "alimentary system subdivision"; "FMA:71131" . _:268054 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "subdivision of alimentary system"; "FMA:71131" . a owl:Class; owl:equivalentClass _:268064; rdfs:subClassOf , _:2680a4; "An organ that is part of a immune system [Automatically generated definition]."; ; "immune system organ"; "uberon"; "UBERON:0005057"; , ; rdfs:label "immune organ" . _:268064 a owl:Class; owl:intersectionOf _:268074 . _:268074 rdf:first ; rdf:rest _:268094 . _:268094 rdf:first _:268084; rdf:rest rdf:nil . _:268084 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2680a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:2680b4; rdfs:subClassOf , _:2680f4; "Any anatomical structure that is part of the reproductive system."; ; "reproductive system element", "reproductive system structure"; "uberon"; "UBERON:0005156"; ; rdfs:label "reproductive structure" . _:2680b4 a owl:Class; owl:intersectionOf _:2680c4 . _:2680c4 rdf:first ; rdf:rest _:2680e4 . _:2680e4 rdf:first _:2680d4; rdf:rest rdf:nil . _:2680d4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:2680f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "An organ or element that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland."; ; , "MA:0000522"; "abdomen organ"; "uberon"; "UBERON:0005172"; ; rdfs:label "abdomen element" . a owl:Class; rdfs:subClassOf ; "An organ or element that is part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region."; ; "EMAPA:37062", "MA:0000529"; "abdominal segment organ"; "uberon"; "UBERON:0005173"; ; rdfs:label "abdominal segment element" . a owl:Class; rdfs:subClassOf ; "An organ or element that part of the dorsum of the organism. Examples: spinal cord, vertebrae, muscles of back."; ; "EMAPA:37274", "MA:0001901"; "back organ", "dorsal region organ"; "uberon"; "UBERON:0005174"; ; rdfs:label "dorsal region element" . a owl:Class; rdfs:subClassOf ; "An organ or element that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions."; ; "EMAPA:37270", "MA:0000516"; "trunk organ"; "uberon"; "UBERON:0005177"; , ; rdfs:label "trunk region element" . a owl:Class; rdfs:subClassOf ; "An organ or element that is in the thoracic cavity. Examples: lung, heart, longus colli."; ; "EMAPA:37273", "MA:0000557"; "thoracic cavity organ"; "uberon"; "UBERON:0005178"; , ; rdfs:label "thoracic cavity element" . a owl:Class; rdfs:subClassOf ; "An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions."; ; "EMAPA:37271", "MA:0000563"; "uberon"; "upper body organ"; "UBERON:0005181"; ; rdfs:label "thoracic segment organ" . a owl:Class; rdfs:subClassOf , _:2683f4; "The part of the digestive system that excludes the hepatobiliary system."; "the decision to split digestive and gastrointestinal in this way may be revisited. As it currently stands, this class more closely aligns what MA calls the alimentary system"; ; "The system that includes the esophagus, stomach, small and large intestine, anus, liver, biliary tract, and pancreas[ncithesaurus:Gastrointestinal_System]."; "All metazoans (with degenerate exceptions) have some sort of digestive cavity with a means of entrance to and exit from it.[well established][VHOG]"; "that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class. We have one entity that is part of both gastrointestinal and hepatobiliary systems: hepatopancreatic ampulla."; , , "BTO:0000058", "CALOHA:TS-0407", "EHDAA2:0000110", "EHDAA:514", "EMAPA:16246", "EV:0100056", "FMA:71132", "GAID:294", "MA:0000323", "MESH:A03.492", "NCIT:C12378", "UMLS:C0012240", "VHOG:0000412", "galen:GastrointestinalTract"; "uberon"; "GI tract", "alimentary system", "alimentary tract", "gastro-intestinal system", "gastroenterological system", "gastrointestinal (GI) tract", "gastrointestinal system", "gastrointestinal tract"; "UBERON:0005409"; ; rdfs:label "alimentary part of gastrointestinal system" . _:2683f4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; ; "AEO:0000125", "CALOHA:TS-2122", "EHDAA2:0003125", "FBbt:00007006", "FMA:292313", "MIAA:0000019"; "uberon"; "developing structure", "developmental structure", "developmental tissue"; "UBERON:0005423"; rdfs:label "developing anatomical structure" . a owl:Class; owl:equivalentClass _:268404; rdfs:subClassOf , _:268444; "A acellular anatomical structure that is the bounding layer of a anatomical structure."; ; "FMA:63871"; "uberon"; "UBERON:0005764"; rdfs:label "acellular membrane" . _:268404 a owl:Class; owl:intersectionOf _:268414 . _:268414 rdf:first ; rdf:rest _:268434 . _:268434 rdf:first _:268424; rdf:rest rdf:nil . _:268424 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:268444 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "An acellular membrane that is part of the epithelium, lies adjacent to the epithelial cells, and is the fusion of the the basal lamina and the reticular lamina."; "this class represents a continuous sheet of basement membrane which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal membrane' represents a portion of substance on the scale of a single cell."; ; ; , , , "AAO:0010596", "FMA:63872", "GAID:915", "NCIT:C13191", "UMLS:C0004799"; "basement membrane of connective tissue", "membrana basalis"; "uberon"; "basement membrane"; "UBERON:0005769"; rdfs:label "basement membrane of epithelium" . a owl:Class; rdfs:subClassOf ; "Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not."; ; "fluid"; , , "EMAPA:37441", "FMA:280556", "GAID:266", "MESH:D001826", "galen:BodyFluid"; "body fluid"; "uberon"; "UBERON:0006314"; ; rdfs:label "bodily fluid" . a owl:Class; owl:equivalentClass _:268724; rdfs:subClassOf , _:268764; "A substance that is secreted by a mammary gland. The substance may differ depending on phase, with colostrum produced during pregancy/early lactation, and milk produced afterwards."; ; "EMAPA:36538", "MA:0002505"; "uberon"; "lactiferous gland fluid", "lactiferous gland secretion", "mammary gland fluid", "mammary gland secreted fluid", "mammary gland secretion", "secretion of mammary gland"; "UBERON:0006539"; rdfs:label "mammary gland fluid/secretion" . _:268724 a owl:Class; owl:intersectionOf _:268734 . _:268734 rdf:first ; rdf:rest _:268754 . _:268754 rdf:first _:268744; rdf:rest rdf:nil . _:268744 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:268764 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]."; "currently this is an extremely generic class, encompassing both protostomes and deuterostomes."; "branchial", "pharyngeal"; "FBbt:00005380", "MAT:0000049", "MIAA:0000049"; "uberon"; "anterior part of foregut", "pharyngeal tube"; "UBERON:0006562"; , ; rdfs:label "pharynx" . _:268774 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]."; "GO:0060465" . a owl:Class; owl:equivalentClass _:268784; rdfs:subClassOf , ; "Any gland that is part of the digestive system."; ; "AAO:0000130", "BTO:0000345"; "uberon"; "digestive gland"; "UBERON:0006925"; ; rdfs:label "digestive system gland" . _:268784 a owl:Class; owl:intersectionOf _:268794 . _:268794 rdf:first ; rdf:rest _:2687b4 . _:2687b4 rdf:first _:2687a4; rdf:rest rdf:nil . _:2687a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood or analogs[GO,modified]."; ; "note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. 'The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian'. Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis"; , "FBbt:00003154", "SPD:0000130", "TADS:0000147"; "dorsal tube", "heart"; "uberon"; "adult heart"; "UBERON:0007100"; ; rdfs:comment "Gene notes: Bmp, Nkx, Gata"; rdfs:label "primary circulatory organ" . a owl:Class; rdfs:subClassOf ; "The first chamber in the alimentary canal of a ruminant stomach, composed of the rumen and reticulum."; ; "retriculo-rumen"; "uberon"; "UBERON:0007364"; rdfs:label "reticulorumen" . _:268ac4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The first chamber in the alimentary canal of a ruminant stomach, composed of the rumen and reticulum."; , . a owl:Class; rdfs:subClassOf , _:268ad4; "The hard-shelled reproductive body produced by a bird and especially by the common domestic chicken; also: its contents used as food."; ; , "BSA:0000081", "BTO:0000369"; "uberon"; "egg"; "UBERON:0007379"; rdfs:label "shelled egg" . _:268ad4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:268ae4, _:268af4; "Any bodily fluid that has passed through a membrane such as the capillary wall, as a result of unbalanced hydrostatic and osmotic forces"; ; "transudative"; "characteristically low in protein and cellular content (unless there has been secondary concentration)"; "FMA:12276", "GAID:1195", "MESH:D005122", "ncithesaurus:Transudate"; "uberon"; "plasma ultrafiltrate"; "UBERON:0007779"; rdfs:label "transudate" . _:268ae4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:268af4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:268b04; rdfs:subClassOf , , _:268b44; "Any fluid produced by a serous gland."; ; "serous fluid"; ; "serosal fluid", "serous gland fluid"; "uberon"; "UBERON:0007794"; rdfs:label "secretion of serous gland" . _:268b04 a owl:Class; owl:intersectionOf _:268b14 . _:268b14 rdf:first ; rdf:rest _:268b34 . _:268b34 rdf:first _:268b24; rdf:rest rdf:nil . _:268b24 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:268b44 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:268b54; "Anatomical system that consists of all blood and lymph vessels."; "consider merging with vasculature"; ; "The cardiovascular and lymphatic systems, collectively[ncithesaurus:Vascular_System]."; "in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system"; , "BTO:0001085", "CALOHA:TS-2053", "EHDAA2:0004520", "EMAPA:35905", "MA:0002718", "NCIT:C33854", "UMLS:C0489903"; "uberon" . _:268b54 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . "Gefaesssystem@de"; "UBERON:0007798"; ; rdfs:label "vascular system" . a owl:Class; rdfs:subClassOf , ; "The gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]."; "check relationship to pylorus vs antrum"; ; , , , "EMAPA:27211", "FMA:14922", "NCIT:C33431", "UMLS:C0227239"; "glandula pylorica", "pyloric antrum gland", "pyloric gland", "pyloric mucuous gland"; "uberon"; "UBERON:0008861"; ; rdfs:label "pyloric gastric gland"; . a owl:Class; rdfs:subClassOf , , , _:268d54; ; "EHDAA2:0001371"; "uberon"; "pancreatis dorsalis"; "UBERON:0009708"; ; rdfs:label "dorsal pancreas" . _:268d54 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , , , _:269004; ; "EHDAA2:0001393"; "uberon"; "pancreatis ventralis"; "UBERON:0009709"; ; rdfs:label "ventral pancreas" . _:269004 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , ; "Branch or outpocketing of the digestive tract."; "FBbt:00100316"; "uberon"; "diverticulum of gut", "intestinal pouch"; "UBERON:0009854"; rdfs:label "digestive tract diverticulum" . _:269044 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "Branch or outpocketing of the digestive tract."; . _:269054 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "diverticulum of gut"; "FBbt:00100316" . a owl:Class; rdfs:subClassOf ; ; "galen:Diverticulum"; "pouch"; "uberon"; "diverticulum"; "UBERON:0009856"; rdfs:label "sac" . a owl:Class; rdfs:subClassOf ; "An anatomical structure that has more than one cell as a part."; ; "CARO:0010000", "FBbt:00100313"; "multicellular structure"; "uberon"; "UBERON:0010000"; ; rdfs:label "multicellular anatomical structure" . a owl:Class; rdfs:subClassOf , _:269094; "An organ of the digestive tract that is capable of retaining and storing food"; "This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates"; ; "BSA:0000123", "TADS:0000172", "TGMA:0001041"; "uberon"; "UBERON:0010039"; , ; rdfs:label "food storage organ" . _:269094 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; ; "the FMA class specifically refers to ureter"; "FMA:63212", "MESH:D024022", "NCIT:C32339", "NIF_Subcellular:sao7547390221"; "uberon"; "UBERON:0011860"; rdfs:label "collection of collagen fibrils" . a owl:Class; rdfs:subClassOf ; "A blood that is part of a vein."; ; "FMA:83067"; "blood in vein", "portion of venous blood", "venous blood"; "uberon"; "UBERON:0013756"; rdfs:label "venous blood" . a owl:Class; owl:equivalentClass _:26a6f4; rdfs:subClassOf , _:26a804; "Any of the organs or elements that are part of the digestive system. Examples: tongue, esophagus, spleen, crop, lunge feeding organ, tooth elements."; ; , "EMAPA:37843"; "digestive organ", "digestive system organ"; "uberon"; "UBERON:0013765"; , ; rdfs:label "digestive system element" . _:26a6f4 a owl:Class; owl:intersectionOf _:26a704 . _:26a704 rdf:first ; rdf:rest _:26a724 . _:26a724 rdf:first _:26a714; rdf:rest rdf:nil . _:26a714 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:26a804 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:26a814; rdfs:subClassOf , _:26a854; "Any structure that is placed on one side of the left-right axis of a bilaterian."; "This class is primarily to implement taxon constraints. It may be removed in the future."; ; "uberon"; "UBERON:0015212"; , ; rdfs:label "lateral structure" . _:26a814 a owl:Class; owl:intersectionOf _:26a824 . _:26a824 rdf:first ; rdf:rest _:26a844 . _:26a844 rdf:first _:26a834; rdf:rest rdf:nil . _:26a834 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:26a854 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:26a864; "A hollow, muscular organ, which, by contracting rhythmically, contributes to the circulation of lymph, blood or analogs. Examples: a chambered vertebrate heart; the tubular peristaltic heart of ascidians; the dorsal vessel of an insect; the lymoh heart of a reptile."; ; "heart"; "SPD:0000130"; "cardiac pump", "heart or heart like organ"; "circulatory vessel"; "uberon"; "cardiac structure"; "UBERON:0015228"; ; rdfs:label "circulatory organ" . _:26a864 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , _:26a874; ; "EMAPA:37597", "MA:0002449"; "heart/pericardium"; "uberon"; "UBERON:0015410"; rdfs:label "heart plus pericardium" . _:26a874 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf , ; "A viscus that is part of a abdomen."; ; "FMA:32413", "FMA:67355"; "abdominal viscera", "abdominal viscera set", "set of abdominal viscera"; "uberon"; "UBERON:0017672"; ; rdfs:label "abdominal viscera" . a owl:Class; owl:equivalentClass _:26a884; rdfs:subClassOf , ; "An exocrine gland that is part of a integumental system."; ; "integumental exocrine gland", "integumental system exocrine gland"; "uberon"; "UBERON:0019319"; rdfs:label "exocrine gland of integumental system" . _:26a884 a owl:Class; owl:intersectionOf _:26a894 . _:26a894 rdf:first ; rdf:rest _:26a8b4 . _:26a8b4 rdf:first _:26a8a4; rdf:rest rdf:nil . _:26a8a4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "Any substance in the body or expelled from the body that is in a gaseous state."; ; "FMA:84580"; "gas in anatomical space", "portion of gas in anatomical space"; "uberon"; "UBERON:0034873"; rdfs:label "bodily gas" . a owl:Class; rdfs:subClassOf ; "Any portion of gas located in a part of the respiratory system that is composed primarily of air."; ; "FMA:84581"; "respiratory air", "respiratory system air"; "uberon"; "UBERON:0034874"; rdfs:label "air in respiratory system" . a owl:Class; rdfs:subClassOf , _:26ab14; "An multicellular anatomical structure that has subparts of multiple organs as a part."; ; "CARO:0020001"; "uberon"; "anatomical cluster"; "UBERON:0034921"; rdfs:label "multi organ part structure" . _:26ab14 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:subClassOf ; "A cluster of cells, largely surrounded by a morphological boundary."; ; "CARO:0020002", "FMA:62807"; "uberon"; "UBERON:0034922"; rdfs:label "cell cluster" . a owl:Class; rdfs:subClassOf , _:26aca4; "A collection of anatomical structures that are alike in terms of their morphology or developmental origin."; "resolve if this should be a subclass of disconnected anatomical group. Some collections (e.g. the skeleton or skull) are arguably connected"; ; "uberon"; "UBERON:0034925"; rdfs:label "anatomical collection" . _:26aca4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; owl:equivalentClass _:26acb4; rdfs:subClassOf , _:26acf4; "Any portion of gas located in a part of the respiratory system."; ; "respiratory gas", "respiratory system gas"; "uberon"; "UBERON:0034947"; rdfs:label "gas in respiratory system" . _:26acb4 a owl:Class; owl:intersectionOf _:26acc4 . _:26acc4 rdf:first ; rdf:rest _:26ace4 . _:26ace4 rdf:first _:26acd4; rdf:rest rdf:nil . _:26acd4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . _:26acf4 a owl:Restriction; owl:onProperty ; owl:someValuesFrom . a owl:Class; rdfs:label "awaiting ontology review/placement"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Variant of Concern"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Variant of Interest"@en . a owl:Class; rdfs:subClassOf ; rdfs:label "Variant Under Monitoring"@en . a owl:Class; rdfs:subClassOf ; "a geopolitical region is a geographic region recognized by social or legal convention."@en; ; rdfs:label "geopolitical region"@en . a owl:Class; rdfs:subClassOf , ; "A township is a rural or sub-urban settlement."@en; ; rdfs:label "township"@en . owl:Thing a owl:Class; . a owl:Class; rdfs:subClassOf ; rdfs:comment "1つのエージェントによって公開またはキュレートされ、1つ以上の形式でアクセスまたはダウンロードできるデータの集合。"@ja, "A collection of data, published or curated by a single source, and available for access or download in one or more represenations."@en, "Kolekce dat poskytovaná či řízená jedním zdrojem, která je k dispozici pro přístup či stažení v jednom či více formátech."@cs, "Raccolta di dati, pubblicati o curati da un'unica fonte, disponibili per l'accesso o il download in uno o più formati."@it, "Una colección de datos, publicados o conservados por una única fuente, y disponibles para ser accedidos o descargados en uno o más formatos."@es, "Une collection de données, publiée ou élaborée par une seule source, et disponible pour accès ou téléchargement dans un ou plusieurs formats."@fr, "Μία συλλογή από δεδομένα, δημοσιευμένη ή επιμελημένη από μία και μόνο πηγή, διαθέσιμη δε προς πρόσβαση ή μεταφόρτωση σε μία ή περισσότερες μορφές."@el, "قائمة بيانات منشورة أو مجموعة من قبل مصدر ما و متاح الوصول إليها أو تحميلها"@ar; rdfs:isDefinedBy ; rdfs:label "Conjunto de datos"@es, "Dataset"@en, "Dataset"@it, "Datová sada"@cs, "Jeu de données"@fr, "Σύνολο Δεδομένων"@el, "قائمة بيانات"@ar, "データセット"@ja; "2018-02 - odstraněno tvrzení o podtřídě dctype:Dataset, jelikož rozsah dcat:Dataset zahrnuje několik dalších typů ze slovníku dctype."@cs, "2018-02 - se eliminó el axioma de subclase con dctype:Dataset porque el alcance de dcat:Dataset incluye muchos otros tipos del vocabulario dctype."@es, "2018-02 - sottoclasse di dctype:Dataset rimosso perché l'ambito di dcat:Dataset include diversi altri tipi dal vocabolario dctype."@it, "2018-02 - subclass of dctype:Dataset removed because scope of dcat:Dataset includes several other types from the dctype vocabulary."@en; "1つのエージェントによって公開またはキュレートされ、1つ以上の形式でアクセスまたはダウンロードできるデータの集合。"@ja, "A collection of data, published or curated by a single source, and available for access or download in one or more represenations."@en, "Kolekce dat poskytovaná či řízená jedním zdrojem, která je k dispozici pro přístup či stažení v jednom či více formátech."@cs, "Raccolta di dati, pubblicati o curati da un'unica fonte, disponibili per l'accesso o il download in uno o più formati."@it, "Una colección de datos, publicados o conservados por una única fuente, y disponibles para ser accedidos o descargados en uno o más formatos."@es, "Une collection de données, publiée ou élaborée par une seule source, et disponible pour accès ou téléchargement dans un ou plusieurs formats."@fr, "Μία συλλογή από δεδομένα, δημοσιευμένη ή επιμελημένη από μία και μόνο πηγή, διαθέσιμη δε προς πρόσβαση ή μεταφόρτωση σε μία ή περισσότερες μορφές."@el, "قائمة بيانات منشورة أو مجموعة من قبل مصدر ما و متاح الوصول إليها أو تحميلها"@ar; "Cette classe représente le jeu de données publié par le fournisseur de données. Dans les cas où une distinction est nécessaire entre le jeu de donénes et son entrée dans le catalogue, la classe registre de données peut être utilisée pour ce dernier."@fr, "Esta clase representa el conjunto de datos publicados. En los casos donde es necesario distinguir entre el conjunto de datos y su entrada en el catálogo de datos, se debe utilizar la clase 'registro del catálogo'."@es, "Questa classe descrive il dataset dal punto di vista concettuale. Possono essere disponibili una o più rappresentazioni, con diversi layout e formati schematici o serializzazioni."@it, "Questa classe rappresenta il dataset come pubblicato dall’editore. Nel caso in cui sia necessario operare una distinzione fra i metadati originali del dataset e il record dei metadati ad esso associato nel catalogo (ad esempio, per distinguere la data di modifica del dataset da quella del dataset nel catalogo) si può impiegare la classe catalog record."@it, "Tato třída reprezentuje datovou sadu tak, jak je publikována poskytovatelem dat. V případě potřeby rozlišení datové sady a jejího katalogizačního záznamu (jelikož metadata jako datum modifikace se mohou lišit) pro něj může být použita třída \"katalogizační záznam\"."@cs, "This class describes the conceptual dataset. One or more representations might be available, with differing schematic layouts and formats or serializations."@en, "This class represents the actual dataset as published by the dataset provider. In cases where a distinction between the actual dataset and its entry in the catalog is necessary (because metadata such as modification date and maintainer might differ), the catalog record class can be used for the latter."@en, "Η κλάση αυτή αναπαριστά το σύνολο δεδομένων αυτό καθ'εαυτό, όπως έχει δημοσιευθεί από τον εκδότη. Σε περιπτώσεις όπου είναι απαραίτητος ο διαχωρισμός μεταξύ του συνόλου δεδομένων και της καταγραφής αυτού στον κατάλογο (γιατί μεταδεδομένα όπως η ημερομηνία αλλαγής και ο συντηρητής μπορεί να διαφέρουν) η κλάση της καταγραφής καταλόγου μπορεί να χρησιμοποιηθεί για το τελευταίο."@el, "このクラスは、データセットの公開者が公開する実際のデータセットを表わします。カタログ内の実際のデータセットとそのエントリーとの区別が必要な場合（修正日と維持者などのメタデータが異なるかもしれないので）は、後者にcatalog recordというクラスを使用できます。"@ja . a owl:Class; rdfs:subClassOf . a owl:NamedIndividual, ; "COUNTRY"@en; "CY"@en; "Cyprus"@en; "Republic of Cyprus"@en; rdfs:label "Cyprus"@en . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AU """@en; """ Australia """@en; """ Commonwealth of Australia """@en; rdfs:label "Australia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NZ """@en; """ New Zealand """@en; """ New Zealand """@en; rdfs:label "New Zealand" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TR """@en; """ Turkey """@en; """ Republic of Turkey """@en; rdfs:label "Turkey" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SD """@en; """ Sudan """@en; """ Republic of the Sudan """@en; rdfs:label "Sudan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TN """@en; """ Tunisia """@en; """ Republic of Tunisia """@en; rdfs:label "Tunisia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ DZ """@en; """ Algeria """@en; """ People’s Democratic Republic of Algeria """@en; rdfs:label "Algeria" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MA """@en; """ Morocco """@en; """ Kingdom of Morocco """@en; rdfs:label "Morocco" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LY """@en; """ Libya """@en; """ Libya """@en; rdfs:label "Libya" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ET """@en; """ Ethiopia """@en; """ Federal Democratic Republic of Ethiopia """@en; rdfs:label "Ethiopia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ER """@en; """ Eritrea """@en; """ State of Eritrea """@en; rdfs:label "Eritrea" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ DJ """@en; """ Djibouti """@en; """ Republic of Djibouti """@en; rdfs:label "Djibouti" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MR """@en; """ Mauritania """@en; """ Islamic Republic of Mauritania """@en; rdfs:label "Mauritania" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ML """@en; """ Mali """@en; """ Republic of Mali """@en; rdfs:label "Mali" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NE """@en; """ Niger """@en; """ Republic of Niger """@en; rdfs:label "Niger" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TD """@en; """ Chad """@en; """ Republic of Chad """@en; rdfs:label "Chad" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ES """@en; """ Spain """@en; """ Kingdom of Spain """@en; rdfs:label "Spain" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ IS """@en; """ Iceland """@en; """ Iceland """@en; rdfs:label "Iceland" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BJ """@en; """ Benin """@en; """ Republic of Benin """@en; rdfs:label "Benin" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BF """@en; """ Burkina Faso """@en; """ Burkina Faso """@en; rdfs:label "Burkina Faso" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CI """@en; """ Côte d’Ivoire """@en; """ Republic of Côte d’Ivoire """@en; rdfs:label "Cote d'Ivoire" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GM """@en; """ The Gambia """@en; """ Republic of The Gambia """@en; rdfs:label "Gambia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GH """@en; """ Ghana """@en; """ Republic of Ghana """@en; rdfs:label "Ghana" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GN """@en; """ Guinea """@en; """ Republic of Guinea """@en; rdfs:label "Guinea" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GW """@en; """ Guinea-Bissau """@en; """ Republic of Guinea-Bissau """@en; rdfs:label "Guinea-Bissau" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LR """@en; """ Liberia """@en; """ Republic of Liberia """@en; rdfs:label "Liberia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NG """@en; """ Nigeria """@en; """ Federal Republic of Nigeria """@en; rdfs:label "Nigeria" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SN """@en; """ Senegal """@en; """ Republic of Senegal """@en; rdfs:label "Senegal" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SL """@en; """ Sierra Leone """@en; """ Republic of Sierra Leone """@en; rdfs:label "Sierra Leone" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TG """@en; """ Togo """@en; """ Togolese Republic """@en; rdfs:label "Togo" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CG """@en; """ Congo """@en; """ Republic of the Congo """@en; rdfs:label "Democratic Republic of the Congo" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ RW """@en; """ Rwanda """@en; """ Republic of Rwanda """@en; rdfs:label "Rwanda" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CD """@en; """ Democratic Republic of the Congo """@en; """ Democratic Republic of the Congo """@en; rdfs:label "Republic of Congo" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BI """@en; """ Burundi """@en; """ Republic of Burundi """@en; rdfs:label "Burundi" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GQ """@en; """ Equatorial Guinea """@en; """ Republic of Equatorial Guinea """@en; rdfs:label "Equatorial Guinea" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GA """@en; """ Gabon """@en; """ Gabonese Republic """@en; rdfs:label "Gabon" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CM """@en; """ Cameroon """@en; """ Republic of Cameroon """@en; rdfs:label "Cameroon" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ZA """@en; """ South Africa """@en; """ Republic of South Africa """@en; rdfs:label "Republic of South Africa" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AO """@en; """ Angola """@en; """ Republic of Angola """@en; rdfs:label "Angola" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NA """@en; """ Namibia """@en; """ Republic of Namibia """@en; rdfs:label "Namibia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BW """@en; """ Botswana """@en; """ Republic of Botswana """@en; rdfs:label "Botswana" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LS """@en; """ Lesotho """@en; """ Kingdom of Lesotho """@en; rdfs:label "Lesotho" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SZ """@en; """ Swaziland """@en; """ Kingdom of Swaziland """@en; rdfs:label "Swaziland" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MZ """@en; """ Mozambique """@en; """ Republic of Mozambique """@en; rdfs:label "Mozambique" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KE """@en; """ Kenya """@en; """ Republic of Kenya """@en; rdfs:label "Kenya" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ UG """@en; """ Uganda """@en; """ Republic of Uganda """@en; rdfs:label "Uganda" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TZ """@en; """ Tanzania """@en; """ United Republic of Tanzania """@en; rdfs:label "Tanzania" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SO """@en; """ Somalia """@en; """ Federal Republic of Somalia """@en; rdfs:label "Somalia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MW """@en; """ Malawi """@en; """ Republic of Malawi """@en; rdfs:label "Malawi" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ZW """@en; """ Zimbabwe """@en; """ Republic of Zimbabwe """@en; rdfs:label "Zimbabwe" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ZM """@en; """ Zambia """@en; """ Republic of Zambia """@en; rdfs:label "Zambia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CV """@en; """ Cape Verde """@en; """ Republic of Cape Verde """@en; rdfs:label "Cape Verde" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BB """@en; """ Barbados """@en; """ Barbados """@en; rdfs:label "Barbados" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ JO """@en; """ Jordan """@en; """ Hashemite Kingdom of Jordan """@en; rdfs:label "Jordan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SY """@en; """ Syria """@en; """ Syrian Arab Republic """@en; rdfs:label "Syria" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ IL """@en; """ Israel """@en; """ State of Israel """@en; rdfs:label "Israel" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LB """@en; """ Lebanon """@en; """ Lebanese Republic """@en; rdfs:label "Lebanon" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BO """@en; """ Bolivia """@en; """ Plurinational State of Bolivia """@en; rdfs:label "Bolivia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GY """@en; """ Guyana """@en; """ Cooperative Republic of Guyana """@en; rdfs:label "Guyana" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SR """@en; """ Suriname """@en; """ Republic of Suriname """@en; rdfs:label "Suriname" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CA """@en; """ Canada """@en; """ Canada """@en; rdfs:label "Canada" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GB """@en; """ United Kingdom """@en; """ United Kingdom of Great Britain and Northern Ireland """@en; rdfs:label "United Kingdom" . a owl:NamedIndividual, ; rdfs:label "Scotland" . a owl:NamedIndividual, ; rdfs:label "Wales" . a owl:NamedIndividual, ; rdfs:label "England" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ DE """@en; """ Germany """@en; """ Federal Republic of Germany """@en; rdfs:comment "begin_date: 1990-10-03."; rdfs:label "Germany" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ IT """@en; """ Italy """@en; """ Italian Republic """@en; rdfs:label "Italy" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NO """@en; """ Norway """@en; """ Kingdom of Norway """@en; rdfs:label "Norway" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ HR """@en; """ Croatia """@en; """ Republic of Croatia """@en; rdfs:label "Croatia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ RU """@en; """ Russia """@en; """ Russian Federation """@en; rdfs:comment "begin_date: 1991-12."; rdfs:label "Russia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ UA """@en; """ Ukraine """@en; """ Ukraine """@en; rdfs:label "Ukraine" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SE """@en; """ Sweden """@en; """ Kingdom of Sweden """@en; rdfs:label "Sweden" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BS """@en; """ Bahamas """@en; """ Commonwealth of the Bahamas """@en; rdfs:label "The Bahamas" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ JP """@en; """ Japan """@en; """ Japan """@en; rdfs:label "Japan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KP """@en; """ North Korea """@en; """ Democratic People’s Republic of Korea """@en; rdfs:label "North Korea" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CL """@en; """ Chile """@en; """ Republic of Chile """@en; rdfs:label "Chile" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BR """@en; """ Brazil """@en; """ Federative Republic of Brazil """@en; rdfs:label "Brazil" . a owl:NamedIndividual, ; rdfs:label "India" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CN """@en; """ China """@en; """ People’s Republic of China """@en; rdfs:label "China" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MX """@en; """ Mexico """@en; """ United Mexican States """@en; rdfs:label "Mexico" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PA """@en; """ Panama """@en; """ Republic of Panama """@en; rdfs:label "Panama" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ HN """@en; """ Honduras """@en; """ Republic of Honduras """@en; rdfs:label "Honduras" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CR """@en; """ Costa Rica """@en; """ Republic of Costa Rica """@en; rdfs:label "Costa Rica" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ EC """@en; """ Ecuador """@en; """ Republic of Ecuador """@en; rdfs:label "Ecuador" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AR """@en; """ Argentina """@en; """ Argentine Republic """@en; rdfs:label "Argentina" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CO """@en; """ Colombia """@en; """ Republic of Colombia """@en; rdfs:label "Colombia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ UY """@en; """ Uruguay """@en; """ Eastern Republic of Uruguay """@en; rdfs:label "Uruguay" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ VE """@en; """ Venezuela """@en; """ Bolivarian Republic of Venezuela """@en; rdfs:label "Venezuela" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PE """@en; """ Peru """@en; """ Republic of Peru """@en; rdfs:label "Peru" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PY """@en; """ Paraguay """@en; """ Republic of Paraguay """@en; rdfs:label "Paraguay" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BZ """@en; """ Belize """@en; """ Belize """@en; rdfs:label "Belize" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SV """@en; """ El Salvador """@en; """ Republic of El Salvador """@en; rdfs:label "El Salvador" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GT """@en; """ Guatemala """@en; """ Republic of Guatemala """@en; rdfs:label "Guatemala" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ FI """@en; """ Finland """@en; """ Republic of Finland """@en; rdfs:label "Finland" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BE """@en; """ Belgium """@en; """ Kingdom of Belgium """@en; rdfs:label "Belgium" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PL """@en; """ Poland """@en; """ Republic of Poland """@en; rdfs:label "Poland" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ FR """@en; """ France """@en; """ French Republic """@en; rdfs:label "France" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CH """@en; """ Switzerland """@en; """ Swiss Confederation """@en; rdfs:label "Switzerland" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AT """@en; """ Austria """@en; """ Republic of Austria """@en; rdfs:label "Austria" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ IE """@en; """ Ireland """@en; """ Ireland """@en; rdfs:label "Ireland" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PT """@en; """ Portugal """@en; """ Portuguese Republic """@en; rdfs:label "Portugal" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GR """@en; """ Greece """@en; """ Hellenic Republic """@en; rdfs:label "Greece" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LU """@en; """ Luxembourg """@en; """ Grand Duchy of Luxembourg """@en; rdfs:label "Luxembourg" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AD """@en; """ Andorra """@en; """ Principality of Andorra """@en; rdfs:label "Andorra" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BG """@en; """ Bulgaria """@en; """ Republic of Bulgaria """@en; rdfs:label "Bulgaria" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ RO """@en; """ Romania """@en; """ Romania """@en; rdfs:label "Romania" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ HU """@en; """ Hungary """@en; """ Hungary """@en; rdfs:label "Hungary" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AL """@en; """ Albania """@en; """ Republic of Albania """@en; rdfs:label "Albania" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CZ """@en; """ Czech Republic """@en; """ Czech Republic """@en; rdfs:label "Czech Republic" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SI """@en; """ Slovenia """@en; """ Republic of Slovenia """@en; rdfs:label "Slovenia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SK """@en; """ Slovakia """@en; """ Slovak Republic """@en; rdfs:label "Slovakia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ RS """@en; """ Serbia """@en; """ Republic of Serbia """@en; rdfs:label "Serbia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LV """@en; """ Latvia """@en; """ Republic of Latvia """@en; rdfs:comment "ISO3166-2 codes for 2009 revision of admin. units seem not to have been assigned."; rdfs:label "Latvia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ EE """@en; """ Estonia """@en; """ Republic of Estonia """@en; rdfs:label "Estonia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LT """@en; """ Lithuania """@en; """ Republic of Lithuania """@en; rdfs:label "Lithuania" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NI """@en; """ Nicaragua """@en; """ Republic of Nicaragua """@en; rdfs:label "Nicaragua" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SM """@en; """ San Marino """@en; """ Republic of San Marino """@en; rdfs:label "San Marino" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ VA """@en; """ the Holy See/ Vatican City State """@en; """ the Holy See/ Vatican City State """@en; rdfs:label "Vatican City" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ID """@en; """ Indonesia """@en; """ Republic of Indonesia """@en; rdfs:label "Indonesia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TH """@en; """ Thailand """@en; """ Kingdom of Thailand """@en; rdfs:label "Thailand" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BD """@en; """ Bangladesh """@en; """ People’s Republic of Bangladesh """@en; rdfs:label "Bangladesh" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ VN """@en; """ Vietnam """@en; """ Socialist Republic of Vietnam """@en; rdfs:label "Viet Nam" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ CU """@en; """ Cuba """@en; """ Republic of Cuba """@en; rdfs:label "Cuba" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TT """@en; """ Trinidad and Tobago """@en; """ Republic of Trinidad and Tobago """@en; rdfs:label "Trinidad and Tobago" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ JM """@en; """ Jamaica """@en; """ Jamaica """@en; rdfs:label "Jamaica" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MC """@en; """ Monaco """@en; """ Principality of Monaco """@en; rdfs:label "Monaco" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LI """@en; """ Liechtenstein """@en; """ Principality of Liechtenstein """@en; rdfs:label "Liechtenstein" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MD """@en; """ Moldova """@en; """ Republic of Moldova """@en; rdfs:label "Moldova" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BN """@en; """ Brunei """@en; """ Brunei Darussalam """@en; rdfs:label "Brunei Darussalam" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MY """@en; """ Malaysia """@en; """ Malaysia """@en; rdfs:label "Malaysia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BT """@en; """ Bhutan """@en; """ Kingdom of Bhutan """@en; rdfs:label "Bhutan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PG """@en; """ Papua New Guinea """@en; """ Independent State of Papua New Guinea """@en; rdfs:label "Papua New Guinea" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SG """@en; """ Singapore """@en; """ Republic of Singapore """@en; rdfs:label "Singapore" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LK """@en; """ Sri Lanka """@en; """ Democratic Socialist Republic of Sri Lanka """@en; rdfs:label "Sri Lanka" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TL """@en; """ Timor-Leste """@en; """ Democratic Republic of Timor-Leste """@en; rdfs:label "Timor" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ EG """@en; """ Egypt """@en; """ Arab Republic of Egypt """@en; rdfs:comment "The 2nd level administrative regions of Egypt are very confusuing and different sources conflicting. Those in gaz.obo are from GeoHive (http://www.xist.org/default1.aspx) and are not fully in agreement with those from the WHO (the file EGY_SALB_table.xls downloaded from http://www.who.int/whosis/database/gis/salb/salb_coding.aspx#DATA)."; rdfs:label "Egypt" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ DO """@en; """ Dominican Republic """@en; """ Dominican Republic """@en; rdfs:label "Dominican Republic" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ HT """@en; """ Haiti """@en; """ Republic of Haiti """@en; rdfs:label "Haiti" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AM """@en; """ Armenia """@en; """ Republic of Armenia """@en; rdfs:label "Armenia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NP """@en; """ Nepal """@en; """ Federal Democratic Republic of Nepal """@en; rdfs:label "Nepal" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ IR """@en; """ Iran """@en; """ Islamic Republic of Iran """@en; rdfs:label "Iran" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ IQ """@en; """ Iraq """@en; """ Republic of Iraq """@en; rdfs:label "Iraq" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PH """@en; """ Philippines """@en; """ Republic of the Philippines """@en; rdfs:label "The Philippines" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AZ """@en; """ Azerbaijan """@en; """ Republic of Azerbaijan """@en; rdfs:label "Azerbaijan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GE """@en; """ Georgia """@en; """ Georgia """@en; rdfs:comment "begin_date: 1936-12-05. end_date: 1990-10-20."; rdfs:label "Georgia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ UZ """@en; """ Uzbekistan """@en; """ Republic of Uzbekistan """@en; rdfs:comment "begin_date: 1991-12-31."; rdfs:label "Uzbekistan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KZ """@en; """ Kazakhstan """@en; """ Republic of Kazakhstan """@en; rdfs:comment "Geographically the western regions of Kazakhstan may be in Europe."; rdfs:label "Kazakhstan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TM """@en; """ Turkmenistan """@en; """ Turkmenistan """@en; rdfs:label "Turkmenistan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PK """@en; """ Pakistan """@en; """ Islamic Republic of Pakistan """@en; rdfs:label "Pakistan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SA """@en; """ Saudi Arabia """@en; """ Kingdom of Saudi Arabia """@en; rdfs:label "Saudi Arabia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BH """@en; """ Bahrain """@en; """ Kingdom of Bahrain """@en; rdfs:label "Bahrain" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AE """@en; """ United Arab Emirates """@en; """ United Arab Emirates """@en; rdfs:label "United Arab Emirates" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ OM """@en; """ Oman """@en; """ Sultanate of Oman """@en; rdfs:label "Oman" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ YE """@en; """ Yemen """@en; """ Republic of Yemen """@en; rdfs:label "Yemen" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KW """@en; """ Kuwait """@en; """ State of Kuwait """@en; rdfs:label "Kuwait" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ QA """@en; """ Qatar """@en; """ State of Qatar """@en; rdfs:label "Qatar" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TW """@en; """ Taiwan """@en; """ Taiwan """@en; rdfs:label "Republic of China" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KM """@en; """ Comoros """@en; """ Union of the Comoros """@en; rdfs:label "Comoros" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AF """@en; """ Afghanistan """@en; """ Islamic Republic of Afghanistan """@en; rdfs:label "Afghanistan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AG """@en; """ Antigua and Barbuda """@en; """ Antigua and Barbuda """@en; rdfs:label "Antigua and Barbuda" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BY """@en; """ Belarus """@en; """ Republic of Belarus """@en; rdfs:comment "begin_date: 1990-07-27."; rdfs:label "Belarus" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ BA """@en; """ Bosnia and Herzegovina """@en; """ Bosnia and Herzegovina """@en; rdfs:label "Bosnia and Herzegovina" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KH """@en; """ Cambodia """@en; """ Kingdom of Cambodia """@en; rdfs:label "Cambodia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LA """@en; """ Laos """@en; """ Lao People’s Democratic Republic """@en; rdfs:label "Laos" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ DM """@en; """ Dominica """@en; """ Commonwealth of Dominica """@en; rdfs:label "Dominica" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ FJ """@en; """ Fiji """@en; """ Republic of Fiji """@en; rdfs:label "Fiji" . a owl:NamedIndividual, ; rdfs:label "Kyrgyzstan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KG """@en; """ Kyrgyzstan """@en; """ Kyrgyz Republic """@en; rdfs:label "Kiribati" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MK """@en; """ Former Yugoslav Republic of Macedonia, the """@en; """ Former Yugoslav Republic of Macedonia, the. This code is in accordance with ISO 3166-2, code taken from name in Macedonian: Makedonija. """@en; rdfs:label "Macedonia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ME """@en; """ Montenegro """@en; """ Montenegro """@en; rdfs:label "Montenegro" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MM """@en; """ Myanmar/Burma """@en; """ Myanmar/Burma """@en; rdfs:label "Myanmar" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NR """@en; """ Nauru """@en; """ Republic of Nauru """@en; rdfs:label "Nauru" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ NU """@en; """ Niue """@en; """ Niue """@en; rdfs:label "Niue Fekai" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ PW """@en; """ Palau """@en; """ Republic of Palau """@en; rdfs:label "Palau" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ KN """@en; """ Saint Kitts and Nevis """@en; """ Federation of Saint Kitts and Nevis """@en; rdfs:label "Saint Kitts-Nevis" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ LC """@en; """ Saint Lucia """@en; """ Saint Lucia """@en; rdfs:label "Saint Lucia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ AS """@en; """ American Samoa """@en; """ American Samoa: territory of the USA. """@en; rdfs:label "Samoa" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TJ """@en; """ Tajikistan """@en; """ Republic of Tajikistan """@en; rdfs:label "Tajikistan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TO """@en; """ Tonga """@en; """ Kingdom of Tonga """@en; rdfs:label "Tonga" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ VU """@en; """ Vanuatu """@en; """ Republic of Vanuatu """@en; rdfs:label "Vanuatu" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ ST """@en; """ São Tomé and Príncipe """@en; """ Democratic Republic of São Tomé and Príncipe """@en; rdfs:label "Sao Tome and Principe" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ MN """@en; """ Mongolia """@en; """ Mongolia """@en; rdfs:label "Mongolia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TV """@en; """ Tuvalu """@en; """ Tuvalu """@en; rdfs:label "Tuvalu" . a owl:NamedIndividual, ; rdfs:label "Kosovo" . a owl:NamedIndividual, ; rdfs:comment "begin_date: 1943-11-29. end_date: 1991-06-25. Previous to 1943: Kingdom of Yugoslavia, begins_in: 1918-12-01; end_date: 1941-04_17."; rdfs:label "[Former] Yugoslavia" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ SS """@en; """ South Sudan """@en; """ Republic of South Sudan """@en; rdfs:label "South Sudan" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ TK """@en; """ Tokelau """@en; """ Tokelau: territory of New Zealand. """@en; rdfs:label "Tokelau" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ VC """@en; """ Saint Vincent and the Grenadines """@en; """ Saint Vincent and the Grenadines """@en; rdfs:label "Saint Vincent and the Grenadines" . a owl:NamedIndividual, ; """ COUNTRY """@en; """ GD """@en; """ Grenada """@en; """ Grenada """@en; rdfs:label "Grenada" . a owl:NamedIndividual, ; "MTX"@en; "A0C78"@en; "Gallus gallus broiler"@en; "Gallus gallus animals raised for meat production purposes. The part considered is by default the whole living organism.£https://en.wikipedia.org/wiki/Broiler"@en; rdfs:label "broiler chickens"@en . a owl:NamedIndividual, ; "MTX"@en; "A0C9L"@en; "Dairy cows"@en; "Cattle having reached the physical maturity, for milk production. The part considered is by default the whole living organism.£https://en.wikipedia.org/wiki/Dairy_cattle"@en; rdfs:label "dairy cattle"@en . a owl:NamedIndividual, ; "MTX"@en; "A0C9Q"@en; "Meat production cattle"@en; "Cattle having reached the physical maturity, for meat production. The part considered is by default the whole living organism.£https://en.wikipedia.org/wiki/Beef_cattle"@en; rdfs:label "beef cattle"@en . "Person:Alan Ruttenberg" . "To say that each spatiotemporal region s temporally_projects_onto some temporal region t is to say that t is the temporal extension of s. (axiom label in BFO2 Reference: [080-003])"@en, "To say that spatiotemporal region s spatially_projects_onto spatial region r at t is to say that r is the spatial extent of s at t. (axiom label in BFO2 Reference: [081-003])"@en . _:26ecf4 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "To say that each spatiotemporal region s temporally_projects_onto some temporal region t is to say that t is the temporal extension of s. (axiom label in BFO2 Reference: [080-003])"@en; . _:26ed04 a owl:Axiom; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "To say that spatiotemporal region s spatially_projects_onto spatial region r at t is to say that r is the spatial extent of s at t. (axiom label in BFO2 Reference: [081-003])"@en; . _:26ed14 a owl:AllDisjointClasses; owl:members _:26ed24 . _:26ed24 rdf:first ; rdf:rest _:26ed34 . _:26ed34 rdf:first ; rdf:rest _:26ed44 . _:26ed44 rdf:first ; rdf:rest _:26ed54 . _:26ed54 rdf:first ; rdf:rest _:26ed64 . _:26ed64 rdf:first ; rdf:rest _:26ed74 . _:26ed74 rdf:first ; rdf:rest rdf:nil .