PREFIX nmdc: <https://w3id.org/nmdc/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

nmdc:BooleanValue a rdfs:Class ;
  rdfs:comment "A value that is a boolean" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:has_boolean_value a rdf:Property ;
  rdfs:comment "Links a quantity value to a boolean" ;
  rdfs:range xsd:boolean .

nmdc:has_raw_value a rdf:Property ;
  rdfs:comment "The value that was specified for an annotation in raw form, i.e. a string. E.g. \"2 cm\" or \"2-4 cm\"" , "The raw value for a  geolocation should follow {lat} {long}" , "Unnormalized atomic string representation, should in syntax {number} {unit}" , "The full name of the Investigator in format FIRST LAST." ;
  rdfs:domain nmdc:AttributeValue ;
  rdfs:range xsd:string .

nmdc:was_generated_by a rdf:Property ;
  rdfs:comment "provenance for the annotation." ;
  rdfs:range nmdc:Activity , nmdc:MetagenomeAnnotationActivity .

nmdc:FunctionalAnnotation a rdfs:Class ;
  rdfs:comment "An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods" ;
  rdfs:seeAlso <https://img.jgi.doe.gov/docs/functional-annotation.pdf> , <https://github.com/microbiomedata/mg_annotation/blob/master/functional-annotation.wdl> .

nmdc:subject a rdf:Property ;
  rdfs:range nmdc:GeneProduct .

nmdc:has_function a rdf:Property ;
  rdfs:range xsd:string .

nmdc:MagsAnalysisActivity a rdfs:Class ;
  rdfs:label "Metagenome-Assembled Genome analysis activity" ;
  rdfs:comment "A workflow execution activity that uses computational binning tools to group assembled contigs into genomes" ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:used a rdf:Property ;
  rdfs:comment "The instrument used to collect the data used in the analysis" ;
  rdfs:domain nmdc:Activity ;
  rdfs:range xsd:string , nmdc:Instrument .

nmdc:name a rdf:Property ;
  rdfs:comment "A human readable label for an entity" , "The full name of the Investigator. It should follow the format FIRST [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional." ;
  rdfs:range xsd:string .

nmdc:git_url a rdf:Property ;
  rdfs:comment "Example: https://github.com/microbiomedata/mg_annotation/releases/tag/0.1" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:has_output a rdf:Property ;
  rdfs:comment "An output biosample to a processing step" ;
  rdfs:domain nmdc:NamedThing ;
  rdfs:range nmdc:NamedThing .

nmdc:started_at_time a rdf:Property ;
  rdfs:range xsd:dateTime .

nmdc:binned_contig_num a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:low_depth_contig_num a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:type a rdf:Property ;
  rdfs:comment "An optional string that specifies the type object.  This is used to allow for searches for different kinds of objects." ;
  rdfs:range xsd:string .

nmdc:input_contig_num a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:was_informed_by a rdf:Property ;
  rdfs:range nmdc:Activity .

nmdc:mags_list a rdf:Property ;
  rdfs:range nmdc:MagBin .

nmdc:too_short_contig_num a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:version a rdf:Property ;
  rdfs:range xsd:string .

nmdc:execution_resource a rdf:Property ;
  rdfs:comment "Example: NERSC-Cori" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:unbinned_contig_num a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:has_input a rdf:Property ;
  rdfs:comment "An input to a process." ;
  rdfs:domain nmdc:NamedThing ;
  rdfs:range nmdc:NamedThing , nmdc:Biosample .

<http://purl.org/dc/terms/isPartOf> a rdf:Property ;
  rdfs:comment "Links a resource to another resource that either logically or physically includes it." ;
  rdfs:domain nmdc:NamedThing ;
  rdfs:range nmdc:NamedThing .

nmdc:was_associated_with a rdf:Property ;
  rdfs:comment "the agent/entity associated with the generation of the file" ;
  rdfs:range nmdc:WorkflowExecutionActivity , nmdc:Agent .

nmdc:ended_at_time a rdf:Property ;
  rdfs:range xsd:dateTime .

nmdc:Biosample a rdfs:Class ;
  rdfs:comment "Biological source material which can be characterized by an experiment." ;
  rdfs:subClassOf nmdc:MaterialEntity .

nmdc:ammonium_nitrogen a rdf:Property ;
  rdfs:label "ammonium nitrogen" ;
  rdfs:comment "Concentration of ammonium nitrogen in the sample" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

<https://w3id.org/mixs/0000012> a rdf:Property ;
  rdfs:label "broad-scale environmental context" ;
  rdfs:comment "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS" ;
  rdfs:range nmdc:ControlledIdentifiedTermValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:proport_woa_temperature a rdf:Property ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001038> a rdf:Property ;
  rdfs:label "biotic regimen" ;
  rdfs:comment "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000137> a rdf:Property ;
  rdfs:label "glucosidase activity" ;
  rdfs:comment "Measurement of glucosidase activity" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000421> a rdf:Property ;
  rdfs:label "alkalinity" ;
  rdfs:comment "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:sample_type a rdf:Property ;
  rdfs:label "sample type" ;
  rdfs:comment "Type of sample being submitted" ;
  rdfs:range nmdc:SampleTypeEnum .

<https://w3id.org/mixs/0000093> a rdf:Property ;
  rdfs:label "elevation, meters" ;
  rdfs:comment "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:dna_project_contact a rdf:Property ;
  rdfs:label "DNA seq project contact" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000028> a rdf:Property ;
  rdfs:label "observed biotic relationship" ;
  rdfs:comment "Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object" ;
  rdfs:range nmdc:BioticRelationshipEnum ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

<https://w3id.org/mixs/0001043> a rdf:Property ;
  rdfs:label "growth facility" ;
  rdfs:comment "Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research" ;
  rdfs:range nmdc:ControlledTermValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000008> a rdf:Property ;
  rdfs:label "experimental factor" ;
  rdfs:comment "Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI" ;
  rdfs:range nmdc:ControlledTermValue ;
  rdfs:subPropertyOf nmdc:investigation_field .

nmdc:lbceq a rdf:Property ;
  rdfs:label "lime buffer capacity (after 5 day incubation)" ;
  rdfs:comment "lime buffer capacity, determined at equilibrium after 5 day incubation" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

<https://w3id.org/mixs/0000013> a rdf:Property ;
  rdfs:label "local environmental context" ;
  rdfs:comment "Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS." ;
  rdfs:range nmdc:ControlledIdentifiedTermValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:dna_cont_type a rdf:Property ;
  rdfs:label "DNA container type" ;
  rdfs:comment "Tube or plate (96-well)" ;
  rdfs:range nmdc:DnaContTypeEnum .

<https://w3id.org/mixs/0000503> a rdf:Property ;
  rdfs:label "n-alkanes" ;
  rdfs:comment "Concentration of n-alkanes; can include multiple n-alkanes" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:community a rdf:Property ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000434> a rdf:Property ;
  rdfs:label "dissolved inorganic carbon" ;
  rdfs:comment "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:microbial_biomass_n a rdf:Property ;
  rdfs:label "microbial biomass nitrogen" ;
  rdfs:comment "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ;
  rdfs:seeAlso <https://w3id.org/mixs/microbial_biomass> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000505> a rdf:Property ;
  rdfs:label "phosphate" ;
  rdfs:comment "Concentration of phosphate" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_sample_format a rdf:Property ;
  rdfs:label "DNA sample format" ;
  rdfs:comment "Solution in which the DNA sample has been suspended" ;
  rdfs:range nmdc:DnaSampleFormatEnum .

<https://w3id.org/mixs/0001106> a rdf:Property ;
  rdfs:label "pH method" ;
  rdfs:comment "Reference or method used in determining ph" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000010> a rdf:Property ;
  rdfs:label "geographic location (country and/or sea,region)" ;
  rdfs:comment "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:collection_date_inc a rdf:Property ;
  rdfs:label "incubation collection date" ;
  rdfs:comment "Date the incubation was harvested/collected/ended. Only relevant for incubation samples." ;
  rdfs:seeAlso <https://w3id.org/mixs/collection_date> ;
  rdfs:range xsd:string .

nmdc:biosample_categories a rdf:Property ;
  rdfs:label "Categories the biosample belongs to" ;
  rdfs:range nmdc:BiosampleCategoryEnum .

<https://w3id.org/mixs/0000490> a rdf:Property ;
  rdfs:label "alkyl diethers" ;
  rdfs:comment "Concentration of alkyl diethers" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_collect_site a rdf:Property ;
  rdfs:label "DNA collection site" ;
  rdfs:comment "Provide information on the site your DNA sample was collected from" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000320> a rdf:Property ;
  rdfs:label "history/extreme events" ;
  rdfs:comment "Unusual physical events that may have affected microbial populations" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000412> a rdf:Property ;
  rdfs:label "pressure" ;
  rdfs:comment "Pressure to which the sample is subject to, in atmospheres" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_cont_type a rdf:Property ;
  rdfs:label "RNA container type" ;
  rdfs:comment "Tube or plate (96-well)" ;
  rdfs:range nmdc:RnaContTypeEnum .

<https://w3id.org/mixs/0000569> a rdf:Property ;
  rdfs:label "light regimen" ;
  rdfs:comment "Information about treatment(s) involving exposure to light, including both light intensity and quality." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:location a rdf:Property ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000110> a rdf:Property ;
  rdfs:label "sample storage temperature" ;
  rdfs:comment "Temperature at which sample was stored, e.g. -80 degree Celsius" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:ecosystem_category a rdf:Property ;
  rdfs:comment "Ecosystem categories represent divisions within the ecosystem based on specific characteristics of the environment from where an organism or sample is isolated. Ecosystem category is in position 2/5 in a GOLD path." ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/help> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:gold_path_field .

nmdc:other_treatment a rdf:Property ;
  rdfs:label "other treatments" ;
  rdfs:comment "Other treatments applied to your samples that are not applicable to the provided fields" ;
  rdfs:seeAlso <https://w3id.org/mixs/additional_info> ;
  rdfs:range xsd:string .

nmdc:rna_absorb_2 a rdf:Property ;
  rdfs:label "RNA absorbance 260/230" ;
  rdfs:comment "260/230 measurement of RNA sample purity" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000314> a rdf:Property ;
  rdfs:label "current vegetation method" ;
  rdfs:comment "Reference or method used in vegetation classification" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0001086> a rdf:Property ;
  rdfs:label "history/fire" ;
  rdfs:comment "Historical and/or physical evidence of fire" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000328> a rdf:Property ;
  rdfs:label "link to climate information" ;
  rdfs:comment "Link to climate resource" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000652> a rdf:Property ;
  rdfs:label "heavy metals/ extreme unusual properties" ;
  rdfs:comment "Heavy metals present in the sample and their concentrations." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000319> a rdf:Property ;
  rdfs:label "history/flooding" ;
  rdfs:comment "Historical and/or physical evidence of flooding" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000753> a rdf:Property ;
  rdfs:label "oxygenation status of sample" ;
  rdfs:comment "Oxygenation status of sample" ;
  rdfs:range nmdc:RelToOxygenEnum ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000736> a rdf:Property ;
  rdfs:label "size-fraction upper threshold" ;
  rdfs:comment "Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000334> a rdf:Property ;
  rdfs:label "soil type method" ;
  rdfs:comment "Reference or method used in determining soil series name or other lower-level classification" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000298> a rdf:Property ;
  rdfs:label "alkalinity method" ;
  rdfs:comment "Method used for alkalinity measurement" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000329> a rdf:Property ;
  rdfs:label "link to classification information" ;
  rdfs:comment "Link to digitized soil maps or other soil classification information" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0001084> a rdf:Property ;
  rdfs:label "profile position" ;
  rdfs:comment "Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas" ;
  rdfs:range nmdc:ProfilePositionEnum ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_isolate_meth a rdf:Property ;
  rdfs:label "DNA isolation method" ;
  rdfs:comment "Describe the method/protocol/kit used to extract DNA/RNA." ;
  rdfs:range xsd:string .

nmdc:analysis_type a rdf:Property ;
  rdfs:label "analysis/data type" ;
  rdfs:comment "Select all the data types associated or available for this biosample" ;
  rdfs:seeAlso <https://w3id.org/mixs/investigation_type> ;
  rdfs:range nmdc:AnalysisTypeEnum .

nmdc:proposal_dna a rdf:Property ;
  rdfs:label "DNA proposal ID" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000498> a rdf:Property ;
  rdfs:label "mean friction velocity" ;
  rdfs:comment "Measurement of mean friction velocity" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000324> a rdf:Property ;
  rdfs:label "aluminum saturation method/ extreme unusual properties" ;
  rdfs:comment "Reference or method used in determining Aluminum saturation" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000427> a rdf:Property ;
  rdfs:label "ammonium" ;
  rdfs:comment "Concentration of ammonium in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:filter_method a rdf:Property ;
  rdfs:label "filter method" ;
  rdfs:comment "Type of filter used or how the sample was filtered" ;
  rdfs:seeAlso <https://w3id.org/mixs/filter_type> ;
  rdfs:range xsd:string .

nmdc:org_nitro_method a rdf:Property ;
  rdfs:label "organic nitrogen method" ;
  rdfs:comment "Method used for obtaining organic nitrogen" ;
  rdfs:seeAlso <https://w3id.org/mixs/org_nitro> , <https://w3id.org/mixs/tot_nitro_cont_meth> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000644> a rdf:Property ;
  rdfs:label "mean annual precipitation" ;
  rdfs:comment "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:non_microb_biomass a rdf:Property ;
  rdfs:label "non-microbial biomass" ;
  rdfs:comment "Amount of biomass; should include the name for the part of biomass measured, e.g.insect, plant, total. Can include multiple measurements separated by ;" ;
  rdfs:seeAlso <https://w3id.org/mixs/biomass> , <https://w3id.org/mixs/microbial_biomass> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000106> a rdf:Property ;
  rdfs:label "dissolved inorganic phosphorus" ;
  rdfs:comment "Concentration of dissolved inorganic phosphorus in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_project_contact a rdf:Property ;
  rdfs:label "RNA seq project contact" ;
  rdfs:range xsd:string .

nmdc:replicate_number a rdf:Property ;
  rdfs:label "replicate number" ;
  rdfs:comment "If sending biological replicates, indicate the rep number here." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000009> a rdf:Property ;
  rdfs:label "geographic location (latitude and longitude)" ;
  rdfs:comment "This is currently a required field but it's not clear if this should be required for human hosts" ;
  rdfs:range nmdc:GeolocationValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:rna_seq_project_pi a rdf:Property ;
  rdfs:label "RNA seq project PI" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000111> a rdf:Property ;
  rdfs:label "sample volume or weight for DNA extraction" ;
  rdfs:comment "Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

nmdc:nitrate_nitrogen a rdf:Property ;
  rdfs:label "nitrate_nitrogen" ;
  rdfs:comment "Concentration of nitrate nitrogen in the sample" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:nitrite_nitrogen a rdf:Property ;
  rdfs:label "nitrite_nitrogen" ;
  rdfs:comment "Concentration of nitrite nitrogen in the sample" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:dna_seq_project_name a rdf:Property ;
  rdfs:label "DNA seq project name" ;
  rdfs:range xsd:string .

<http://purl.org/dc/terms/description> a rdf:Property ;
  rdfs:comment "a human-readable description of a thing" , "A brief summary that details the study you're submitted to NMDC" ;
  rdfs:range xsd:string .

nmdc:subsurface_depth a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

<https://w3id.org/mixs/0000426> a rdf:Property ;
  rdfs:label "nitrite" ;
  rdfs:comment "Concentration of nitrite in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000645> a rdf:Property ;
  rdfs:label "average seasonal precipitation" ;
  rdfs:comment "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000751> a rdf:Property ;
  rdfs:label "chemical administration" ;
  rdfs:comment "List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi" ;
  rdfs:range nmdc:ControlledTermValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_organisms a rdf:Property ;
  rdfs:label "RNA expected organisms" ;
  rdfs:comment "List any organisms known or suspected to grow in co-culture, as well as estimated % of the organism in that culture." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000175> a rdf:Property ;
  rdfs:label "bishomohopanol" ;
  rdfs:comment "Concentration of bishomohopanol" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000337> a rdf:Property ;
  rdfs:label "total organic carbon method" ;
  rdfs:comment "Reference or method used in determining total organic carbon" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000752> a rdf:Property ;
  rdfs:label "miscellaneous parameter" ;
  rdfs:comment "Any other measurement performed or parameter collected, that is not listed here" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:technical_reps a rdf:Property ;
  rdfs:label "number technical replicate" ;
  rdfs:comment "If sending technical replicates of the same sample, indicate the replicate count." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000525> a rdf:Property ;
  rdfs:label "total carbon" ;
  rdfs:comment "Total carbon content" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000424> a rdf:Property ;
  rdfs:label "sulfide" ;
  rdfs:comment "Concentration of sulfide in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000327> a rdf:Property ;
  rdfs:label "storage conditions" ;
  rdfs:comment "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0001081> a rdf:Property ;
  rdfs:label "history/tillage" ;
  rdfs:comment "Note method(s) used for tilling" ;
  rdfs:range nmdc:TillageEnum ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_isolate_meth a rdf:Property ;
  rdfs:label "RNA isolation method" ;
  rdfs:comment "Describe the method/protocol/kit used to extract DNA/RNA." ;
  rdfs:range xsd:string .

nmdc:env_package a rdf:Property ;
  rdfs:comment "MIxS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:attribute .

<https://w3id.org/mixs/0000323> a rdf:Property ;
  rdfs:label "water content method" ;
  rdfs:comment "Reference or method used in determining the water content of soil" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000204> a rdf:Property ;
  rdfs:label "organic matter" ;
  rdfs:comment "Concentration of organic matter" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000322> a rdf:Property ;
  rdfs:label "composite design/sieving" ;
  rdfs:comment "Collection design of pooled samples and/or sieve size and amount of sample sieved" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000179> a rdf:Property ;
  rdfs:label "dissolved hydrogen" ;
  rdfs:comment "Concentration of dissolved hydrogen" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:emsl_biosample_identifiers a rdf:Property ;
  rdfs:label "EMSL Biosample Identifiers" ;
  rdfs:comment "A list of identifiers for the biosample from the EMSL database.  This is used to link the biosample, as modeled by NMDC, to the biosample in the planned EMSL NEXUS database." ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:biosample_identifiers .

nmdc:host_name a rdf:Property ;
  rdfs:range xsd:string .

nmdc:start_time_inc a rdf:Property ;
  rdfs:label "incubation start time, GMT" ;
  rdfs:comment "Time the incubation was started. Only relevant for incubation samples." ;
  rdfs:seeAlso <https://w3id.org/mixs/collection_date> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000183> a rdf:Property ;
  rdfs:label "salinity" ;
  rdfs:comment "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000428> a rdf:Property ;
  rdfs:label "sodium" ;
  rdfs:comment "Sodium concentration in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:zinc a rdf:Property ;
  rdfs:label "zinc" ;
  rdfs:comment "Concentration of zinc in the sample" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:gold_biosample_identifiers a rdf:Property ;
  rdfs:comment "Unique identifier for a biosample submitted to GOLD that matches the NMDC submitted biosample" ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:biosample_identifiers .

<https://w3id.org/mixs/0000176> a rdf:Property ;
  rdfs:label "bromide" ;
  rdfs:comment "Concentration of bromide" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_absorb_1 a rdf:Property ;
  rdfs:label "RNA absorbance 260/280" ;
  rdfs:comment "260/280 measurement of RNA sample purity" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000755> a rdf:Property ;
  rdfs:label "sample storage location" ;
  rdfs:comment "Location at which sample was stored, usually name of a specific freezer/room" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:sample_link a rdf:Property ;
  rdfs:label "sample linkage" ;
  rdfs:comment "A unique identifier to assign parent-child, subsample, or sibling samples. This is relevant when a sample or other material was used to generate the new sample." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001080> a rdf:Property ;
  rdfs:label "current land use" ;
  rdfs:comment "Present state of sample site" ;
  rdfs:range nmdc:CurLandUseEnum ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000568> a rdf:Property ;
  rdfs:label "humidity regimen" ;
  rdfs:comment "Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000436> a rdf:Property ;
  rdfs:label "dissolved carbon dioxide" ;
  rdfs:comment "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000103> a rdf:Property ;
  rdfs:label "organism count" ;
  rdfs:comment "Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000001> a rdf:Property ;
  rdfs:label "amount or size of sample collected" ;
  rdfs:comment "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

<https://w3id.org/mixs/0000432> a rdf:Property ;
  rdfs:label "calcium" ;
  rdfs:comment "Concentration of calcium in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000607> a rdf:Property ;
  rdfs:label "aluminum saturation/ extreme unusual properties" ;
  rdfs:comment "The relative abundance of aluminum in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000502> a rdf:Property ;
  rdfs:label "mean peak friction velocity" ;
  rdfs:comment "Measurement of mean peak friction velocity" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000325> a rdf:Property ;
  rdfs:label "pooling of DNA extracts (if done)" ;
  rdfs:comment "Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000750> a rdf:Property ;
  rdfs:label "tidal stage" ;
  rdfs:comment "Stage of tide" ;
  rdfs:range nmdc:TidalStageEnum ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0001225> a rdf:Property ;
  rdfs:label "sample collection method" ;
  rdfs:comment "The method employed for collecting the sample." ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

nmdc:dna_absorb_2 a rdf:Property ;
  rdfs:label "DNA absorbance 260/230" ;
  rdfs:comment "260/230 measurement of DNA sample purity" ;
  rdfs:range xsd:string .

nmdc:mod_date a rdf:Property ;
  rdfs:comment "The last date on which the database information was modified." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000341> a rdf:Property ;
  rdfs:label "salinity method" ;
  rdfs:comment "Reference or method used in determining salinity" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000515> a rdf:Property ;
  rdfs:label "particulate organic carbon" ;
  rdfs:comment "Concentration of particulate organic carbon" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000340> a rdf:Property ;
  rdfs:label "links to additional analysis" ;
  rdfs:comment "Link to additional analysis results performed on the sample" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_seq_project a rdf:Property ;
  rdfs:label "DNA seq project ID" ;
  rdfs:range xsd:string .

nmdc:img_identifiers a rdf:Property ;
  rdfs:label "IMG Identifiers" ;
  rdfs:comment "A list of identifiers that relate the biosample to records in the IMG database." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000647> a rdf:Property ;
  rdfs:label "slope aspect" ;
  rdfs:comment "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). - This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:start_date_inc a rdf:Property ;
  rdfs:label "incubation start date" ;
  rdfs:comment "Date the incubation was started. Only relevant for incubation samples." ;
  rdfs:seeAlso <https://w3id.org/mixs/collection_date> ;
  rdfs:range xsd:string .

nmdc:collection_time a rdf:Property ;
  rdfs:label "collection time, GMT" ;
  rdfs:comment "The time of sampling, either as an instance (single point) or interval." ;
  rdfs:seeAlso <https://w3id.org/mixs/collection_date> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000016> a rdf:Property ;
  rdfs:label "sample material processing" ;
  rdfs:comment "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed." ;
  rdfs:range nmdc:ControlledTermValue ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

nmdc:collection_time_inc a rdf:Property ;
  rdfs:label "incubation collection time, GMT" ;
  rdfs:comment "Time the incubation was harvested/collected/ended. Only relevant for incubation samples." ;
  rdfs:seeAlso <https://w3id.org/mixs/collection_date> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000318> a rdf:Property ;
  rdfs:label "history/crop rotation" ;
  rdfs:comment "Whether or not crop is rotated, and if yes, rotation schedule" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:ecosystem_type a rdf:Property ;
  rdfs:comment "Ecosystem types represent things having common characteristics within the Ecosystem Category. These common characteristics based grouping is still broad but specific to the characteristics of a given environment. Ecosystem type is in position 3/5 in a GOLD path." ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/help> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:gold_path_field .

<https://w3id.org/mixs/0000516> a rdf:Property ;
  rdfs:label "petroleum hydrocarbon" ;
  rdfs:comment "Concentration of petroleum hydrocarbon" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000185> a rdf:Property ;
  rdfs:label "water content" ;
  rdfs:comment "Water content measurement" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000338> a rdf:Property ;
  rdfs:label "total nitrogen content method" ;
  rdfs:comment "Reference or method used in determining the total nitrogen" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000177> a rdf:Property ;
  rdfs:label "chlorophyll" ;
  rdfs:comment "Concentration of chlorophyll" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000331> a rdf:Property ;
  rdfs:label "soil_taxonomic/local classification method" ;
  rdfs:comment "Reference or method used in determining the local soil classification" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000551> a rdf:Property ;
  rdfs:label "air temperature regimen" ;
  rdfs:comment "Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:ecosystem a rdf:Property ;
  rdfs:comment "An ecosystem is a combination of a physical environment (abiotic factors) and all the organisms (biotic factors) that interact with this environment. Ecosystem is in position 1/5 in a GOLD path." ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/help> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:gold_path_field .

nmdc:rna_seq_project_name a rdf:Property ;
  rdfs:label "RNA seq project name" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000162> a rdf:Property ;
  rdfs:label "dissolved organic nitrogen" ;
  rdfs:comment "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000431> a rdf:Property ;
  rdfs:label "magnesium" ;
  rdfs:comment "Concentration of magnesium in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000310> a rdf:Property ;
  rdfs:label "carbon/nitrogen ratio" ;
  rdfs:comment "Ratio of amount or concentrations of carbon to nitrogen" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_concentration a rdf:Property ;
  rdfs:label "RNA concentration in ng/ul" ;
  rdfs:range xsd:string .

nmdc:rna_volume a rdf:Property ;
  rdfs:label "RNA volume in ul" ;
  rdfs:range xsd:string .

nmdc:habitat a rdf:Property ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000113> a rdf:Property ;
  rdfs:label "temperature" ;
  rdfs:comment "Temperature of the sample at the time of sampling." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:environment_field .

<https://w3id.org/mixs/0000646> a rdf:Property ;
  rdfs:label "slope gradient" ;
  rdfs:comment "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000094> a rdf:Property ;
  rdfs:label "altitude" ;
  rdfs:comment "Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:dna_absorb_1 a rdf:Property ;
  rdfs:label "DNA absorbance 260/280" ;
  rdfs:comment "260/280 measurement of DNA sample purity" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000332> a rdf:Property ;
  rdfs:label "soil type" ;
  rdfs:comment "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998).  Multiple terms can be separated by pipes." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000435> a rdf:Property ;
  rdfs:label "density" ;
  rdfs:comment "Density of the sample, which is its mass per unit volume (aka volumetric mass density)" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:project_id a rdf:Property ;
  rdfs:label "project ID" ;
  rdfs:comment "Proposal IDs or names associated with dataset" ;
  rdfs:range xsd:string .

nmdc:rna_sample_name a rdf:Property ;
  rdfs:label "RNA sample name" ;
  rdfs:comment "Give the RNA sample a name that is meaningful to you. Sample names must be unique across all JGI projects and contain a-z, A-Z, 0-9, - and _ only." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000182> a rdf:Property ;
  rdfs:label "redox potential" ;
  rdfs:comment "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_concentration a rdf:Property ;
  rdfs:label "DNA concentration in ng/ul" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000026> a rdf:Property ;
  rdfs:label "source material identifier" ;
  rdfs:comment "A globally unique identifier assigned to the biological sample." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

nmdc:soluble_iron_micromol a rdf:Property ;
  rdfs:range xsd:string .

nmdc:rna_seq_project a rdf:Property ;
  rdfs:label "RNA seq project ID" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001001> a rdf:Property ;
  rdfs:label "pH" ;
  rdfs:comment "Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid" ;
  rdfs:range xsd:double ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000530> a rdf:Property ;
  rdfs:label "total nitrogen content" ;
  rdfs:comment "Total nitrogen content of the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_sample_format a rdf:Property ;
  rdfs:label "RNA sample format" ;
  rdfs:comment "Solution in which the RNA sample has been suspended" ;
  rdfs:range nmdc:RnaSampleFormatEnum .

<https://w3id.org/mixs/0000642> a rdf:Property ;
  rdfs:label "mean annual temperature" ;
  rdfs:comment "Mean annual temperature" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_container_id a rdf:Property ;
  rdfs:label "DNA container label" ;
  rdfs:range xsd:string .

nmdc:dna_seq_project_pi a rdf:Property ;
  rdfs:label "DNA seq project PI" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001083> a rdf:Property ;
  rdfs:label "soil_taxonomic/FAO classification" ;
  rdfs:comment "Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups" ;
  rdfs:range nmdc:FaoClassEnum ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:add_date a rdf:Property ;
  rdfs:comment "The date on which the information was added to the database." ;
  rdfs:range xsd:string .

nmdc:micro_biomass_c_meth a rdf:Property ;
  rdfs:label "microbial biomass carbon method" ;
  rdfs:comment "Reference or method used in determining microbial biomass carbon" ;
  rdfs:seeAlso <https://w3id.org/mixs/micro_biomass_meth> ;
  rdfs:range xsd:string .

nmdc:dna_dnase a rdf:Property ;
  rdfs:label "DNase treatment DNA" ;
  rdfs:range nmdc:DnaDnaseEnum .

<https://w3id.org/mixs/0000430> a rdf:Property ;
  rdfs:label "potassium" ;
  rdfs:comment "Concentration of potassium in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000180> a rdf:Property ;
  rdfs:label "phaeopigments" ;
  rdfs:comment "Concentration of phaeopigments; can include multiple phaeopigments" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000634> a rdf:Property ;
  rdfs:label "total depth of water column" ;
  rdfs:comment "Measurement of total depth of water column" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000205> a rdf:Property ;
  rdfs:label "organic nitrogen" ;
  rdfs:comment "Concentration of organic nitrogen" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000744> a rdf:Property ;
  rdfs:label "total dissolved nitrogen" ;
  rdfs:comment "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000172> a rdf:Property ;
  rdfs:label "aminopeptidase activity" ;
  rdfs:comment "Measurement of aminopeptidase activity" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_sample_name a rdf:Property ;
  rdfs:label "DNA sample name" ;
  rdfs:comment "Give the DNA sample a name that is meaningful to you. Sample names must be unique across all JGI projects and contain a-z, A-Z, 0-9, - and _ only." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000735> a rdf:Property ;
  rdfs:label "size-fraction lower threshold" ;
  rdfs:comment "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000116> a rdf:Property ;
  rdfs:label "sample storage duration" ;
  rdfs:comment "Duration for which the sample was stored" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000533> a rdf:Property ;
  rdfs:label "total organic carbon" ;
  rdfs:comment "Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:isotope_exposure a rdf:Property ;
  rdfs:label "isotope exposure/addition" ;
  rdfs:comment "List isotope exposure or addition applied to your sample." ;
  rdfs:seeAlso <https://w3id.org/mixs/chem_administration> ;
  rdfs:range xsd:string .

nmdc:embargoed a rdf:Property ;
  rdfs:comment "If true, the data are embargoed and not available for public access." ;
  rdfs:range xsd:boolean .

nmdc:lbc_thirty a rdf:Property ;
  rdfs:label "lime buffer capacity (at 30 minutes)" ;
  rdfs:comment "lime buffer capacity, determined after 30 minute incubation" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> , <https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:ncbi_taxonomy_name a rdf:Property ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000429> a rdf:Property ;
  rdfs:label "chloride" ;
  rdfs:comment "Concentration of chloride in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000312> a rdf:Property ;
  rdfs:label "current vegetation" ;
  rdfs:comment "Vegetation classification from one or more standard classification systems, or agricultural crop" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:insdc_biosample_identifiers a rdf:Property ;
  rdfs:comment "identifiers for corresponding sample in INSDC" ;
  rdfs:seeAlso <https://github.com/bioregistry/bioregistry/issues/108> , <https://www.ebi.ac.uk/biosamples/> , <https://www.ncbi.nlm.nih.gov/biosample> , <https://www.ddbj.nig.ac.jp/biosample/index-e.html> ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:biosample_identifiers .

<https://w3id.org/mixs/0000018> a rdf:Property ;
  rdfs:label "depth" ;
  rdfs:comment "The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples." ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:igsn_biosample_identifiers a rdf:Property ;
  rdfs:label "IGSN Biosample Identifiers" ;
  rdfs:comment "A list of identifiers for the biosample from the IGSN database." ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:biosample_identifiers .

<https://w3id.org/mixs/0000014> a rdf:Property ;
  rdfs:label "environmental medium" ;
  rdfs:comment "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)." ;
  rdfs:range nmdc:ControlledIdentifiedTermValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:specific_ecosystem a rdf:Property ;
  rdfs:comment "Specific ecosystems represent specific features of the environment like aphotic zone in an ocean or gastric mucosa within a host digestive system. Specific ecosystem is in position 5/5 in a GOLD path." ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/help> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:gold_path_field .

nmdc:rna_cont_well a rdf:Property ;
  rdfs:label "RNA plate position" ;
  rdfs:range xsd:string .

nmdc:ecosystem_subtype a rdf:Property ;
  rdfs:comment "Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path." ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/help> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:gold_path_field .

nmdc:sample_shipped a rdf:Property ;
  rdfs:label "sample shipped amount" ;
  rdfs:comment "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent to EMSL." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001085> a rdf:Property ;
  rdfs:label "drainage classification" ;
  rdfs:comment "Drainage classification from a standard system such as the USDA system" ;
  rdfs:range nmdc:DrainageClassEnum ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000425> a rdf:Property ;
  rdfs:label "nitrate" ;
  rdfs:comment "Concentration of nitrate in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000433> a rdf:Property ;
  rdfs:label "dissolved organic carbon" ;
  rdfs:comment "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:alternative_identifiers a rdf:Property ;
  rdfs:comment "Unique identifier for a biosample submitted to additional resources. Matches the entity that has been submitted to NMDC" , "A list of alternative identifiers for the entity." , "Unique identifier for a study submitted to additional resources. Matches that which has been submitted to NMDC" ;
  rdfs:range xsd:string .

nmdc:salinity_category a rdf:Property ;
  rdfs:comment "Categorical description of the sample's salinity. Examples: halophile, halotolerant, hypersaline, huryhaline" ;
  rdfs:seeAlso <https://github.com/microbiomedata/nmdc-metadata/pull/297> ;
  rdfs:range xsd:string .

nmdc:collected_from a rdf:Property ;
  rdfs:comment "The Site from which a Biosample was collected" ;
  rdfs:domain nmdc:Biosample ;
  rdfs:range nmdc:FieldResearchSite .

nmdc:sample_collection_site a rdf:Property ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000011> a rdf:Property ;
  rdfs:label "collection date" ;
  rdfs:comment "The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant" ;
  rdfs:range nmdc:TimestampValue ;
  rdfs:subPropertyOf nmdc:environment_field .

nmdc:experimental_factor_other a rdf:Property ;
  rdfs:label "experimental factor- other" ;
  rdfs:comment "Other details about your sample that you feel can't be accurately represented in the available columns." ;
  rdfs:seeAlso <https://w3id.org/mixs/experimental_factor> , <https://w3id.org/mixs/additional_info> ;
  rdfs:range xsd:string .

nmdc:micro_biomass_n_meth a rdf:Property ;
  rdfs:label "microbial biomass nitrogen method" ;
  rdfs:comment "Reference or method used in determining microbial biomass nitrogen" ;
  rdfs:seeAlso <https://w3id.org/mixs/micro_biomass_meth> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000181> a rdf:Property ;
  rdfs:label "phospholipid fatty acid" ;
  rdfs:comment "Concentration of phospholipid fatty acids; can include multiple values" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:proposal_rna a rdf:Property ;
  rdfs:label "RNA proposal ID" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001040> a rdf:Property ;
  rdfs:label "climate environment" ;
  rdfs:comment "Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:microbial_biomass_c a rdf:Property ;
  rdfs:label "microbial biomass carbon" ;
  rdfs:comment "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ;
  rdfs:seeAlso <https://w3id.org/mixs/microbial_biomass> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000591> a rdf:Property ;
  rdfs:label "watering regimen" ;
  rdfs:comment "Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000119> a rdf:Property ;
  rdfs:label "dissolved oxygen" ;
  rdfs:comment "Concentration of dissolved oxygen" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dnase_rna a rdf:Property ;
  rdfs:label "DNase treated" ;
  rdfs:range nmdc:DnaseRnaEnum .

nmdc:rna_collect_site a rdf:Property ;
  rdfs:label "RNA collection site" ;
  rdfs:comment "Provide information on the site your RNA sample was collected from" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000173> a rdf:Property ;
  rdfs:label "bacterial carbon production" ;
  rdfs:comment "Measurement of bacterial carbon production" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_samp_id a rdf:Property ;
  rdfs:label "DNA sample ID" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000343> a rdf:Property ;
  rdfs:label "heavy metals method/ extreme unusual properties" ;
  rdfs:comment "Reference or method used in determining heavy metals" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000643> a rdf:Property ;
  rdfs:label "mean seasonal temperature" ;
  rdfs:comment "Mean seasonal temperature" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_cont_well a rdf:Property ;
  rdfs:label "DNA plate position" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000639> a rdf:Property ;
  rdfs:label "history/agrochemical additions" ;
  rdfs:comment "Addition of fertilizers, pesticides, etc. - amount and time of applications" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_container_id a rdf:Property ;
  rdfs:label "RNA container label" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000250> a rdf:Property ;
  rdfs:label "host taxid" ;
  rdfs:comment "NCBI taxon id of the host, e.g. 9606" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_organisms a rdf:Property ;
  rdfs:label "DNA expected organisms" ;
  rdfs:comment "List any organisms known or suspected to grow in co-culture, as well as estimated % of the organism in that culture." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001320> a rdf:Property ;
  rdfs:label "Taxonomy ID of DNA sample" ;
  rdfs:comment "NCBI taxon id of the sample.  Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:investigation_field .

<https://w3id.org/mixs/0000423> a rdf:Property ;
  rdfs:label "sulfate" ;
  rdfs:comment "Concentration of sulfate in the sample" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000558> a rdf:Property ;
  rdfs:label "gaseous environment" ;
  rdfs:comment "Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

<https://w3id.org/mixs/0000330> a rdf:Property ;
  rdfs:label "soil_taxonomic/local classification" ;
  rdfs:comment "Soil classification based on local soil classification system" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:rna_samp_id a rdf:Property ;
  rdfs:label "RNA sample ID" ;
  rdfs:range xsd:string .

nmdc:non_microb_biomass_method a rdf:Property ;
  rdfs:label "non-microbial biomass method" ;
  rdfs:comment "Reference or method used in determining biomass" ;
  rdfs:seeAlso <https://w3id.org/mixs/microbial_biomass> ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000117> a rdf:Property ;
  rdfs:label "total phosphorus" ;
  rdfs:comment "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:dna_volume a rdf:Property ;
  rdfs:label "DNA volume in ul" ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0001107> a rdf:Property ;
  rdfs:label "sample name" ;
  rdfs:comment "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name." ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:investigation_field .

<https://w3id.org/mixs/0000754> a rdf:Property ;
  rdfs:label "perturbation" ;
  rdfs:comment "Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:manganese a rdf:Property ;
  rdfs:label "manganese" ;
  rdfs:comment "Concentration of manganese in the sample" ;
  rdfs:seeAlso <https://www.ornl.gov/content/bio-scales-0> ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:MaterialEntity a rdfs:Class ;
  rdfs:label "Material Entity" ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:AnalyticalSample a rdfs:Class ;
  rdfs:label "Analytical Sample" ;
  rdfs:subClassOf nmdc:MaterialEntity .

nmdc:GeolocationValue a rdfs:Class ;
  rdfs:comment "A normalized value for a location on the earth's surface" ;
  rdfs:subClassOf nmdc:AttributeValue .

<http://www.w3.org/2003/01/geo/wgs84_pos#lat> a rdf:Property ;
  rdfs:comment "latitude" ;
  rdfs:domain nmdc:GeolocationValue ;
  rdfs:range xsd:decimal .

<http://www.w3.org/2003/01/geo/wgs84_pos#long> a rdf:Property ;
  rdfs:comment "longitude" ;
  rdfs:domain nmdc:GeolocationValue ;
  rdfs:range xsd:decimal .

nmdc:ReadBasedTaxonomyAnalysisActivity a rdfs:Class ;
  rdfs:label "Read based analysis activity" ;
  rdfs:comment "A workflow execution activity that performs taxonomy classification using sequencing reads" ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:Agent a rdfs:Class ;
  rdfs:comment "a provence-generating agent" .

nmdc:acted_on_behalf_of a rdf:Property ;
  rdfs:range nmdc:Agent .

nmdc:MetagenomeAssembly a rdfs:Class ;
  rdfs:comment "A workflow execution activity that converts sequencing reads into an assembled metagenome." ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:gc_std a rdf:Property ;
  rdfs:comment "Standard deviation of GC content of all contigs." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_n_90 a rdf:Property ;
  rdfs:comment "Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_l_90 a rdf:Property ;
  rdfs:comment "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:num_aligned_reads a rdf:Property ;
  rdfs:comment "The sequence count number of input reads aligned to assembled contigs." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_powsum a rdf:Property ;
  rdfs:comment "Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:gap_pct a rdf:Property ;
  rdfs:comment "The gap size percentage of all scaffolds." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_logsum a rdf:Property ;
  rdfs:comment "Maximum contig length." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_max a rdf:Property ;
  rdfs:comment "Maximum contig length." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:num_input_reads a rdf:Property ;
  rdfs:comment "The sequence count number of input reads for assembly." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_l_gt_50_k a rdf:Property ;
  rdfs:comment "Total size in bp of all scaffolds greater than 50 KB." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_bp a rdf:Property ;
  rdfs:comment "Total size in bp of all scaffolds." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_n_90 a rdf:Property ;
  rdfs:comment "Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaffolds a rdf:Property ;
  rdfs:comment "Total sequence count of all scaffolds." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_l_90 a rdf:Property ;
  rdfs:comment "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_logsum a rdf:Property ;
  rdfs:comment "The sum of the (length*log(length)) of all scaffolds, times some constant.  Increase the contiguity, the score will increase" ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_l_50 a rdf:Property ;
  rdfs:comment "Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_l_50 a rdf:Property ;
  rdfs:comment "Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_n_gt_50_k a rdf:Property ;
  rdfs:comment "Total sequence count of scaffolds greater than 50 KB." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_n_50 a rdf:Property ;
  rdfs:comment "Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:contigs a rdf:Property ;
  rdfs:comment "The sum of the (length*log(length)) of all contigs, times some constant.  Increase the contiguity, the score will increase" ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:insdc_assembly_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:assembly_identifiers .

nmdc:gc_avg a rdf:Property ;
  rdfs:comment "Average of GC content of all contigs." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:contig_bp a rdf:Property ;
  rdfs:comment "Total size in bp of all contigs." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:asm_score a rdf:Property ;
  rdfs:comment "A score for comparing metagenomic assembly quality from same sample." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:ctg_powsum a rdf:Property ;
  rdfs:comment "Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_max a rdf:Property ;
  rdfs:comment "Maximum scaffold length." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_n_50 a rdf:Property ;
  rdfs:comment "Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:scaf_pct_gt_50_k a rdf:Property ;
  rdfs:comment "Total sequence size percentage of scaffolds greater than 50 KB." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:metagenome_assembly_parameter .

nmdc:MetatranscriptomeAnnotationActivity a rdfs:Class ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:gold_analysis_project_identifiers a rdf:Property ;
  rdfs:comment "identifiers for corresponding analysis project in GOLD" ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:analysis_identifiers .

nmdc:OntologyClass a rdfs:Class ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:QuantityValue a rdfs:Class ;
  rdfs:comment "A simple quantity, e.g. 2cm" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:has_numeric_value a rdf:Property ;
  rdfs:comment "The number part of the quantity" , "Links a quantity value to a number" ;
  rdfs:range xsd:double , xsd:float .

nmdc:has_minimum_numeric_value a rdf:Property ;
  rdfs:comment "The minimum value part, expressed as number, of the quantity value when the value covers a range." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:has_numeric_value .

nmdc:has_maximum_numeric_value a rdf:Property ;
  rdfs:comment "The maximum value part, expressed as number, of the quantity value when the value covers a range." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:has_numeric_value .

nmdc:has_unit a rdf:Property ;
  rdfs:comment "The unit of the quantity" ;
  rdfs:range xsd:string .

nmdc:ControlledIdentifiedTermValue a rdfs:Class ;
  rdfs:comment "A controlled term or class from an ontology, requiring the presence of term with an id" ;
  rdfs:subClassOf nmdc:ControlledTermValue .

nmdc:term a rdf:Property ;
  rdfs:comment "pointer to an ontology class" ;
  rdfs:domain nmdc:ControlledTermValue ;
  rdfs:range nmdc:OntologyClass .

nmdc:EnvironmentalMaterialTerm a rdfs:Class ;
  rdfs:subClassOf nmdc:OntologyClass .

nmdc:IntegerValue a rdfs:Class ;
  rdfs:comment "A value that is an integer" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:ReadQcAnalysisActivity a rdfs:Class ;
  rdfs:label "Read quality control analysis activity" ;
  rdfs:comment "A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal" ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:input_read_bases a rdf:Property ;
  rdfs:comment "TODO" ;
  rdfs:range xsd:float .

nmdc:output_read_bases a rdf:Property ;
  rdfs:comment "TODO" ;
  rdfs:range xsd:float .

nmdc:input_base_count a rdf:Property ;
  rdfs:comment "The nucleotide base count number of input reads for QC analysis." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:read_qc_analysis_statistic .

nmdc:input_read_count a rdf:Property ;
  rdfs:comment "The sequence count number of input reads for QC analysis." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:read_qc_analysis_statistic .

nmdc:output_base_count a rdf:Property ;
  rdfs:comment "After QC analysis nucleotide base count number." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:read_qc_analysis_statistic .

nmdc:output_read_count a rdf:Property ;
  rdfs:comment "After QC analysis sequence count number." ;
  rdfs:range xsd:float ;
  rdfs:subPropertyOf nmdc:read_qc_analysis_statistic .

nmdc:AttributeValue a rdfs:Class ;
  rdfs:comment "The value for any value of a attribute for a sample. This object can hold both the un-normalized atomic value and the structured value" .

nmdc:NamedThing a rdfs:Class ;
  rdfs:comment "a databased entity or concept/class" .

nmdc:MetatranscriptomeAssembly a rdfs:Class ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:ImageValue a rdfs:Class ;
  rdfs:comment "An attribute value representing an image." ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:display_order a rdf:Property ;
  rdfs:comment "When rendering information, this attribute to specify the order in which the information should be rendered." ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:url a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:attribute .

<http://purl.obolibrary.org/obo/OBI_/0000011> a rdfs:Class ;
  rdfs:label "Planned Process" ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:has_inputs a rdf:Property ;
  rdfs:domain <http://purl.obolibrary.org/obo/OBI_/0000011> ;
  rdfs:range nmdc:NamedThing , nmdc:Site .

nmdc:has_outputs a rdf:Property ;
  rdfs:domain <http://purl.obolibrary.org/obo/OBI_/0000011> ;
  rdfs:range nmdc:NamedThing , nmdc:Biosample .

nmdc:participating_agent a rdf:Property ;
  rdfs:domain <http://purl.obolibrary.org/obo/OBI_/0000011> ;
  rdfs:range nmdc:Agent .

nmdc:FieldResearchSite a rdfs:Class ;
  rdfs:label "Field Research Site" ;
  rdfs:comment "A site, outside of a laboratory, from which biosamples may be collected." ;
  rdfs:subClassOf nmdc:Site .

nmdc:MetagenomeSequencingActivity a rdfs:Class ;
  rdfs:label "Metagenome sequencing activity" ;
  rdfs:comment "Initial sequencing activity that precedes any analysis.  This activity has output(s) that are the raw sequencing data." ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:ChemicalEntity a rdfs:Class ;
  rdfs:comment "An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states" ;
  rdfs:seeAlso <https://bioconductor.org/packages/devel/data/annotation/vignettes/metaboliteIDmapping/inst/doc/metaboliteIDmapping.html> ;
  rdfs:subClassOf nmdc:OntologyClass .

nmdc:GeneProduct a rdfs:Class ;
  rdfs:comment "A molecule encoded by a gene that has an evolved function" ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:Study a rdfs:Class ;
  rdfs:comment "A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects." ;
  rdfs:subClassOf nmdc:NamedThing .

<http://www.w3.org/ns/prov#qualifiedAssociation> a rdf:Property ;
  rdfs:comment "This slot links a study to a credit association.  The credit association will be linked to a person value and to a CRediT Contributor Roles term. Overall semantics: person should get credit X for their participation in the study" ;
  rdfs:domain nmdc:Study ;
  rdfs:range <http://www.w3.org/ns/prov#Association> .

nmdc:emsl_proposal_doi a rdf:Property ;
  rdfs:label "EMSL Proposal DOI" ;
  rdfs:comment "The DOI for the EMSL awarded study that relates to the NMDC submitted study" ;
  rdfs:range xsd:string .

nmdc:websites a rdf:Property ;
  rdfs:comment "A list of websites that are associated with the entity." ;
  rdfs:range xsd:string .

nmdc:mgnify_project_identifiers a rdf:Property ;
  rdfs:comment "identifiers for corresponding project in MGnify" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:insdc_identifiers .

nmdc:alternative_descriptions a rdf:Property ;
  rdfs:comment "A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific." ;
  rdfs:range xsd:string .

nmdc:study_image a rdf:Property ;
  rdfs:comment "Links a study to one or more images." ;
  rdfs:domain nmdc:Study ;
  rdfs:range nmdc:ImageValue .

nmdc:doi a rdf:Property ;
  rdfs:comment "The dataset citation for this study" ;
  rdfs:range nmdc:AttributeValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:relevant_protocols a rdf:Property ;
  rdfs:range xsd:string .

nmdc:alternative_names a rdf:Property ;
  rdfs:comment "A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific." ;
  rdfs:range xsd:string .

nmdc:emsl_project_identifier a rdf:Property ;
  rdfs:comment "The EMSL project ID that relates to the NMDC submitted study" ;
  rdfs:range xsd:string .

nmdc:abstract a rdf:Property ;
  rdfs:comment "The abstract of manuscript/grant associated with the entity; i.e., a summary of the resource." ;
  rdfs:range xsd:string .

nmdc:alternative_titles a rdf:Property ;
  rdfs:comment "A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific." ;
  rdfs:range xsd:string .

nmdc:related_identifiers a rdf:Property ;
  rdfs:label "Related Identifiers" ;
  rdfs:comment "Unique identifier for a study submitted to additional resources. Similar, but not necessarily identical to that which has been submitted to NMDC" ;
  rdfs:range xsd:string .

nmdc:publications a rdf:Property ;
  rdfs:comment "A list of publications that are associated with the entity. The publications SHOULD be given using an identifier, such as a DOI or Pubmed ID, if possible." ;
  rdfs:range xsd:string .

nmdc:objective a rdf:Property ;
  rdfs:comment "The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract." ;
  rdfs:range xsd:string .

nmdc:insdc_bioproject_identifiers a rdf:Property ;
  rdfs:comment "Unique identifier for a bioproject submitted to INSDC that relates to the NMDC submitted study." ;
  rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/bioproject/> , <https://www.ddbj.nig.ac.jp/bioproject/index-e.html> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:insdc_identifiers .

nmdc:gold_study_identifiers a rdf:Property ;
  rdfs:label "GOLD Study Identifiers" ;
  rdfs:comment "identifiers for corresponding project(s) in GOLD" ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/studies> ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:study_identifiers .

nmdc:emsl_proposal_identifier a rdf:Property ;
  rdfs:label "EMSL Proposal Identifier" ;
  rdfs:comment "The proposal number assigned to the EMSL awarded study that relates to that which is represented in NMDC." ;
  rdfs:range xsd:string .

nmdc:principal_investigator a rdf:Property ;
  rdfs:comment "Principal Investigator who led the study and/or generated the dataset." ;
  rdfs:range nmdc:PersonValue ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:ess_dive_datasets a rdf:Property ;
  rdfs:comment "List of ESS-DIVE dataset DOIs" ;
  rdfs:range xsd:string .

nmdc:notes a rdf:Property ;
  rdfs:comment "from study class" ;
  rdfs:range xsd:string .

nmdc:title a rdf:Property ;
  rdfs:comment "A name given to the entity that differs from the name/label programmatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study." ;
  rdfs:range xsd:string .

nmdc:massive_study_identifiers a rdf:Property ;
  rdfs:comment "identifiers for corresponding study in MASSIVE" ;
  rdfs:seeAlso <https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=83574f41458a4b259621d5c32a4d82f9> ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:massive_identifiers , nmdc:study_identifiers .

nmdc:funding_sources a rdf:Property ;
  rdfs:range xsd:string .

<http://purl.obolibrary.org/obo/OBI_/0000744> a rdfs:Class ;
  rdfs:label "Material sampling activity" .

nmdc:material_output a rdf:Property ;
  rdfs:label "material output" ;
  rdfs:range nmdc:MaterialSample .

nmdc:sampling_method a rdf:Property ;
  rdfs:label "sampling method" ;
  rdfs:range nmdc:SamplingMethodEnum .

nmdc:collected_into a rdf:Property ;
  rdfs:label "collected into" ;
  rdfs:range nmdc:MaterialContainer .

nmdc:biosample_input a rdf:Property ;
  rdfs:label "biosample input" ;
  rdfs:range nmdc:Biosample .

nmdc:amount_collected a rdf:Property ;
  rdfs:label "amount collected" ;
  rdfs:range nmdc:QuantityValue .

nmdc:NomAnalysisActivity a rdfs:Class ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:MetaproteomicsAnalysisActivity a rdfs:Class ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:Database a rdfs:Class ;
  rdfs:comment "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest" .

nmdc:date_created a rdf:Property ;
  rdfs:comment "TODO" ;
  rdfs:range xsd:string .

nmdc:metagenome_assembly_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of metagenome assembly activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MetagenomeAssembly ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:metabolomics_analysis_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of metabolomics analysis activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MetabolomicsAnalysisActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:genome_feature_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of all features" ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:GenomeFeature ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:nom_analysis_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of natural organic matter (NOM) analysis activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:NomAnalysisActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:data_object_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of data objects within it." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:DataObject ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:metagenome_sequencing_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of metagenome sequencing activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MetagenomeSequencingActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:read_based_taxonomy_analysis_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of read based analysis activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:ReadBasedTaxonomyAnalysisActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of workflow activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:WorkflowExecutionActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:etl_software_version a rdf:Property ;
  rdfs:comment "TODO" ;
  rdfs:range xsd:string .

nmdc:metaproteomics_analysis_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of metaproteomics analysis activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MetaproteomicsAnalysisActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:biosample_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of samples within it." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:Biosample ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:omics_processing_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of omics processings within it." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:OmicsProcessing ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:material_sampling_activity_set a rdf:Property ;
  rdfs:label "material sampling activity set" ;
  rdfs:range <http://purl.obolibrary.org/obo/OBI_/0000744> .

nmdc:study_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of studies within it." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:Study ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:read_qc_analysis_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of read QC analysis activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:ReadQcAnalysisActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:dissolving_activity_set a rdf:Property ;
  rdfs:label "dissolving activity set" ;
  rdfs:range <http://purl.obolibrary.org/obo/CHMO_/0002773> .

nmdc:functional_annotation_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of all functional annotations" ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:FunctionalAnnotation ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:metatranscriptome_activity_set a rdf:Property ;
  rdfs:comment "TODO" ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MetatranscriptomeActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:material_sample_set a rdf:Property ;
  rdfs:label "material sample set" ;
  rdfs:range nmdc:MaterialSample .

nmdc:collecting_biosamples_from_site_set a rdf:Property ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:CollectingBiosamplesFromSite .

nmdc:reaction_activity_set a rdf:Property ;
  rdfs:range nmdc:ReactionActivity .

nmdc:field_research_site_set a rdf:Property ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:FieldResearchSite .

nmdc:metagenome_annotation_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of metagenome annotation activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MetagenomeAnnotationActivity ;
  rdfs:subPropertyOf nmdc:object_set .

nmdc:mags_activity_set a rdf:Property ;
  rdfs:comment "This property links a database object to the set of MAGs analysis activities." ;
  rdfs:domain nmdc:Database ;
  rdfs:range nmdc:MagsAnalysisActivity ;
  rdfs:subPropertyOf nmdc:object_set .

<http://purl.obolibrary.org/obo/CHMO_/0002773> a rdfs:Class ;
  rdfs:label "Dissolving activity" .

nmdc:dissolution_reagent a rdf:Property ;
  rdfs:label "dissolution reagent" ;
  rdfs:range nmdc:SolventEnum .

nmdc:dissolved_in a rdf:Property ;
  rdfs:label "dissolved in" ;
  rdfs:range nmdc:MaterialContainer .

nmdc:material_input a rdf:Property ;
  rdfs:label "material input" ;
  rdfs:range nmdc:MaterialSample .

nmdc:dissolution_aided_by a rdf:Property ;
  rdfs:label "dissolution aided by" ;
  rdfs:range nmdc:LabDevice .

nmdc:dissolution_volume a rdf:Property ;
  rdfs:label "dissolution volume" ;
  rdfs:range nmdc:QuantityValue .

nmdc:MaterialSample a rdfs:Class ;
  rdfs:label "Material sample" ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:Pathway a rdfs:Class ;
  rdfs:comment "A pathway is a sequence of steps/reactions carried out by an organism or community of organisms" ;
  rdfs:subClassOf nmdc:FunctionalAnnotationTerm .

nmdc:Activity a rdfs:Class ;
  rdfs:comment "a provence-generating activity" .

nmdc:ReactionActivity a rdfs:Class ;
  rdfs:label "Reaction activity" .

nmdc:reaction_aided_by a rdf:Property ;
  rdfs:label "reaction aided by" ;
  rdfs:range nmdc:LabDevice .

nmdc:reaction_temperature a rdf:Property ;
  rdfs:range xsd:string .

nmdc:reaction_time a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:TextValue a rdfs:Class ;
  rdfs:comment "A basic string value" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:language a rdf:Property ;
  rdfs:comment "Should use ISO 639-1 code e.g. \"en\", \"fr\"" ;
  rdfs:range xsd:language .

nmdc:Reaction a rdfs:Class ;
  rdfs:comment "An individual biochemical transformation carried out by a functional unit of an organism, in which a collection of substrates are transformed into a collection of products. Can also represent transporters" ;
  rdfs:subClassOf nmdc:FunctionalAnnotationTerm .

nmdc:MaterialContainer a rdfs:Class ;
  rdfs:label "Material container" .

nmdc:container_size a rdf:Property ;
  rdfs:label "container size" ;
  rdfs:range nmdc:QuantityValue .

nmdc:container_type a rdf:Property ;
  rdfs:label "container type" ;
  rdfs:range nmdc:ContainerTypeEnum .

nmdc:BiosampleProcessing a rdfs:Class ;
  rdfs:comment "A process that takes one or more biosamples as inputs and generates one or as outputs. Examples of outputs include samples cultivated from another sample or data objects created by instruments runs." ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:MetaboliteQuantification a rdfs:Class ;
  rdfs:comment "This is used to link a metabolomics analysis workflow to a specific metabolite" .

nmdc:PersonValue a rdfs:Class ;
  rdfs:comment "An attribute value representing a person" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:orcid a rdf:Property ;
  rdfs:comment "The ORCID of a person." ;
  rdfs:domain nmdc:PersonValue ;
  rdfs:range xsd:string .

<http://schema.org/email> a rdf:Property ;
  rdfs:comment "An email address for an entity such as a person. This should be the primary email address used." ;
  rdfs:range xsd:string .

nmdc:profile_image_url a rdf:Property ;
  rdfs:comment "A url that points to an image of a person." ;
  rdfs:domain nmdc:PersonValue ;
  rdfs:range xsd:string .

nmdc:Person a rdfs:Class ;
  rdfs:comment "represents a person, such as a researcher" ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:MetagenomeAnnotationActivity a rdfs:Class ;
  rdfs:comment "A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs" ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:CollectingBiosamplesFromSite a rdfs:Class ;
  rdfs:label "Collecting Biosamples From Site" ;
  rdfs:subClassOf <http://purl.obolibrary.org/obo/OBI_/0000011> .

nmdc:ProteinQuantification a rdfs:Class ;
  rdfs:comment "This is used to link a metaproteomics analysis workflow to a specific protein" .

nmdc:MagBin a rdfs:Class .

nmdc:num_23_s a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:gtdbtk_species a rdf:Property ;
  rdfs:range xsd:string .

nmdc:gtdbtk_order a rdf:Property ;
  rdfs:range xsd:string .

nmdc:members_id a rdf:Property ;
  rdfs:range xsd:string .

nmdc:completeness a rdf:Property ;
  rdfs:range xsd:float .

nmdc:gtdbtk_family a rdf:Property ;
  rdfs:range xsd:string .

nmdc:total_bases a rdf:Property ;
  rdfs:range xsd:string .

nmdc:num_16_s a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:bin_quality a rdf:Property ;
  rdfs:range xsd:string .

nmdc:bin_name a rdf:Property ;
  rdfs:range xsd:string .

nmdc:num_5_s a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:contamination a rdf:Property ;
  rdfs:range xsd:float .

nmdc:gtdbtk_domain a rdf:Property ;
  rdfs:range xsd:string .

nmdc:gtdbtk_genus a rdf:Property ;
  rdfs:range xsd:string .

nmdc:gene_count a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:gtdbtk_class a rdf:Property ;
  rdfs:range xsd:string .

nmdc:number_of_contig a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:gtdbtk_phylum a rdf:Property ;
  rdfs:range xsd:string .

nmdc:num_t_rna a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:FunctionalAnnotationTerm a rdfs:Class ;
  rdfs:comment "Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex)." ;
  rdfs:subClassOf nmdc:OntologyClass .

nmdc:UrlValue a rdfs:Class ;
  rdfs:comment "A value that is a string that conforms to URL syntax" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:DataObject a rdfs:Class ;
  rdfs:comment "An object that primarily consists of symbols that represent information.   Files, records, and omics data are examples of data objects." ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:file_size_bytes a rdf:Property ;
  rdfs:comment "Size of the file in bytes" ;
  rdfs:range xsd:long ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:data_object_type a rdf:Property ;
  rdfs:comment "The type of file represented by the data object." ;
  rdfs:range nmdc:FileTypeEnum .

nmdc:compression_type a rdf:Property ;
  rdfs:comment "If provided, specifies the compression type" ;
  rdfs:range xsd:string .

nmdc:md_5_checksum a rdf:Property ;
  rdfs:comment "MD5 checksum of file (pre-compressed)" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:TimestampValue a rdfs:Class ;
  rdfs:comment "A value that is a timestamp. The range should be ISO-8601" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:GenomeFeature a rdfs:Class ;
  rdfs:comment "A feature localized to an interval along a genome" ;
  rdfs:seeAlso <https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md> .

nmdc:WorkflowExecutionActivity a rdfs:Class ;
  rdfs:comment "Represents an instance of an execution of a particular workflow" ;
  rdfs:subClassOf nmdc:Activity .

nmdc:Site a rdfs:Class ;
  rdfs:label "Site" ;
  rdfs:subClassOf nmdc:MaterialEntity .

nmdc:OrthologyGroup a rdfs:Class ;
  rdfs:comment "A set of genes or gene products in which all members are orthologous" ;
  rdfs:subClassOf nmdc:FunctionalAnnotationTerm .

nmdc:Instrument a rdfs:Class ;
  rdfs:comment "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent[OBI]." ;
  rdfs:subClassOf nmdc:NamedThing .

nmdc:ReactionParticipant a rdfs:Class ;
  rdfs:comment "Instances of this link a reaction to a chemical entity participant" .

<http://www.w3.org/ns/prov#Association> a rdfs:Class ;
  rdfs:comment "This class supports binding associated researchers to studies. There will be at least a slot for a CRediT Contributor Role (https://casrai.org/credit/) and for a person value Specifically see the associated researchers tab on the NMDC_SampleMetadata-V4_CommentsForUpdates at https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0" .

<http://www.w3.org/ns/prov#agent> a rdf:Property ;
  rdfs:domain <http://www.w3.org/ns/prov#Association> ;
  rdfs:range nmdc:PersonValue .

<http://www.w3.org/ns/prov#hadRole> a rdf:Property ;
  rdfs:domain <http://www.w3.org/ns/prov#Association> ;
  rdfs:range nmdc:CreditEnum .

nmdc:applied_roles a rdf:Property ;
  rdfs:domain <http://www.w3.org/ns/prov#Association> ;
  rdfs:range nmdc:CreditEnum .

nmdc:MetabolomicsAnalysisActivity a rdfs:Class ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:PeptideQuantification a rdfs:Class ;
  rdfs:comment "This is used to link a metaproteomics analysis workflow to a specific peptide sequence and related information" .

nmdc:OmicsProcessing a rdfs:Class ;
  rdfs:comment "The methods and processes used to generate omics data from a biosample or organism." ;
  rdfs:subClassOf nmdc:BiosampleProcessing .

nmdc:processing_institution a rdf:Property ;
  rdfs:comment "The organization that processed the sample." ;
  rdfs:range nmdc:ProcessingInstitutionEnum .

<https://w3id.org/mixs/0000052> a rdf:Property ;
  rdfs:label "chimera check software" ;
  rdfs:comment "Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

<https://w3id.org/mixs/0000044> a rdf:Property ;
  rdfs:label "target gene" ;
  rdfs:comment "Targeted gene or locus name for marker gene studies" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

nmdc:omics_type a rdf:Property ;
  rdfs:comment "The type of omics data" ;
  rdfs:range nmdc:ControlledTermValue .

nmdc:gold_sequencing_project_identifiers a rdf:Property ;
  rdfs:comment "identifiers for corresponding sequencing project in GOLD" ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:omics_processing_identifiers .

<https://w3id.org/mixs/0000050> a rdf:Property ;
  rdfs:label "sequencing method" ;
  rdfs:comment "Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)." ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

<https://w3id.org/mixs/0000037> a rdf:Property ;
  rdfs:label "nucleic acid extraction" ;
  rdfs:comment "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

<https://w3id.org/mixs/0000046> a rdf:Property ;
  rdfs:label "pcr primers" ;
  rdfs:comment "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

<https://w3id.org/mixs/0000045> a rdf:Property ;
  rdfs:label "target subfragment" ;
  rdfs:comment "Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

<https://w3id.org/mixs/0000038> a rdf:Property ;
  rdfs:label "nucleic acid amplification" ;
  rdfs:comment "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

<https://w3id.org/mixs/0000051> a rdf:Property ;
  rdfs:label "sequence quality check" ;
  rdfs:comment "Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

nmdc:ncbi_project_name a rdf:Property ;
  rdfs:range xsd:string .

nmdc:insdc_experiment_identifiers a rdf:Property ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:external_database_identifiers .

nmdc:instrument_name a rdf:Property ;
  rdfs:comment "The name of the instrument that was used for processing the sample." ;
  rdfs:range xsd:string .

<https://w3id.org/mixs/0000049> a rdf:Property ;
  rdfs:label "pcr conditions" ;
  rdfs:comment "Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'" ;
  rdfs:range nmdc:TextValue ;
  rdfs:subPropertyOf nmdc:sequencing_field .

nmdc:MetatranscriptomeActivity a rdfs:Class ;
  rdfs:comment "A metatranscriptome activity that e.g. pools assembly and annotation activity." ;
  rdfs:subClassOf nmdc:WorkflowExecutionActivity .

nmdc:ControlledTermValue a rdfs:Class ;
  rdfs:comment "A controlled term or class from an ontology" ;
  rdfs:subClassOf nmdc:AttributeValue .

nmdc:LabDevice a rdfs:Class ;
  rdfs:label "Lab device" .

nmdc:device_type a rdf:Property ;
  rdfs:label "device type" ;
  rdfs:range nmdc:DeviceTypeEnum .

nmdc:activity_speed a rdf:Property ;
  rdfs:label "activity speed" ;
  rdfs:range nmdc:QuantityValue .

nmdc:activity_temperature a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:activity_time a rdf:Property ;
  rdfs:label "activity time" ;
  rdfs:range nmdc:QuantityValue .

<https://w3id.org/mixs/0000015> a rdf:Property ;
  rdfs:label "relationship to oxygen" ;
  rdfs:comment "Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments" ;
  rdfs:range nmdc:RelToOxygenEnum ;
  rdfs:subPropertyOf nmdc:nucleic_acid_sequence_source_field .

<https://w3id.org/mixs/0000122> a rdf:Property ;
  rdfs:label "absolute air humidity" ;
  rdfs:comment "Actual mass of water vapor - mh20 - present in the air water vapor mixture" ;
  rdfs:range nmdc:QuantityValue ;
  rdfs:subPropertyOf nmdc:core_field .

nmdc:all_proteins a rdf:Property ;
  rdfs:range xsd:string .

nmdc:alternate_emails a rdf:Property ;
  rdfs:comment "One or more other email addresses for an entity." ;
  rdfs:range xsd:string .

nmdc:analysis_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:external_database_identifiers .

nmdc:antibiotic_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:aromatics_pc a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:asphaltenes_pc a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:assembly_identifiers a rdf:Property ;
  rdfs:range xsd:string .

nmdc:atmospheric_data a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:attribute a rdf:Property ;
  rdfs:comment "A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template" ;
  rdfs:range xsd:string .

nmdc:avg_occup a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:bathroom_count a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:bedroom_count a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:best_protein a rdf:Property ;
  rdfs:range xsd:string .

nmdc:biocide_admin_method a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:biogas_retention_time a rdf:Property ;
  rdfs:range xsd:string .

nmdc:biogas_temperature a rdf:Property ;
  rdfs:range xsd:string .

nmdc:biomass a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:biosample_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:external_database_identifiers .

nmdc:canary a rdf:Property ;
  rdfs:comment "a slot that can be added and removed as evidence that schema changes have propagated to other systems" ;
  rdfs:range xsd:string .

nmdc:chem_mutagen a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:chem_treat_method a rdf:Property ;
  rdfs:range xsd:string .

nmdc:chemical a rdf:Property ;
  rdfs:comment "from reaction participant class" ;
  rdfs:range xsd:string .

nmdc:chemical_formula a rdf:Property ;
  rdfs:range xsd:string .

nmdc:completion_date a rdf:Property ;
  rdfs:range xsd:string .

nmdc:cool_syst_id a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:core_field a rdf:Property ;
  rdfs:comment "basic fields" ;
  rdfs:range xsd:string .

nmdc:date_last_rain a rdf:Property ;
  rdfs:range nmdc:TimestampValue .

nmdc:diether_lipids a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:direction a rdf:Property ;
  rdfs:range xsd:string .

nmdc:ecosystem_path_id a rdf:Property ;
  rdfs:comment "A unique id representing the GOLD classifers associated with a sample." ;
  rdfs:range xsd:string .

nmdc:elevator a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:emsl a rdf:Property ;
  rdfs:comment "Group of terms that appear in the 'EMSL' section of the NMDC sample metadata submission portal" ;
  rdfs:range xsd:string .

nmdc:emsl_store_temp a rdf:Property ;
  rdfs:label "EMSL sample storage temperature, deg. C" ;
  rdfs:comment "The temperature at which the sample should be stored upon delivery to EMSL" ;
  rdfs:range xsd:string .

nmdc:emulsions a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:encodes a rdf:Property ;
  rdfs:range xsd:string .

nmdc:end a rdf:Property ;
  rdfs:range xsd:string .

nmdc:environment_field a rdf:Property ;
  rdfs:comment "field describing environmental aspect of a sample" ;
  rdfs:range xsd:string .

nmdc:escalator a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:exp_pipe a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:ext_door a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:external_database_identifiers a rdf:Property ;
  rdfs:comment "Link to corresponding identifier in external database" ;
  rdfs:range xsd:anyURI ;
  rdfs:subPropertyOf nmdc:alternative_identifiers .

nmdc:feature_type a rdf:Property ;
  rdfs:range xsd:string .

nmdc:fertilizer_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:floor_count a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:freq_clean a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:freq_cook a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:fungicide_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:gaseous_substances a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:gff_coordinate a rdf:Property ;
  rdfs:comment "A positive 1-based integer coordinate indicating start or end" ;
  rdfs:range xsd:integer .

nmdc:gold_identifiers a rdf:Property ;
  rdfs:seeAlso <https://gold.jgi.doe.gov/> ;
  rdfs:range xsd:string .

nmdc:gold_path_field a rdf:Property ;
  rdfs:comment "This is a grouping for any of the gold path fields" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:attribute .

nmdc:gravity a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:growth_hormone_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:hall_count a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:has_calibration a rdf:Property ;
  rdfs:range xsd:string .

nmdc:has_metabolite_quantifications a rdf:Property ;
  rdfs:range xsd:string .

nmdc:has_part a rdf:Property ;
  rdfs:range xsd:string .

nmdc:has_participants a rdf:Property ;
  rdfs:range xsd:string .

nmdc:has_peptide_quantifications a rdf:Property ;
  rdfs:range xsd:string .

nmdc:hcr_pressure a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:hcr_temp a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:heat_sys_deliv_meth a rdf:Property ;
  rdfs:range xsd:string .

nmdc:heat_system_id a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:herbicide_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:highest_similarity_score a rdf:Property ;
  rdfs:range xsd:string .

nmdc:host_body_product a rdf:Property ;
  rdfs:range nmdc:ControlledTermValue .

nmdc:host_body_site a rdf:Property ;
  rdfs:range nmdc:ControlledTermValue .

nmdc:host_family_relation a rdf:Property ;
  rdfs:range xsd:string .

nmdc:host_phenotype a rdf:Property ;
  rdfs:range nmdc:ControlledTermValue .

nmdc:host_subspecf_genlin a rdf:Property ;
  rdfs:range xsd:string .

nmdc:host_symbiont a rdf:Property ;
  rdfs:range xsd:string .

nmdc:inchi a rdf:Property ;
  rdfs:range xsd:string .

nmdc:inchi_key a rdf:Property ;
  rdfs:range xsd:string .

nmdc:inorg_particles a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:insdc_analysis_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:analysis_identifiers .

nmdc:insdc_identifiers a rdf:Property ;
  rdfs:comment "Any identifier covered by the International Nucleotide Sequence Database Collaboration" ;
  rdfs:seeAlso <https://www.insdc.org/> , <https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html> ;
  rdfs:range xsd:string .

nmdc:insdc_secondary_sample_identifiers a rdf:Property ;
  rdfs:comment "secondary identifiers for corresponding sample in INSDC" ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:biosample_identifiers .

nmdc:insdc_sra_ena_study_identifiers a rdf:Property ;
  rdfs:comment "identifiers for corresponding project in INSDC SRA / ENA" ;
  rdfs:seeAlso <https://github.com/bioregistry/bioregistry/issues/109> , <https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies> ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:study_identifiers .

nmdc:investigation_field a rdf:Property ;
  rdfs:comment "field describing aspect of the investigation/study to which the sample belongs" ;
  rdfs:range xsd:string .

nmdc:is_balanced a rdf:Property ;
  rdfs:range xsd:string .

nmdc:is_diastereoselective a rdf:Property ;
  rdfs:range xsd:string .

nmdc:is_fully_characterized a rdf:Property ;
  rdfs:range xsd:string .

nmdc:is_stereo a rdf:Property ;
  rdfs:range xsd:string .

nmdc:is_transport a rdf:Property ;
  rdfs:range xsd:string .

nmdc:iw_bt_date_well a rdf:Property ;
  rdfs:range nmdc:TimestampValue .

nmdc:jgi_metagenomics a rdf:Property ;
  rdfs:comment "Group of terms that appear in the 'JGI-Metagenomics' section of the NMDC sample metadata submission portal" ;
  rdfs:range xsd:string .

nmdc:jgi_metatranscriptomics a rdf:Property ;
  rdfs:comment "Group of terms that appear in the 'JGI-Metatranscriptomics' section of the NMDC sample metadata submission portal" ;
  rdfs:range xsd:string .

nmdc:keywords a rdf:Property ;
  rdfs:comment "A list of keywords that used to associate the entity. Keywords SHOULD come from controlled vocabularies, including MESH, ENVO." ;
  rdfs:range xsd:string .

nmdc:last_clean a rdf:Property ;
  rdfs:range nmdc:TimestampValue .

nmdc:left_participants a rdf:Property ;
  rdfs:range xsd:string .

nmdc:m_ix_s_inspired a rdf:Property ;
  rdfs:comment "Group of terms that appear in the 'MIxS Inspired' section of the NMDC sample metadata submission portal" ;
  rdfs:range xsd:string .

nmdc:massive_identifiers a rdf:Property ;
  rdfs:comment "identifiers for entities according to MASSIVE" ;
  rdfs:range xsd:string .

nmdc:max_occup a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:metabolite_quantified a rdf:Property ;
  rdfs:range xsd:string .

nmdc:metagenome_assembly_parameter a rdf:Property ;
  rdfs:range xsd:string .

nmdc:mgnify_analysis_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:mgnify_identifiers , nmdc:analysis_identifiers .

nmdc:mgnify_identifiers a rdf:Property ;
  rdfs:seeAlso <https://www.ebi.ac.uk/metagenomics/> ;
  rdfs:range xsd:string .

nmdc:micro_biomass_meth a rdf:Property ;
  rdfs:range xsd:string .

nmdc:min_q_value a rdf:Property ;
  rdfs:range xsd:string .

nmdc:mineral_nutr_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:non_min_nutr_regm a rdf:Property ;
  rdfs:range xsd:string .

nmdc:nucleic_acid_sequence_source_field a rdf:Property ;
  rdfs:range xsd:string .

nmdc:number_pets a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:number_plants a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:number_resident a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:object_set a rdf:Property ;
  rdfs:comment "Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types" ;
  rdfs:domain nmdc:Database ;
  rdfs:range xsd:string .

nmdc:occup_density_samp a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:occup_samp a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:omics_processing_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:external_database_identifiers .

nmdc:org_count_qpcr_info a rdf:Property ;
  rdfs:range xsd:string .

nmdc:org_particles a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:particle_class a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:peptide_sequence a rdf:Property ;
  rdfs:range xsd:string .

nmdc:peptide_sequence_count a rdf:Property ;
  rdfs:range xsd:string .

nmdc:peptide_spectral_count a rdf:Property ;
  rdfs:range xsd:string .

nmdc:peptide_sum_masic_abundance a rdf:Property ;
  rdfs:range xsd:string .

nmdc:permeability a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:pesticide_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:phase a rdf:Property ;
  rdfs:range xsd:string .

nmdc:plant_growth_med a rdf:Property ;
  rdfs:range nmdc:ControlledTermValue .

nmdc:plant_struc a rdf:Property ;
  rdfs:range nmdc:ControlledTermValue .

nmdc:pollutants a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:porosity a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:pres_animal_insect a rdf:Property ;
  rdfs:range xsd:string .

nmdc:prev_land_use_meth a rdf:Property ;
  rdfs:range xsd:string .

nmdc:prod_start_date a rdf:Property ;
  rdfs:range nmdc:TimestampValue .

nmdc:protein_spectral_count a rdf:Property ;
  rdfs:range xsd:string .

nmdc:protein_sum_masic_abundance a rdf:Property ;
  rdfs:range xsd:string .

nmdc:radiation_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:rainfall_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:read_qc_analysis_statistic a rdf:Property ;
  rdfs:range xsd:string .

nmdc:resins_pc a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:right_participants a rdf:Property ;
  rdfs:range xsd:string .

nmdc:room_architec_elem a rdf:Property ;
  rdfs:range xsd:string .

nmdc:room_count a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:room_dim a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:room_door_dist a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:room_net_area a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:room_occup a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:room_vol a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:root_med_carbon a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:root_med_macronutr a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:root_med_micronutr a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:root_med_ph a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:root_med_regl a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:root_med_suppl a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:salt_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:samp_collec_device a rdf:Property ;
  rdfs:range xsd:string .

nmdc:samp_loc_corr_rate a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:samp_md a rdf:Property ;
  rdfs:range nmdc:QuantityValue .

nmdc:samp_preserv a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:samp_room_id a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:samp_time_out a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:samp_transport_cond a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:samp_tvdss a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:sample_collection_day a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:sample_collection_hour a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:sample_collection_minute a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:sample_collection_month a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:sample_collection_year a rdf:Property ;
  rdfs:range xsd:integer .

nmdc:sample_id a rdf:Property ;
  rdfs:comment "Group of terms that appear in the 'Sample ID' section of the NMDC sample metadata submission portal" ;
  rdfs:range xsd:string .

nmdc:saturates_pc a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:seqid a rdf:Property ;
  rdfs:range xsd:string .

nmdc:sequencing_field a rdf:Property ;
  rdfs:range xsd:string .

nmdc:shad_dev_water_mold a rdf:Property ;
  rdfs:range xsd:string .

nmdc:size_frac a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:smarts_string a rdf:Property ;
  rdfs:range xsd:string .

nmdc:smiles a rdf:Property ;
  rdfs:range xsd:string .

nmdc:soil_annual_season_temp a rdf:Property ;
  rdfs:range xsd:string .

nmdc:soil_texture_meth a rdf:Property ;
  rdfs:range xsd:string .

nmdc:soluble_inorg_mat a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:soluble_org_mat a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:start a rdf:Property ;
  rdfs:range xsd:string .

nmdc:stoichiometry a rdf:Property ;
  rdfs:comment "from reaction participant class" ;
  rdfs:range xsd:string .

nmdc:strand a rdf:Property ;
  rdfs:range xsd:string .

nmdc:study_identifiers a rdf:Property ;
  rdfs:range xsd:string ;
  rdfs:subPropertyOf nmdc:external_database_identifiers .

nmdc:suspend_solids a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:viscosity a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:volatile_org_comp a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:water_temp_regm a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:window_open_freq a rdf:Property ;
  rdfs:range nmdc:TextValue .

nmdc:window_size a rdf:Property ;
  rdfs:range nmdc:TextValue .

<http://www.w3.org/ns/shex#iri> a rdfs:Datatype ;
  rdfs:comment "A URI or CURIE that represents an object in the model." .

<http://www.w3.org/ns/shex#nonLiteral> a rdfs:Datatype ;
  rdfs:comment "A URI, CURIE or BNODE that represents a node in a model." .

<https://w3id.org/linkml/DateOrDatetime> a rdfs:Datatype ;
  rdfs:comment "Either a date or a datetime" .

nmdc:DnaSampleFormatEnum a rdfs:Class .

nmdc:DnaSampleFormatEnum.10_M_M_TRIS_H_CL a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.DNA_STABLE a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.ETHANOL a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.GENTEGRA_DNA a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.GENTEGRA_RNA a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.LOW_EDTA_TE a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.MDA_REACTION_BUFFER a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.PBS a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.PELLET a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.RNA_STABLE a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.TE a nmdc:DnaSampleFormatEnum .

nmdc:DnaSampleFormatEnum.WATER a nmdc:DnaSampleFormatEnum .

nmdc:FileTypeEnum a rdfs:Class .

nmdc:FileTypeEnum.ANNOTATION_AMINO_ACID_FASTA a nmdc:FileTypeEnum ;
  rdfs:comment "FASTA amino acid file for annotated proteins" .

nmdc:FileTypeEnum.ANNOTATION_ENZYME_COMMISSION a nmdc:FileTypeEnum ;
  rdfs:comment "Tab delimited file for EC annotation" .

nmdc:FileTypeEnum.ANNOTATION_INFO_FILE a nmdc:FileTypeEnum ;
  rdfs:comment "File containing annotation info" .

nmdc:FileTypeEnum.ANNOTATION_KEGG_ORTHOLOGY a nmdc:FileTypeEnum ;
  rdfs:comment "Tab delimited file for KO annotation" .

nmdc:FileTypeEnum.ANNOTATION_STATISTICS a nmdc:FileTypeEnum ;
  rdfs:comment "Annotation statistics report" .

nmdc:FileTypeEnum.ASSEMBLY_AGP a nmdc:FileTypeEnum ;
  rdfs:comment "An AGP format file that describes the assembly" .

nmdc:FileTypeEnum.ASSEMBLY_CONTIGS a nmdc:FileTypeEnum ;
  rdfs:comment "Final assembly contigs fasta" .

nmdc:FileTypeEnum.ASSEMBLY_COVERAGE_BAM a nmdc:FileTypeEnum ;
  rdfs:comment "Sorted bam file of reads mapping back to the final assembly" .

nmdc:FileTypeEnum.ASSEMBLY_COVERAGE_STATS a nmdc:FileTypeEnum ;
  rdfs:comment "Assembled contigs coverage information" .

nmdc:FileTypeEnum.ASSEMBLY_INFO_FILE a nmdc:FileTypeEnum ;
  rdfs:comment "File containing assembly info" .

nmdc:FileTypeEnum.ASSEMBLY_SCAFFOLDS a nmdc:FileTypeEnum ;
  rdfs:comment "Final assembly scaffolds fasta" .

nmdc:FileTypeEnum.CATH_FUN_FAMS_FUNCTIONAL_FAMILIES_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with CATH FunFams" .

nmdc:FileTypeEnum.CRT_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with CRT" .

nmdc:FileTypeEnum.CENTRIFUGE_CLASSIFICATION_REPORT a nmdc:FileTypeEnum ;
  rdfs:comment "Centrifuge output report file" .

nmdc:FileTypeEnum.CENTRIFUGE_KRONA_PLOT a nmdc:FileTypeEnum ;
  rdfs:comment "Centrifuge krona plot HTML file" .

nmdc:FileTypeEnum.CENTRIFUGE_TAXONOMIC_CLASSIFICATION a nmdc:FileTypeEnum ;
  rdfs:comment "Centrifuge output read classification file" .

nmdc:FileTypeEnum.CENTRIFUGE_OUTPUT_REPORT_FILE a nmdc:FileTypeEnum ;
  rdfs:comment "Centrifuge output report file" .

nmdc:FileTypeEnum.CHECK_M_STATISTICS a nmdc:FileTypeEnum ;
  rdfs:comment "CheckM statistics report" .

nmdc:FileTypeEnum.CLUSTERS_OF_ORTHOLOGOUS_GROUPS_COG_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with COGs" .

nmdc:FileTypeEnum.CONTIG_MAPPING_FILE a nmdc:FileTypeEnum ;
  rdfs:comment "Contig mappings between contigs and scaffolds" .

nmdc:FileTypeEnum.CRISPR_TERMS a nmdc:FileTypeEnum ;
  rdfs:comment "Crispr Terms" .

nmdc:FileTypeEnum.DIRECT_INFUSION_FT_ICR_MS_RAW_DATA a nmdc:FileTypeEnum ;
  rdfs:comment "Direct infusion 21 Tesla Fourier Transform ion cyclotron resonance mass spectrometry raw data acquired in broadband full scan mode" .

nmdc:FileTypeEnum.ERROR_CORRECTED_READS a nmdc:FileTypeEnum ;
  rdfs:comment "Error corrected reads fastq" .

nmdc:FileTypeEnum.FT_ICR_MS_ANALYSIS_RESULTS a nmdc:FileTypeEnum ;
  rdfs:comment "FT ICR-MS-based molecular formula assignment results table" .

nmdc:FileTypeEnum.FILTERED_SEQUENCING_READS a nmdc:FileTypeEnum ;
  rdfs:comment "Reads QC result fastq (clean data)" .

nmdc:FileTypeEnum.FUNCTIONAL_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with functional annotations" .

nmdc:FileTypeEnum.GC_MS_METABOLOMICS_RESULTS a nmdc:FileTypeEnum ;
  rdfs:comment "GC-MS-based metabolite assignment results table" .

nmdc:FileTypeEnum.GOTTCHA_2_CLASSIFICATION_REPORT a nmdc:FileTypeEnum ;
  rdfs:comment "GOTTCHA2 classification report file" .

nmdc:FileTypeEnum.GOTTCHA_2_KRONA_PLOT a nmdc:FileTypeEnum ;
  rdfs:comment "GOTTCHA2 krona plot HTML file" .

nmdc:FileTypeEnum.GOTTCHA_2_REPORT_FULL a nmdc:FileTypeEnum ;
  rdfs:comment "GOTTCHA2 report file" .

nmdc:FileTypeEnum.GTDBTK_ARCHAEAL_SUMMARY a nmdc:FileTypeEnum ;
  rdfs:comment "GTDBTK archaeal summary" .

nmdc:FileTypeEnum.GTDBTK_BACTERIAL_SUMMARY a nmdc:FileTypeEnum ;
  rdfs:comment "GTDBTK bacterial summary" .

nmdc:FileTypeEnum.GENE_PHYLOGENY_TSV a nmdc:FileTypeEnum ;
  rdfs:comment "Gene Phylogeny tsv" .

nmdc:FileTypeEnum.GENEMARK_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with Genemark" .

nmdc:FileTypeEnum.KO_EC_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with KO_EC" .

nmdc:FileTypeEnum.KRAKEN_2_CLASSIFICATION_REPORT a nmdc:FileTypeEnum ;
  rdfs:comment "Kraken2 output report file" .

nmdc:FileTypeEnum.KRAKEN_2_KRONA_PLOT a nmdc:FileTypeEnum ;
  rdfs:comment "Kraken2 krona plot HTML file" .

nmdc:FileTypeEnum.KRAKEN_2_TAXONOMIC_CLASSIFICATION a nmdc:FileTypeEnum ;
  rdfs:comment "Kraken2 output read classification file" .

nmdc:FileTypeEnum.METAGENOME_BINS a nmdc:FileTypeEnum ;
  rdfs:comment "Metagenome bin contigs fasta" .

nmdc:FileTypeEnum.METAGENOME_RAW_READS a nmdc:FileTypeEnum .

nmdc:FileTypeEnum.METAPROTEOMICS_WORKFLOW_STATISTICS a nmdc:FileTypeEnum ;
  rdfs:comment "Aggregate workflow statistics file" .

nmdc:FileTypeEnum.MISC_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with Misc" .

nmdc:FileTypeEnum.PEPTIDE_REPORT a nmdc:FileTypeEnum ;
  rdfs:comment "Filtered peptide report file" .

nmdc:FileTypeEnum.PFAM_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with Pfam" .

nmdc:FileTypeEnum.PRODIGAL_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with Prodigal" .

nmdc:FileTypeEnum.PRODUCT_NAMES a nmdc:FileTypeEnum ;
  rdfs:comment "Product names file" .

nmdc:FileTypeEnum.PROTEIN_REPORT a nmdc:FileTypeEnum ;
  rdfs:comment "Filtered protein report file" .

nmdc:FileTypeEnum.QC_STATISTICS a nmdc:FileTypeEnum ;
  rdfs:comment "Reads QC summary statistics" .

nmdc:FileTypeEnum.QC_NON_R_RNA_R_1 a nmdc:FileTypeEnum ;
  rdfs:comment "QC removed rRNA reads (R1) fastq" .

nmdc:FileTypeEnum.QC_NON_R_RNA_R_2 a nmdc:FileTypeEnum ;
  rdfs:comment "QC removed rRNA reads (R2) fastq" .

nmdc:FileTypeEnum.RFAM_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with RFAM" .

nmdc:FileTypeEnum.RAW_COMPRESSED_METAGENOME_INTERLEAVED_PAIRED_END_READS a nmdc:FileTypeEnum ;
  rdfs:comment "Raw sequencing reads from a metagenome that is in interleaved paired-end format and compressed using GNU zip format." .

nmdc:FileTypeEnum.READ_COUNT_AND_RPKM a nmdc:FileTypeEnum ;
  rdfs:comment "Annotation read count and RPKM per feature JSON" .

nmdc:FileTypeEnum.SMART_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with SMART" .

nmdc:FileTypeEnum.SUPER_FAM_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with SUPERFam" .

nmdc:FileTypeEnum.STRUCTURAL_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with structural annotations" .

nmdc:FileTypeEnum.STRUCTURAL_ANNOTATION_STATS_JSON a nmdc:FileTypeEnum ;
  rdfs:comment "Structural annotations stats json" .

nmdc:FileTypeEnum.TIGR_FAM_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with TIGRfam" .

nmdc:FileTypeEnum.TMRNA_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with TMRNA" .

nmdc:FileTypeEnum.TRNA_ANNOTATION_GFF a nmdc:FileTypeEnum ;
  rdfs:comment "GFF3 format file with TRNA" .

nmdc:FileTypeEnum.UNFILTERED_METAPROTEOMICS_RESULTS a nmdc:FileTypeEnum ;
  rdfs:comment "MSGFjobs and MASIC output file" .

nmdc:TillageEnum a rdfs:Class .

nmdc:TillageEnum.CHISEL a nmdc:TillageEnum .

nmdc:TillageEnum.CUTTING_DISC a nmdc:TillageEnum .

nmdc:TillageEnum.DISC_PLOUGH a nmdc:TillageEnum .

nmdc:TillageEnum.DRILL a nmdc:TillageEnum .

nmdc:TillageEnum.MOULDBOARD a nmdc:TillageEnum .

nmdc:TillageEnum.RIDGE_TILL a nmdc:TillageEnum .

nmdc:TillageEnum.STRIP_TILLAGE a nmdc:TillageEnum .

nmdc:TillageEnum.TINED a nmdc:TillageEnum .

nmdc:TillageEnum.ZONAL_TILLAGE a nmdc:TillageEnum .

nmdc:OxyStatSampEnum a rdfs:Class .

nmdc:OxyStatSampEnum.AEROBIC a nmdc:OxyStatSampEnum .

nmdc:OxyStatSampEnum.ANAEROBIC a nmdc:OxyStatSampEnum .

nmdc:OxyStatSampEnum.OTHER a nmdc:OxyStatSampEnum .

nmdc:BiosampleCategoryEnum a rdfs:Class ;
  rdfs:comment "Funding-based, sample location-based, or experimental method-based defined categories" .

<https://jgi.doe.gov/user-programs/program-info/ficus-overview> a nmdc:BiosampleCategoryEnum ;
  rdfs:label "Facilities Integrating Collaborations for User Science" .

<https://lternet.edu/> a nmdc:BiosampleCategoryEnum ;
  rdfs:label "National Science Foundation's Long Term Ecological Research Network" .

<https://www.neonscience.org> a nmdc:BiosampleCategoryEnum ;
  rdfs:label "National Science Foundation's National Ecological Observatory Network" .

<https://science.osti.gov/ber/funding-opportunities/laboratory-scientific-focus-area-guidance> a nmdc:BiosampleCategoryEnum ;
  rdfs:label "Department of Energy Office of Science Biological and Environmental Research Program Laboratory Science Focus Areas" ;
  rdfs:comment "Science Focus Area projects funded through the Department of Energy Office of Science Biological and Environmental Research Program" .

nmdc:BiosampleCategoryEnum.SIP a nmdc:BiosampleCategoryEnum .

nmdc:RnaSampleFormatEnum a rdfs:Class .

nmdc:RnaSampleFormatEnum.10_M_M_TRIS_H_CL a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.DNA_STABLE a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.ETHANOL a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.GENTEGRA_DNA a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.GENTEGRA_RNA a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.LOW_EDTA_TE a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.MDA_REACTION_BUFFER a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.PBS a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.PELLET a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.RNA_STABLE a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.TE a nmdc:RnaSampleFormatEnum .

nmdc:RnaSampleFormatEnum.WATER a nmdc:RnaSampleFormatEnum .

nmdc:SamplingMethodEnum a rdfs:Class .

nmdc:SamplingMethodEnum.WEIGHING a nmdc:SamplingMethodEnum ;
  rdfs:label "Weighing" .

nmdc:DnaDnaseEnum a rdfs:Class .

nmdc:DnaDnaseEnum.NO a nmdc:DnaDnaseEnum .

nmdc:DnaDnaseEnum.YES a nmdc:DnaDnaseEnum .

nmdc:SolventEnum a rdfs:Class ;
  rdfs:label "Solvent enumeration" .

<http://purl.obolibrary.org/obo/CHEBI_/35255> a nmdc:SolventEnum ;
  rdfs:label "Chloroform" .

nmdc:SolventEnum.DEIONIZED_WATER a nmdc:SolventEnum ;
  rdfs:label "Deionized water" .

<http://purl.obolibrary.org/obo/CHEBI_/17790> a nmdc:SolventEnum ;
  rdfs:label "Methanol" .

nmdc:ProfilePositionEnum a rdfs:Class .

nmdc:ProfilePositionEnum.BACKSLOPE a nmdc:ProfilePositionEnum .

nmdc:ProfilePositionEnum.FOOTSLOPE a nmdc:ProfilePositionEnum .

nmdc:ProfilePositionEnum.SHOULDER a nmdc:ProfilePositionEnum .

nmdc:ProfilePositionEnum.SUMMIT a nmdc:ProfilePositionEnum .

nmdc:ProfilePositionEnum.TOESLOPE a nmdc:ProfilePositionEnum .

nmdc:AnalysisTypeEnum a rdfs:Class .

nmdc:AnalysisTypeEnum.METABOLOMICS a nmdc:AnalysisTypeEnum .

nmdc:AnalysisTypeEnum.METAGENOMICS a nmdc:AnalysisTypeEnum .

nmdc:AnalysisTypeEnum.METAPROTEOMICS a nmdc:AnalysisTypeEnum .

nmdc:AnalysisTypeEnum.METATRANSCRIPTOMICS a nmdc:AnalysisTypeEnum .

nmdc:AnalysisTypeEnum.NATURAL_ORGANIC_MATTER a nmdc:AnalysisTypeEnum .

nmdc:ContainerTypeEnum a rdfs:Class ;
  rdfs:label "Container type enumeration" .

nmdc:ContainerTypeEnum.SCREW_TOP_CONICAL a nmdc:ContainerTypeEnum ;
  rdfs:label "Screw top conical tube" .

nmdc:SampleTypeEnum a rdfs:Class .

nmdc:SampleTypeEnum.SOIL a nmdc:SampleTypeEnum .

nmdc:SampleTypeEnum.WATER_EXTRACT_SOIL a nmdc:SampleTypeEnum .

nmdc:CreditEnum a rdfs:Class .

nmdc:CreditEnum.CONCEPTUALIZATION a nmdc:CreditEnum ;
  rdfs:comment "Conceptualization" .

nmdc:CreditEnum.DATA_CURATION a nmdc:CreditEnum ;
  rdfs:comment "Data curation" .

nmdc:CreditEnum.FORMAL_ANALYSIS a nmdc:CreditEnum ;
  rdfs:comment "Formal Analysis" .

nmdc:CreditEnum.FUNDING_ACQUISITION a nmdc:CreditEnum ;
  rdfs:comment "Funding acquisition" .

nmdc:CreditEnum.INVESTIGATION a nmdc:CreditEnum ;
  rdfs:comment "Investigation" .

nmdc:CreditEnum.METHODOLOGY a nmdc:CreditEnum ;
  rdfs:comment "Methodology" .

<http://purl.obolibrary.org/obo/OBI_/0000103> a nmdc:CreditEnum ;
  rdfs:comment "principal investigator role" .

nmdc:CreditEnum.PROJECT_ADMINISTRATION a nmdc:CreditEnum ;
  rdfs:comment "Project administration" .

nmdc:CreditEnum.RESOURCES a nmdc:CreditEnum ;
  rdfs:comment "Resources" .

nmdc:CreditEnum.SOFTWARE a nmdc:CreditEnum ;
  rdfs:comment "Software" .

<http://identifiers.org/efo/0001741> a nmdc:CreditEnum ;
  rdfs:comment "the person(s) who enter study and biosample metadata into the NMDC submission portal" .

nmdc:CreditEnum.SUPERVISION a nmdc:CreditEnum ;
  rdfs:comment "Supervision" .

nmdc:CreditEnum.VALIDATION a nmdc:CreditEnum ;
  rdfs:comment "Validation" .

nmdc:CreditEnum.VISUALIZATION a nmdc:CreditEnum ;
  rdfs:comment "Visualization" .

nmdc:CreditEnum.WRITING_ORIGINAL_DRAFT a nmdc:CreditEnum ;
  rdfs:comment "Writing – original draft" .

nmdc:CreditEnum.WRITING_REVIEW_AND_EDITING a nmdc:CreditEnum ;
  rdfs:comment "Writing – review & editing" .

nmdc:DeviceTypeEnum a rdfs:Class ;
  rdfs:label "Shaker type enumeration" .

nmdc:DeviceTypeEnum.ORBITAL_SHAKER a nmdc:DeviceTypeEnum ;
  rdfs:label "Orbital shaker" .

nmdc:DeviceTypeEnum.THERMOMIXER a nmdc:DeviceTypeEnum ;
  rdfs:label "Thermomixer" .

nmdc:RnaContTypeEnum a rdfs:Class .

nmdc:RnaContTypeEnum.PLATE a nmdc:RnaContTypeEnum .

nmdc:RnaContTypeEnum.TUBE a nmdc:RnaContTypeEnum .

nmdc:DnaseRnaEnum a rdfs:Class .

nmdc:DnaseRnaEnum.NO a nmdc:DnaseRnaEnum .

nmdc:DnaseRnaEnum.YES a nmdc:DnaseRnaEnum .

nmdc:OrganismCountEnum a rdfs:Class .

nmdc:OrganismCountEnum.ATP a nmdc:OrganismCountEnum .

nmdc:OrganismCountEnum.MPN a nmdc:OrganismCountEnum .

nmdc:OrganismCountEnum.OTHER a nmdc:OrganismCountEnum .

nmdc:DrainageClassEnum a rdfs:Class .

nmdc:DrainageClassEnum.EXCESSIVELY_DRAINED a nmdc:DrainageClassEnum .

nmdc:DrainageClassEnum.MODERATELY_WELL a nmdc:DrainageClassEnum .

nmdc:DrainageClassEnum.POORLY a nmdc:DrainageClassEnum .

nmdc:DrainageClassEnum.SOMEWHAT_POORLY a nmdc:DrainageClassEnum .

nmdc:DrainageClassEnum.VERY_POORLY a nmdc:DrainageClassEnum .

nmdc:DrainageClassEnum.WELL a nmdc:DrainageClassEnum .

nmdc:TidalStageEnum a rdfs:Class .

nmdc:TidalStageEnum.EBB_TIDE a nmdc:TidalStageEnum .

nmdc:TidalStageEnum.FLOOD_TIDE a nmdc:TidalStageEnum .

nmdc:TidalStageEnum.HIGH_TIDE a nmdc:TidalStageEnum .

nmdc:TidalStageEnum.LOW_TIDE a nmdc:TidalStageEnum .

nmdc:CurLandUseEnum a rdfs:Class .

nmdc:CurLandUseEnum.BADLANDS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.CITIES a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.CONIFERS_E_G_PINE_SPRUCE_FIR_CYPRESS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.CROP_TREES_NUTS_FRUIT_CHRISTMAS_TREES_NURSERY_TREES a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.FARMSTEAD a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.GRAVEL a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.HARDWOODS_E_G_OAK_HICKORY_ELM_ASPEN a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.HAYLAND a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.HORTICULTURAL_PLANTS_E_G_TULIPS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.INDUSTRIAL_AREAS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.INTERMIXED_HARDWOOD_AND_CONIFERS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.MARSHLANDS_GRASS_SEDGES_RUSHES a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.MEADOWS_GRASSES_ALFALFA_FESCUE_BROMEGRASS_TIMOTHY a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.MINES_QUARRIES a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.MUDFLATS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.OIL_WASTE_AREAS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.PASTURELAND_GRASSLANDS_USED_FOR_LIVESTOCK_GRAZING a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.PERMANENT_SNOW_OR_ICE a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.RAINFOREST_EVERGREEN_FOREST_RECEIVING_GREATER_THAN_406_CM_ANNUAL_RAINFALL a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.RANGELAND a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.ROADS_RAILROADS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.ROCK a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.ROW_CROPS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SALINE_SEEPS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SALT_FLATS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SAND a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SHRUB_CROPS_BLUEBERRIES_NURSERY_ORNAMENTALS_FILBERTS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SHRUB_LAND_E_G_MESQUITE_SAGE_BRUSH_CREOSOTE_BUSH_SHRUB_OAK_EUCALYPTUS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SMALL_GRAINS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SUCCESSIONAL_SHRUB_LAND_TREE_SAPLINGS_HAZELS_SUMACS_CHOKECHERRY_SHRUB_DOGWOODS_BLACKBERRIES a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.SWAMP_PERMANENT_OR_SEMI_PERMANENT_WATER_BODY_DOMINATED_BY_WOODY_PLANTS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.TROPICAL_E_G_MANGROVE_PALMS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.TUNDRA_MOSSES_LICHENS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.VEGETABLE_CROPS a nmdc:CurLandUseEnum .

nmdc:CurLandUseEnum.VINE_CROPS_GRAPES a nmdc:CurLandUseEnum .

nmdc:RelToOxygenEnum a rdfs:Class .

nmdc:RelToOxygenEnum.AEROBE a nmdc:RelToOxygenEnum .

nmdc:RelToOxygenEnum.ANAEROBE a nmdc:RelToOxygenEnum .

nmdc:RelToOxygenEnum.FACULTATIVE a nmdc:RelToOxygenEnum .

nmdc:RelToOxygenEnum.MICROAEROPHILIC a nmdc:RelToOxygenEnum .

nmdc:RelToOxygenEnum.MICROANAEROBE a nmdc:RelToOxygenEnum .

nmdc:RelToOxygenEnum.OBLIGATE_AEROBE a nmdc:RelToOxygenEnum .

nmdc:RelToOxygenEnum.OBLIGATE_ANAEROBE a nmdc:RelToOxygenEnum .

nmdc:DnaContTypeEnum a rdfs:Class .

nmdc:DnaContTypeEnum.PLATE a nmdc:DnaContTypeEnum .

nmdc:DnaContTypeEnum.TUBE a nmdc:DnaContTypeEnum .

nmdc:FaoClassEnum a rdfs:Class .

nmdc:FaoClassEnum.ACRISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.ANDOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.ARENOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.CAMBISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.CHERNOZEMS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.FERRALSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.FLUVISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.GLEYSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.GREYZEMS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.GYPSISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.HISTOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.KASTANOZEMS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.LITHOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.LUVISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.NITOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.PHAEOZEMS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.PLANOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.PODZOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.PODZOLUVISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.RANKERS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.REGOSOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.RENDZINAS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.SOLONCHAKS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.SOLONETZ a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.VERTISOLS a nmdc:FaoClassEnum .

nmdc:FaoClassEnum.YERMOSOLS a nmdc:FaoClassEnum .

nmdc:ProcessingInstitutionEnum a rdfs:Class .

<https://ror.org/04rc0xn13> a nmdc:ProcessingInstitutionEnum ;
  rdfs:label "Environmental Molecular Sciences Laboratory" .

<https://ror.org/04xm1d337> a nmdc:ProcessingInstitutionEnum ;
  rdfs:label "Joint Genome Institute" .

<https://ror.org/0168r3w48> a nmdc:ProcessingInstitutionEnum ;
  rdfs:label "University of California, San Diego" .

nmdc:BioticRelationshipEnum a rdfs:Class .

nmdc:BioticRelationshipEnum.COMMENSAL a nmdc:BioticRelationshipEnum .

nmdc:BioticRelationshipEnum.FREE_LIVING a nmdc:BioticRelationshipEnum .

nmdc:BioticRelationshipEnum.PARASITE a nmdc:BioticRelationshipEnum .

nmdc:BioticRelationshipEnum.SYMBIONT a nmdc:BioticRelationshipEnum .