PREFIX KEGG.ORTHOLOGY: PREFIX MASSIVE: PREFIX biosample: PREFIX cas: PREFIX doi: PREFIX gnps.task: PREFIX gold: PREFIX img.taxon: PREFIX jgi.proposal: PREFIX kegg: PREFIX nmdc: PREFIX orcid: PREFIX rdf: PREFIX rdfs: PREFIX ror: PREFIX skos: PREFIX xsd: nmdc:PortionOfSubstance a rdfs:Class ; rdfs:label "Portion of a Substance" ; rdfs:comment "A portion of any matter of defined composition that has discrete existence, whose origin may be biological, mineral or chemical." . nmdc:mass a rdf:Property ; rdfs:label "mass" ; rdfs:comment "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." , "The output mass of the SubSampling Process." ; rdfs:range nmdc:QuantityValue . nmdc:source_concentration a rdf:Property ; rdfs:comment "When solutions A (containing substance X) and B are combined together, this slot captures the concentration of X in solution A" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf nmdc:concentration . nmdc:substance_role a rdf:Property ; rdfs:comment "The role of a substance in a process" ; rdfs:range nmdc:SubstanceRoleEnum . rdf:type a rdf:Property ; rdfs:label "Type" ; rdfs:comment "the class_uri of the class that has been instantiated" ; rdfs:range xsd:anyURI . nmdc:final_concentration a rdf:Property ; rdfs:comment "When solutions A (containing substance X) and B are combined together, this slot captures the concentration of X in the combination" ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf nmdc:concentration . nmdc:known_as a rdf:Property ; rdfs:comment "The substance from which a portion was taken." ; rdfs:range nmdc:ChemicalEntityEnum . nmdc:volume a rdf:Property ; rdfs:comment "The volume of a substance." , "The volume of sample filtered." , "The volume of the solvent/solute being used, not the input." , "The output volume of the SubSampling Process." ; rdfs:range nmdc:QuantityValue . nmdc:GeolocationValue a rdfs:Class ; rdfs:comment "A normalized value for a location on the earth's surface" ; rdfs:subClassOf nmdc:AttributeValue . a rdf:Property ; rdfs:comment "The latitude of a location." ; rdfs:range xsd:decimal . a rdf:Property ; rdfs:comment "The longitude of a location." ; rdfs:range xsd:decimal . nmdc:has_raw_value a rdf:Property ; rdfs:comment "The raw value for a geolocation should follow {latitude} {longitude}" , "Unnormalized atomic string representation, should in syntax {number} {unit}" , "The value that was specified for an annotation in raw form, i.e. a string. E.g. \"2 cm\" or \"2-4 cm\"" , "Original contributor string representation (unparsed)" ; rdfs:range xsd:string . nmdc:Sample a rdfs:Class ; rdfs:comment "A sample is a material entity that can be characterized by an experiment." ; rdfs:subClassOf nmdc:MaterialEntity . nmdc:name a rdf:Property ; rdfs:label "Name" ; rdfs:comment "A human readable label for an entity" , "A local identifier or name for the material sample collected. We recommend it be informative, concise, and consistent within your lab. It must be unique within a study. International Nucleotide Sequence Database Collaboration (INSDC) requires every sample name from a single submitter to be unique. We recommend that, in addition to populating this field, you populate the `source_mat_id` field with a globally-unique identifier." , "The full name of the Investigator. It should follow the format FIRST [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional." , "The name of the organization." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "Description" ; rdfs:comment "a human-readable description of a thing" , "A brief, link-free summary of a Study" ; rdfs:range xsd:string . nmdc:alternative_identifiers a rdf:Property ; rdfs:label "Alternative Identifiers" ; rdfs:comment "A list of alternative identifiers for the entity." , "Unique identifier for a study submitted to additional resources. Matches that which has been submitted to NMDC" , "Unique identifier for a biosample submitted to additional resources. Matches the entity that has been submitted to NMDC" ; rdfs:range xsd:anyURI . nmdc:DissolvingProcess a rdfs:Class ; rdfs:comment """A mixing step where a soluble component is mixed with a liquid component. """ ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:duration a rdf:Property ; rdfs:comment "The elapsed time of an activity." ; rdfs:range nmdc:QuantityValue . nmdc:start_date a rdf:Property ; rdfs:comment "The date on which any process or activity was started" ; rdfs:range xsd:string . nmdc:processing_institution a rdf:Property ; rdfs:comment "The organization that processed the sample." ; rdfs:range nmdc:ProcessingInstitutionEnum . nmdc:protocol_link a rdf:Property ; rdfs:range nmdc:Protocol . nmdc:has_failure_categorization a rdf:Property ; rdfs:range nmdc:FailureCategorization . nmdc:temperature a rdf:Property ; rdfs:comment "The value of a temperature measurement or temperature used in a process." ; rdfs:range nmdc:QuantityValue . nmdc:has_output a rdf:Property ; rdfs:comment "An output from a process." , "The mixed sample." , "The subsample." ; rdfs:range nmdc:ProcessedSample , nmdc:DataObject , nmdc:NamedThing , nmdc:Biosample , nmdc:OrganismSample . nmdc:qc_status a rdf:Property ; rdfs:comment "Stores information about the result of a process (ie the process of sequencing a library may have for qc_status of 'fail' if not enough data was generated)" ; rdfs:range nmdc:StatusEnum . nmdc:has_input a rdf:Property ; rdfs:comment "An input to a process." ; rdfs:range nmdc:Sample , nmdc:DataObject , nmdc:NamedThing , nmdc:Site , nmdc:OrganismSample . nmdc:instrument_used a rdf:Property ; rdfs:comment "What instrument was used during DataGeneration or MaterialProcessing." ; rdfs:range nmdc:Instrument . nmdc:qc_comment a rdf:Property ; rdfs:comment "Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file)." ; rdfs:range xsd:string . nmdc:end_date a rdf:Property ; rdfs:comment "The date on which any process or activity was ended" ; rdfs:range xsd:string . nmdc:substances_used a rdf:Property ; rdfs:comment "The substances that are combined to enable a ChemicalConversionProcess." , "The substance(s) that a processed sample is stored in." ; rdfs:range nmdc:PortionOfSubstance . nmdc:MassSpectrometry a rdfs:Class ; rdfs:comment "Spectrometry where the sample is converted into gaseous ions which are characterised by their mass-to-charge ratio and relative abundance." ; rdfs:subClassOf nmdc:DataGeneration . nmdc:has_chromatography_configuration a rdf:Property ; rdfs:comment "The identifier of the associated ChromatographyConfiguration, providing information about how a sample was introduced into the mass spectrometer." ; rdfs:range nmdc:ChromatographyConfiguration . nmdc:associated_studies a rdf:Property ; rdfs:label "Associated Studies" ; rdfs:comment "The study associated with a resource." ; rdfs:range nmdc:Study . a rdf:Property ; rdfs:comment "This slot links a study or a data generation to a credit association. The credit association is linked to an Agent (Person or Organization) and to a CRediT Contributor Roles term. Principal investigators are recorded here with applied_roles including Principal Investigator." ; rdfs:range . nmdc:instrument_instance_specifier a rdf:Property ; rdfs:comment "A unique value that identifies an individual instrument instance, such as a serial number or similar identifiers assigned by the manufacturer or user." ; rdfs:range xsd:string . nmdc:provenance_metadata a rdf:Property ; rdfs:label "Provenance Metadata" ; rdfs:comment "Provenance metadata for this DataGeneration, including when the record was added to and last modified in the NMDC database." , "Provides information about the provenance of a record." , "Provenance metadata for this Study, including when the record was added to and last modified in the NMDC database." , "Provenance metadata for this Biosample, including when the record was added to and last modified in the NMDC database." ; rdfs:range nmdc:ProvenanceMetadata . nmdc:has_mass_spectrometry_configuration a rdf:Property ; rdfs:comment "The identifier of the associated MassSpectrometryConfiguration." ; rdfs:range nmdc:MassSpectrometryConfiguration . nmdc:generates_calibration a rdf:Property ; rdfs:comment "calibration information is generated a process" ; rdfs:range nmdc:CalibrationInformation . nmdc:eluent_introduction_category a rdf:Property ; rdfs:comment "A high-level categorization for how the processed sample is introduced into a mass spectrometer." ; rdfs:range nmdc:EluentIntroductionCategoryEnum . nmdc:analyte_category a rdf:Property ; rdfs:comment """The type of analyte(s) that were measured in the data generation process """ ; rdfs:range nmdc:MassSpectrometryEnum , xsd:string , nmdc:NucleotideSequencingEnum . nmdc:Pooling a rdfs:Class ; rdfs:comment "physical combination of several instances of like material." ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:OntologyClass a rdfs:Class ; rdfs:comment "A representation of class defined in an external ontology." ; rdfs:subClassOf nmdc:NamedThing . nmdc:relations a rdf:Property ; rdfs:range nmdc:OntologyRelation . nmdc:definition a rdf:Property ; rdfs:comment "The definition of the ontology term as provided by the ontology." ; rdfs:range xsd:string . nmdc:is_obsolete a rdf:Property ; rdfs:comment "A boolean value indicating whether the ontology term is obsolete." ; rdfs:range xsd:boolean . nmdc:alternative_names a rdf:Property ; rdfs:label "Alternative Names" ; rdfs:comment "A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific. This should not be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)" ; rdfs:range xsd:string . nmdc:is_root a rdf:Property ; rdfs:comment "A boolean value indicating whether the ontology term is a root term; it is not a subclass of any other term." ; rdfs:range xsd:boolean . nmdc:QuantityValue a rdfs:Class ; rdfs:comment "A simple quantity, e.g. 2cm" ; rdfs:subClassOf nmdc:AttributeValue . nmdc:has_numeric_value a rdf:Property ; rdfs:comment "The number part of the quantity" , "Links a quantity value to a number" ; rdfs:range xsd:decimal . nmdc:has_minimum_numeric_value a rdf:Property ; rdfs:comment "The minimum value part, expressed as number, of the quantity value when the value covers a range." ; rdfs:range xsd:decimal ; rdfs:subPropertyOf nmdc:has_numeric_value . nmdc:has_maximum_numeric_value a rdf:Property ; rdfs:comment "The maximum value part, expressed as number, of the quantity value when the value covers a range." ; rdfs:range xsd:decimal ; rdfs:subPropertyOf nmdc:has_numeric_value . nmdc:has_unit a rdf:Property ; rdfs:comment "The unit of the quantity" , "UCUM unit code (required only when numeric value is present)" ; rdfs:range nmdc:UnitEnum , xsd:string . nmdc:ControlledIdentifiedTermValue a rdfs:Class ; rdfs:comment "A controlled term or class from an ontology, requiring the presence of term with an id" ; rdfs:subClassOf nmdc:ControlledTermValue . nmdc:term a rdf:Property ; rdfs:comment "pointer to an ontology class" ; rdfs:range nmdc:OntologyClass . nmdc:Organism a rdfs:Class ; rdfs:comment "A material entity that is a living or once-living individual. Organism instances represent the biological identity of what is in a sample, not the sample itself. Sub-species identity (strain, cultivar, lab isolate) is captured by slots on this class rather than via a separate Strain subclass." ; rdfs:seeAlso ; rdfs:subClassOf nmdc:MaterialEntity . nmdc:strain_name a rdf:Property ; rdfs:comment "Strain or cultivar name of the organism." ; rdfs:range xsd:string . nmdc:gc_content a rdf:Property ; rdfs:comment "Estimated GC content as a percentage." ; rdfs:range xsd:float . nmdc:organism_species a rdf:Property ; rdfs:comment "Species of the organism." ; rdfs:range xsd:string . nmdc:organism_genus a rdf:Property ; rdfs:comment "Genus of the organism." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "reference for biomaterial" ; rdfs:comment "Reference for the organism, preferentially a DOI when a primary publication or genome report exists; PMID and URL are also accepted per the MIxS ref_biomaterial pattern (`{PMID}|{DOI}|{URL}`). Reuses MIxS ref_biomaterial (MIXS:0000025)." ; rdfs:range nmdc:TextValue . nmdc:classified_as a rdf:Property ; rdfs:comment "Taxonomic classification of this organism." ; rdfs:range nmdc:NcbiTaxon . nmdc:isolate_name a rdf:Property ; rdfs:comment "Isolate or mutant name." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "estimated size" ; rdfs:comment "The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period" ; rdfs:range xsd:integer . nmdc:FiltrationProcess a rdfs:Class ; rdfs:comment "The process of segregation of phases; e.g. the separation of suspended solids from a liquid or gas, usually by forcing a carrier gas or liquid through a porous medium." ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:container_size a rdf:Property ; rdfs:comment "The volume of the container an analyte is stored in or an activity takes place in" ; rdfs:range nmdc:QuantityValue . nmdc:is_pressurized a rdf:Property ; rdfs:comment "Whether or not pressure was applied to a thing or process." ; rdfs:range xsd:boolean . nmdc:separation_method a rdf:Property ; rdfs:comment "The method that was used to separate a substance from a solution or mixture." ; rdfs:range nmdc:SeparationMethodEnum . nmdc:conditionings a rdf:Property ; rdfs:comment "Preliminary treatment of either phase with a suitable solution of the other phase (in the absence of main extractable solute(s)) so that when the subsequent equilibration is carried out changes in the (volume) phase ratio or in the concentrations of other components are minimized." ; rdfs:range xsd:string . nmdc:filter_pore_size a rdf:Property ; rdfs:comment "A quantitative or qualitative measurement of the physical dimensions of the pores in a material." ; rdfs:range nmdc:QuantityValue . nmdc:filtration_category a rdf:Property ; rdfs:comment "The type of conditioning applied to a filter, device, etc." ; rdfs:range xsd:string . nmdc:filter_material a rdf:Property ; rdfs:comment "A porous material on which solid particles present in air or other fluid which flows through it are largely caught and retained." ; rdfs:range xsd:string . nmdc:AttributeValue a rdfs:Class ; rdfs:comment "The value of an attribute of any NMDC entity. This object can hold both the unnormalized atomic value and the structured value." . nmdc:NamedThing a rdfs:Class ; rdfs:comment "a databased entity or concept/class" . nmdc:MetaboliteIdentification a rdfs:Class ; rdfs:comment "This is used to link a metabolomics analysis workflow to a specific metabolite" . nmdc:highest_similarity_score a rdf:Property ; rdfs:range xsd:float . nmdc:metabolite_identified a rdf:Property ; rdfs:comment "the specific metabolite identifier" ; rdfs:range xsd:string . nmdc:MetatranscriptomeAssembly a rdfs:Class ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:gc_std a rdf:Property ; rdfs:comment "Standard deviation of GC content of all contigs." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ctg_l_90 a rdf:Property ; rdfs:comment "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all contigs of that length or longer contains at least 90% of the sum of the lengths of all contigs." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:num_aligned_reads a rdf:Property ; rdfs:comment "The sequence count number of input reads aligned to assembled contigs." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:started_at_time a rdf:Property ; rdfs:range xsd:string . nmdc:gap_pct a rdf:Property ; rdfs:comment "The gap size percentage of all scaffolds." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ctg_logsum a rdf:Property ; rdfs:comment "Maximum contig length." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:num_input_reads a rdf:Property ; rdfs:comment "The sequence count number of input reads for assembly." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_l_gt_50_k a rdf:Property ; rdfs:comment "Total size in bp of all scaffolds greater than 50 KB." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_n_90 a rdf:Property ; rdfs:comment "Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:processing_institution_workflow_metadata a rdf:Property ; rdfs:comment "Information about how workflow results were generated when the processing is done by an external organziation (e.g., JGI) such as software tool name and version or pipeline name and version." ; rdfs:range xsd:string . nmdc:git_url a rdf:Property ; rdfs:comment "The url that points to the exact software repository location used to run a workflow" , "The url of the software repository used to generate the NMDC metadata record" ; rdfs:range xsd:string . nmdc:scaf_bp a rdf:Property ; rdfs:comment "Total size in bp of all scaffolds." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ctg_n_90 a rdf:Property ; rdfs:comment "Given a set of contigs, each with its own length, the N90 count is defined as the smallest number of contigs whose length sum makes up 90% of genome size." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:was_informed_by a rdf:Property ; rdfs:comment "The primary DataGeneration subclass that the WorkflowExecution subclass depends on." ; rdfs:range nmdc:NucleotideSequencing , nmdc:MassSpectrometry , nmdc:DataGeneration . nmdc:scaffolds a rdf:Property ; rdfs:comment "Total sequence count of all scaffolds." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:superseded_by a rdf:Property ; rdfs:comment "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record." ; rdfs:range nmdc:MetatranscriptomeAssembly , nmdc:MetaproteomicsAnalysis , nmdc:ReadBasedTaxonomyAnalysis , nmdc:MetatranscriptomeAnnotation , nmdc:WorkflowExecution , nmdc:ReadQcAnalysis , nmdc:MetabolomicsAnalysis , nmdc:MetagenomeAssembly , nmdc:MetatranscriptomeExpressionAnalysis , nmdc:NomAnalysis , nmdc:MagsAnalysis . nmdc:scaf_l_90 a rdf:Property ; rdfs:comment "The L90 statistic is less than or equal to the L50 statistic; it is the length for which the collection of all scaffolds of that length or longer contains at least 90% of the sum of the lengths of all scaffolds." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_logsum a rdf:Property ; rdfs:comment "The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase" ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ctg_l_50 a rdf:Property ; rdfs:comment "Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_l_50 a rdf:Property ; rdfs:comment "Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_powsum a rdf:Property ; rdfs:comment "Powersum of all scaffolds is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_n_gt_50_k a rdf:Property ; rdfs:comment "Total sequence count of scaffolds greater than 50 KB." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:version a rdf:Property ; rdfs:comment "The NMDC release tag for a given workflow release used for data processing. If workflows are processed externally, as denoted by processing_institution, this value represents the best mapping between a processing institution's (e.g., JGI) workflow metadata and a NMDC tagged release." , "The version tag of the software used to generate the NMDC metadata record" ; rdfs:range xsd:string . nmdc:execution_resource a rdf:Property ; rdfs:comment "The computing resource or facility where the workflow was executed." ; rdfs:range nmdc:ExecutionResourceEnum . nmdc:ctg_n_50 a rdf:Property ; rdfs:comment "Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:contigs a rdf:Property ; rdfs:comment "The sum of the (length*log(length)) of all contigs, times some constant. Increase the contiguity, the score will increase" ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:insdc_assembly_identifiers a rdf:Property ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:assembly_identifiers . nmdc:gc_avg a rdf:Property ; rdfs:comment "Average of GC content of all contigs." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:contig_bp a rdf:Property ; rdfs:comment "Total size in bp of all contigs." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:asm_score a rdf:Property ; rdfs:comment "A score for comparing metagenomic assembly quality from same sample." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ctg_powsum a rdf:Property ; rdfs:comment "Powersum of all contigs is the same as logsum except that it uses the sum of (length*(length^P)) for some power P (default P=0.25)." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_max a rdf:Property ; rdfs:comment "Maximum scaffold length." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_n_50 a rdf:Property ; rdfs:comment "Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:scaf_pct_gt_50_k a rdf:Property ; rdfs:comment "Total sequence size percentage of scaffolds greater than 50 KB." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ended_at_time a rdf:Property ; rdfs:range xsd:string . nmdc:ctg_max a rdf:Property ; rdfs:comment "Maximum contig length." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:metagenome_assembly_parameter . nmdc:ImageValue a rdfs:Class ; rdfs:comment "An attribute value representing an image." ; rdfs:subClassOf nmdc:AttributeValue . nmdc:display_order a rdf:Property ; rdfs:comment "When rendering information, this attribute to specify the order in which the information should be rendered." ; rdfs:range xsd:integer . nmdc:url a rdf:Property ; rdfs:range xsd:string . nmdc:MetaproteomicsAnalysis a rdfs:Class ; rdfs:subClassOf nmdc:AnnotatingWorkflow . nmdc:razor_protein_count a rdf:Property ; rdfs:comment "The minimal protein set that describes the unique peptide sequences identified after applying Razor Protein parsimony." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:metaproteomics_analysis_category a rdf:Property ; rdfs:comment "The category of metaproteomics analysis being performed." ; rdfs:range nmdc:MetaproteomicsAnalysisCategoryEnum . nmdc:mean_peptide_count a rdf:Property ; rdfs:comment "The average number of peptides per protein identified in the metaproteomics analysis." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:total_protein_count a rdf:Property ; rdfs:comment "The total number of distinct proteins identified in the metaproteomics analysis." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:peptide_to_spectrum_match_count a rdf:Property ; rdfs:comment "Total number of MS2 spectra with a false discovery rate passing peptide match." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:peptide_to_spectrum_match_rate a rdf:Property ; rdfs:comment "The percentage of peptide-to-spectrum matches relative to the total number of spectra analyzed." ; rdfs:range nmdc:QuantityValue ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:unique_peptide_seq_count a rdf:Property ; rdfs:comment "The number of distinct peptide sequences identified in the LC-MS/MS file." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:ProcessedSample a rdfs:Class ; rdfs:label "Processed Sample" ; rdfs:subClassOf nmdc:Sample . nmdc:biomaterial_purity a rdf:Property ; rdfs:comment "A measure of the purity of a biomaterial sample" ; rdfs:range nmdc:QuantityValue . nmdc:dna_absorb_1 a rdf:Property ; rdfs:label "DNA absorbance 260/280" ; rdfs:comment "260/280 measurement of DNA sample purity" ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:biomaterial_purity . nmdc:dna_concentration a rdf:Property ; rdfs:label "DNA concentration in ng/ul" ; rdfs:seeAlso nmdc:nucleic_acid_concentration ; rdfs:range xsd:float . nmdc:sampled_portion a rdf:Property ; rdfs:comment "The portion of the sample that is taken for downstream activity." ; rdfs:range nmdc:SamplePortionEnum . nmdc:external_database_identifiers a rdf:Property ; rdfs:comment "Link to corresponding identifier in external database" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:alternative_identifiers . nmdc:InformationObject a rdfs:Class ; rdfs:comment "Any data or knowledge that reduces uncertainty or enhances understanding about a system, process, or entity." ; rdfs:seeAlso nmdc:AttributeValue ; rdfs:subClassOf nmdc:NamedThing . a rdfs:Class ; rdfs:label "Planned Process" ; rdfs:comment "A named thing that is executed according to a plan." ; rdfs:subClassOf nmdc:NamedThing . nmdc:FieldResearchSite a rdfs:Class ; rdfs:label "Field Research Site" ; rdfs:comment "A site, outside of a laboratory, from which biosamples may be collected." ; rdfs:subClassOf nmdc:Site . a rdf:Property ; rdfs:label "elevation" , "elevation, meters" ; rdfs:comment "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit" ; rdfs:range xsd:float . a rdf:Property ; rdfs:label "geographic location (country and/or sea,region)" ; rdfs:comment "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "current vegetation" ; rdfs:comment "Vegetation classification from one or more standard classification systems, or agricultural crop" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:comment "Links a resource to another resource that either logically or physically includes it." , "Links a study or consortium to a parent (or umbrella) study or consortium." ; rdfs:range nmdc:FieldResearchSite , nmdc:Study . a rdf:Property ; rdfs:label "soil_taxonomic/local classification" ; rdfs:comment "Soil classification based on local soil classification system" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "geographic location (latitude and longitude)" ; rdfs:comment "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees, limited to 8 decimal points, and in WGS84 system" ; rdfs:range nmdc:GeolocationValue . nmdc:habitat a rdf:Property ; rdfs:label "Habitat" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "soil type" ; rdfs:comment "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes" ; rdfs:range nmdc:TextValue . nmdc:OrganismSample a rdfs:Class ; rdfs:label "Organism Sample" ; rdfs:comment "A material sample in which all cells are expected to share the same genome. This includes microbial colony picks, pellets from presumably pure liquid cultures, plant tissue clips, fungal fruiting body sections, and similar materials where the submitter intends to study a single organism. The purity expectation may be contradicted by sequencing results." ; rdfs:seeAlso ; rdfs:subClassOf nmdc:Sample . nmdc:analysis_type a rdf:Property ; rdfs:label "analysis/data type" ; rdfs:comment "Select all the data types associated or available for this biosample" ; rdfs:range nmdc:AnalysisTypeEnum . nmdc:gold_organism_identifiers a rdf:Property ; rdfs:comment "identifiers for corresponding organism in GOLD" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:external_database_identifiers . nmdc:expected_organism a rdf:Property ; rdfs:comment "The organism that the submitter expects to be present in this sample. May be contradicted by sequencing results." ; rdfs:range nmdc:Organism . a rdf:Property ; rdfs:label "source material identifiers" , "source material identifier" ; rdfs:comment "Culture collection identifier for the source of this organism sample." , "A globally unique identifier assigned to the biological sample." ; rdfs:seeAlso ; rdfs:range nmdc:TextValue . nmdc:embargoed a rdf:Property ; rdfs:label "Embargoed" ; rdfs:comment "If true, the data are embargoed and not available for public access." ; rdfs:range xsd:boolean . a rdf:Property ; rdfs:label "collection date" ; rdfs:comment "The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant" ; rdfs:range nmdc:TimestampValue . a rdf:Property ; rdfs:label "host taxid" ; rdfs:comment "NCBI taxon id of the host, e.g. 9606" ; rdfs:range nmdc:ControlledIdentifiedTermValue . a rdf:Property ; rdfs:label "ploidy" ; rdfs:comment "The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, triploid, tetraploid). It has implications for the downstream study of duplicated gene and regions of the genomes (and perhaps for difficulties in assembly). For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer to http://purl.bioontology.org/ontology/PATO" ; rdfs:range nmdc:PloidyEnum . a rdf:Property ; rdfs:label "sample name" ; rdfs:comment "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name" ; rdfs:range xsd:string . nmdc:DataGeneration a rdfs:Class ; rdfs:comment "The methods and processes used to generate omics data from a biosample or organism." ; rdfs:subClassOf nmdc:DataEmitterProcess . nmdc:ReadBasedTaxonomyAnalysis a rdfs:Class ; rdfs:label "Read based analysis activity" ; rdfs:comment "A workflow execution activity that performs taxonomy classification using sequencing reads" ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:GeneProduct a rdfs:Class ; rdfs:comment "A molecule encoded by a gene that has an evolved function" ; rdfs:subClassOf nmdc:NamedThing . nmdc:OntologyRelation a rdfs:Class ; rdfs:comment "A relationship between two ontology classes as specified either directly in the ontology in the form of axioms (statements or assertions that defines rules or constraints in an ontology) or inferred via reasoning. The association object is defined by two terms (the subject and the object) and the relationship between them (the predicate). Because ontologies often have a plethora of relationships/axiom types and can have additional metadata on the relationship itself, these kinds of relationships are structured as a class instead of a simple set of slots on OntologyClass itself." . nmdc:object a rdf:Property ; rdfs:range nmdc:OntologyClass . nmdc:predicate a rdf:Property ; rdfs:range nmdc:OntologyClass . nmdc:subject a rdf:Property ; rdfs:range nmdc:OntologyClass , nmdc:GeneProduct . nmdc:EukEval a rdfs:Class ; rdfs:comment "This class contains information pertaining to evaluating if a Metagenome-Assembled Genome (MAG) is eukaryotic." . nmdc:completeness a rdf:Property ; rdfs:comment "Estimate of the completeness of the metagenome-assembled genome, estimated by a tool like CheckM." ; rdfs:range xsd:float . nmdc:ncbi_lineage a rdf:Property ; rdfs:comment "Comma delimited ordered list of NCBI taxonomy names." ; rdfs:range xsd:string . nmdc:ncbi_lineage_tax_ids a rdf:Property ; rdfs:comment "Dash-delimited ordered list of NCBI taxonomy identifiers (TaxId)" ; rdfs:range xsd:string . nmdc:contamination a rdf:Property ; rdfs:comment "Estimate of the completeness of the metagenome-assembled genome, estimated by a tool like CheckM." ; rdfs:range xsd:float . nmdc:FunctionalAnnotation a rdfs:Class ; rdfs:comment "An assignment of a function term (e.g. reaction or pathway) that is executed by a gene product, or which the gene product plays an active role in. Functional annotations can be assigned manually by curators, or automatically in workflows. In the context of NMDC, all function annotation is performed automatically, typically using HMM or Blast type methods" ; rdfs:seeAlso , . nmdc:was_generated_by a rdf:Property ; rdfs:comment "provenance for the annotation." ; rdfs:range nmdc:MetagenomeAnnotation , nmdc:AnnotatingWorkflow , nmdc:DataEmitterProcess . nmdc:has_function a rdf:Property ; rdfs:range xsd:string . nmdc:feature_category a rdf:Property ; rdfs:comment "A Sequence Ontology term that describes the category of a feature" ; rdfs:range nmdc:ControlledIdentifiedTermValue . nmdc:Doi a rdfs:Class ; rdfs:comment "A centrally registered identifier symbol used to uniquely identify objects given by the International DOI Foundation. The DOI system is particularly used for electronic documents." . nmdc:doi_value a rdf:Property ; rdfs:comment "A digital object identifier, which is intended to persistantly identify some resource on the web." ; rdfs:range xsd:anyURI . nmdc:doi_provider a rdf:Property ; rdfs:comment "The authority, or organization, the DOI is associated with." ; rdfs:range nmdc:DoiProviderEnum . nmdc:doi_category a rdf:Property ; rdfs:comment "The resource type the corresponding doi resolves to." ; rdfs:range nmdc:DoiCategoryEnum . nmdc:MetatranscriptomeAnnotation a rdfs:Class ; rdfs:subClassOf nmdc:AnnotatingWorkflow . nmdc:gold_analysis_project_identifiers a rdf:Property ; rdfs:comment "identifiers for corresponding analysis projects in GOLD" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:analysis_identifiers . nmdc:img_identifiers a rdf:Property ; rdfs:label "IMG Identifiers" ; rdfs:comment "A list of identifiers that relate the biosample to records in the IMG database." ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:ChemicalConversionProcess a rdfs:Class ; rdfs:comment """A process that results in the interconversion of chemical species by a reaction to transform the reagents into products. """ ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:substances_volume a rdf:Property ; rdfs:comment "The volume of the combined substances that was included in a ChemicalConversionProcess." ; rdfs:range nmdc:QuantityValue . nmdc:chemical_conversion_category a rdf:Property ; rdfs:comment "The type of chemical conversion process." ; rdfs:range nmdc:ChemicalConversionCategoryEnum . nmdc:Study a rdfs:Class ; rdfs:comment "A study summarizes the overall goal of a research initiative and outlines the key objective of its underlying projects." ; rdfs:subClassOf nmdc:NamedThing . nmdc:ecosystem_category a rdf:Property ; rdfs:label "Ecosystem Category" ; rdfs:comment "Ecosystem categories represent divisions within the ecosystem based on specific characteristics of the environment from where an organism or sample is isolated. Ecosystem category is in position 2/5 in a GOLD path." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:gold_path_field . nmdc:mgnify_project_identifiers a rdf:Property ; rdfs:comment "identifiers for corresponding project in MGnify" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:mgnify_identifiers , nmdc:study_identifiers . nmdc:gnps_task_identifiers a rdf:Property ; rdfs:label "GNPS task identifiers" ; rdfs:comment "identifiers that link a NMDC study to a web-based report about metabolomics analysis progress and results" ; rdfs:seeAlso ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:gnps_identifiers , nmdc:study_identifiers . nmdc:emsl_project_identifiers a rdf:Property ; rdfs:label "EMSL Project Identifiers" ; rdfs:comment "Identifiers that link a NMDC study to the EMSL user facility website hosting the project description of an EMSL user project" ; rdfs:seeAlso ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:emsl_identifiers , nmdc:study_identifiers . nmdc:notes a rdf:Property ; rdfs:range xsd:string . nmdc:funding_sources a rdf:Property ; rdfs:comment "A list of organizations, along with the award numbers, that underwrite financial support for projects of a particular type. Typically, they process applications and award funds to the chosen qualified applicants." ; rdfs:range xsd:string . nmdc:jgi_portal_study_identifiers a rdf:Property ; rdfs:label "JGI Portal Study identifiers" ; rdfs:comment "Identifiers that link a NMDC study to a website hosting raw and analyzed data for a JGI proposal. The suffix of the curie can used to query the GOLD API and is interoperable with an award DOI from OSTI and a GOLD study identifier." ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:jgi_portal_identifiers , nmdc:study_identifiers . nmdc:websites a rdf:Property ; rdfs:comment "A list of websites that are associated with the entity." ; rdfs:seeAlso nmdc:url ; rdfs:range xsd:string . nmdc:study_category a rdf:Property ; rdfs:comment "The type of research initiative" ; rdfs:range nmdc:StudyCategoryEnum . nmdc:alternative_titles a rdf:Property ; rdfs:comment "A list of alternative titles for the entity. The distinction between title and alternative titles is application-specific." ; rdfs:range xsd:string . nmdc:related_identifiers a rdf:Property ; rdfs:label "Related Identifiers" ; rdfs:comment "Unique identifier for a study submitted to additional resources. Similar, but not necessarily identical to that which has been submitted to NMDC" ; rdfs:range xsd:string . nmdc:neon_study_identifiers a rdf:Property ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:neon_identifiers , nmdc:study_identifiers . nmdc:ecosystem_type a rdf:Property ; rdfs:label "Ecosystem Type" ; rdfs:comment "Ecosystem types represent things having common characteristics within the Ecosystem Category. These common characteristics based grouping is still broad but specific to the characteristics of a given environment. Ecosystem type is in position 3/5 in a GOLD path." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:gold_path_field . nmdc:objective a rdf:Property ; rdfs:comment "The scientific objectives associated with the entity. It SHOULD correspond to scientific norms for objectives field in a structured abstract." ; rdfs:range xsd:string . nmdc:insdc_bioproject_identifiers a rdf:Property ; rdfs:comment "Unique identifier for a bioproject submitted to INSDC that relates to the NMDC submitted study." , "identifiers for corresponding project in INSDC Bioproject" ; rdfs:seeAlso , ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:study_identifiers . nmdc:gold_study_identifiers a rdf:Property ; rdfs:label "GOLD Study Identifiers" ; rdfs:comment "identifiers for corresponding project(s) in GOLD" ; rdfs:seeAlso ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:study_identifiers . nmdc:ecosystem a rdf:Property ; rdfs:label "Ecosystem" ; rdfs:comment "An ecosystem is a combination of a physical environment (abiotic factors) and all the organisms (biotic factors) that interact with this environment. Ecosystem is in position 1/5 in a GOLD path." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:gold_path_field . nmdc:alternative_descriptions a rdf:Property ; rdfs:comment "A list of alternative descriptions for the entity. The distinction between description and alternative descriptions is application-specific." ; rdfs:range xsd:string . nmdc:associated_dois a rdf:Property ; rdfs:comment "A list of DOIs associated with a resource, such as a list of DOIS associated with a Study." ; rdfs:range nmdc:Doi . nmdc:homepage_website a rdf:Property ; rdfs:comment "The website address (URL) of an entity's homepage." ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:websites . nmdc:study_image a rdf:Property ; rdfs:comment "Links a study to one or more images." ; rdfs:range nmdc:ImageValue . nmdc:specific_ecosystem a rdf:Property ; rdfs:label "Specific Ecosystem" ; rdfs:comment "Specific ecosystems represent specific features of the environment like aphotic zone in an ocean or gastric mucosa within a host digestive system. Specific ecosystem is in position 5/5 in a GOLD path." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:gold_path_field . nmdc:ecosystem_subtype a rdf:Property ; rdfs:label "Ecosystem Subtype" ; rdfs:comment "Ecosystem subtypes represent further subdivision of Ecosystem types into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD path." ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:gold_path_field . nmdc:title a rdf:Property ; rdfs:comment "A name given to the entity that differs from the name/label programmatically assigned to it." ; rdfs:range xsd:string . nmdc:ChromatographyConfiguration a rdfs:Class ; rdfs:comment "A set of parameters that define and control the actions of a chromatography process." ; rdfs:subClassOf nmdc:Configuration . nmdc:ordered_mobile_phases a rdf:Property ; rdfs:comment "The solution(s) that moves through a chromatography column." ; rdfs:range nmdc:MobilePhaseSegment . nmdc:stationary_phase a rdf:Property ; rdfs:comment "The material the stationary phase is comprised of used in chromatography." ; rdfs:range nmdc:StationaryPhaseEnum . nmdc:chromatographic_category a rdf:Property ; rdfs:comment "The type of chromatography used in a process." ; rdfs:range nmdc:ChromatographicCategoryEnum . nmdc:WorkflowExecution a rdfs:Class ; rdfs:comment "Represents an instance of an execution of a particular workflow" ; rdfs:subClassOf nmdc:DataEmitterProcess . nmdc:ReadQcAnalysis a rdfs:Class ; rdfs:label "Read quality control analysis activity" ; rdfs:comment "A workflow execution activity that performs quality control on raw Illumina reads including quality trimming, artifact removal, linker trimming, adapter trimming, spike-in removal, and human/cat/dog/mouse/microbe contaminant removal" ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:input_read_bases a rdf:Property ; rdfs:comment "TODO " ; rdfs:range xsd:float . nmdc:output_read_bases a rdf:Property ; rdfs:comment "TODO" ; rdfs:range xsd:float . nmdc:input_base_count a rdf:Property ; rdfs:comment "The nucleotide base count number of input reads for QC analysis." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:read_qc_analysis_statistic . nmdc:input_read_count a rdf:Property ; rdfs:comment "The sequence count number of input reads for QC analysis." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:read_qc_analysis_statistic . nmdc:output_base_count a rdf:Property ; rdfs:comment "After QC analysis nucleotide base count number." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:read_qc_analysis_statistic . nmdc:output_read_count a rdf:Property ; rdfs:comment "After QC analysis sequence count number." ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:read_qc_analysis_statistic . nmdc:MetabolomicsAnalysis a rdfs:Class ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:c_13_isotopologue_count a rdf:Property ; rdfs:comment "The number of two-dimensional mass-to-charge (m/z) versus retention time features that have been isotopically characterized as either 13C-containing isotopologues or monoisotopic (12C-only) features." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:peak_assignment_count a rdf:Property ; rdfs:comment "The total number of two dimensional mass to charge (m/z) : retention time features with associated metabolite identification in the metabolomics or lipidomics analysis." , "The number of m/z peaks with assigned molecular formulas in the analysis." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:has_metabolite_identifications a rdf:Property ; rdfs:range nmdc:MetaboliteIdentification . nmdc:metabolomics_analysis_category a rdf:Property ; rdfs:comment "The category of metabolomics analysis being performed." ; rdfs:range nmdc:MetabolomicsAnalysisCategoryEnum . nmdc:uses_calibration a rdf:Property ; rdfs:comment "calibration information is used by a process" ; rdfs:range nmdc:CalibrationInformation . nmdc:peak_count a rdf:Property ; rdfs:comment "The total number of two dimensional mass to charge (m/z) : retention time features detected in the metabolomics analysis." , "The total number of peaks detected in the analysis." ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:ms_analysis_qc_metric . nmdc:Biosample a rdfs:Class ; rdfs:comment "Biological source material which can be characterized by an experiment." ; rdfs:subClassOf nmdc:Sample . a rdf:Property ; rdfs:label "broad-scale environmental context" ; rdfs:comment "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS" ; rdfs:range nmdc:ControlledIdentifiedTermValue ; rdfs:subPropertyOf nmdc:mixs_env_triad_field . a rdf:Property ; rdfs:label "biocide administration method" ; rdfs:comment "Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "host body temperature" ; rdfs:comment "Core body temperature of the host when sample was collected" ; rdfs:range nmdc:QuantityValue . nmdc:proport_woa_temperature a rdf:Property ; rdfs:label "Proport WOA Temperature" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "window area/size" ; rdfs:comment "The window's length and width" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "biotic regimen" ; rdfs:comment "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "ceiling signs of water/mold" ; rdfs:comment "Signs of the presence of mold or mildew on the ceiling" ; rdfs:range nmdc:MoldVisibilityEnum . a rdf:Property ; rdfs:label "glucosidase activity" ; rdfs:comment "Measurement of glucosidase activity" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "hydrocarbon type produced" ; rdfs:comment "Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:HcProducedEnum . a rdf:Property ; rdfs:label "reactor type" ; rdfs:comment "Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "rooting medium macronutrients" ; rdfs:comment "Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "date last rain" ; rdfs:comment "The date of the last time it rained" ; rdfs:range nmdc:TimestampValue . a rdf:Property ; rdfs:label "wall construction type" ; rdfs:comment "The building class of the wall defined by the composition of the building elements and fire-resistance rating" ; rdfs:range nmdc:WallConstTypeEnum . a rdf:Property ; rdfs:label "surface moisture" ; rdfs:comment "Water held on a surface" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "local environmental context" ; rdfs:comment "Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS" ; rdfs:range nmdc:ControlledIdentifiedTermValue ; rdfs:subPropertyOf nmdc:mixs_env_triad_field . nmdc:sample_type a rdf:Property ; rdfs:label "sample type" ; rdfs:comment "Type of sample being submitted" ; rdfs:range nmdc:SampleTypeEnum . a rdf:Property ; rdfs:label "occupancy documentation" ; rdfs:comment "The type of documentation of occupancy" ; rdfs:range nmdc:OccupDocumentEnum . a rdf:Property ; rdfs:label "observed biotic relationship" ; rdfs:comment "Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object" ; rdfs:range nmdc:BioticRelationshipEnum . a rdf:Property ; rdfs:label "growth facility" ; rdfs:comment "Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see https://cropontology.org/." ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "wastewater type" ; rdfs:comment "The origin of wastewater such as human waste, rainfall, storm drains, etc" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "dew point" ; rdfs:comment "The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "well identification number" ; rdfs:comment "A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)" ; rdfs:range nmdc:TextValue . nmdc:lbceq a rdf:Property ; rdfs:label "lime buffer capacity (after 5 day incubation)" ; rdfs:comment "lime buffer capacity, determined at equilibrium after 5 day incubation" ; rdfs:seeAlso ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "secondary treatment" ; rdfs:comment "The process for substantially degrading the biological content of the sewage" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "alkalinity" ; rdfs:comment "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "tertiary treatment" ; rdfs:comment "The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "n-alkanes" ; rdfs:comment "Concentration of n-alkanes; can include multiple n-alkanes" ; rdfs:range nmdc:TextValue . nmdc:community a rdf:Property ; rdfs:label "Community" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "host subspecific genetic lineage" ; rdfs:comment "Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "train station collection location" ; rdfs:comment "The train station collection location" ; rdfs:range nmdc:TrainStatLocEnum . a rdf:Property ; rdfs:label "experimental factor" ; rdfs:comment "Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)" ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "solar irradiance" ; rdfs:comment "The amount of solar energy that arrives at a specific area of a surface during a specific time interval" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "dissolved inorganic carbon" ; rdfs:comment "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host body habitat" ; rdfs:comment "Original body habitat where the sample was obtained from" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "rooting medium carbon" ; rdfs:comment "Source of organic carbon in the culture rooting medium" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "growth hormone regimen" ; rdfs:comment "Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens" ; rdfs:range nmdc:TextValue . nmdc:microbial_biomass_n a rdf:Property ; rdfs:label "microbial biomass nitrogen" ; rdfs:comment "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "phosphate" ; rdfs:comment "Concentration of phosphate" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "hallway/corridor count" ; rdfs:comment "The total count of hallways and corridors in the built structure" ; rdfs:range nmdc:TextValue . nmdc:ecosystem_path_id a rdf:Property ; rdfs:label "GOLD Ecosystem Path ID" ; rdfs:comment "A unique id representing the GOLD classifiers associated with a sample." ; rdfs:seeAlso ; rdfs:range xsd:integer . a rdf:Property ; rdfs:label "emulsions" ; rdfs:comment "Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "bacterial production" ; rdfs:comment "Bacterial production in the water column measured by isotope uptake" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host age" ; rdfs:comment "Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "light type" ; rdfs:comment "Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light" ; rdfs:range nmdc:LightTypeEnum . a rdf:Property ; rdfs:label "pH method" ; rdfs:comment "Reference or method used in determining pH" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "door type, metal" ; rdfs:comment "The type of metal door" ; rdfs:range nmdc:DoorTypeMetalEnum . a rdf:Property ; rdfs:label "asphaltenes wt%" ; rdfs:comment "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "train line" ; rdfs:comment "The subway line name" ; rdfs:range nmdc:TrainLineEnum . a rdf:Property ; rdfs:label "room type" ; rdfs:comment "The main purpose or activity of the sampling room. A room is any distinguishable space within a structure" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "gravidity" ; rdfs:comment "Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "depth (TVDSS) of hydrocarbon resource temperature" ; rdfs:comment "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host blood pressure systolic" ; rdfs:comment "Resting systolic blood pressure, measured as mm mercury" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "history/extreme events" ; rdfs:comment "Unusual physical events that may have affected microbial populations" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "rooms that share a door with sampling room" ; rdfs:comment "List of room(s) (room number, room name) sharing a door with the sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "pressure" ; rdfs:comment "Pressure to which the sample is subject to, in atmospheres" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "built structure setting" ; rdfs:comment "The characterization of the location of the built structure as high or low human density" ; rdfs:range nmdc:BuiltStrucSetEnum . nmdc:location a rdf:Property ; rdfs:label "Location" ; rdfs:range xsd:string . nmdc:biosample_categories a rdf:Property ; rdfs:label "Categories the biosample belongs to" ; rdfs:range nmdc:BiosampleCategoryEnum . a rdf:Property ; rdfs:label "benzene" ; rdfs:comment "Concentration of benzene in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "herbicide regimen" ; rdfs:comment "Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "window vertical position" ; rdfs:comment "The vertical position of the window on the wall" ; rdfs:range nmdc:WindowVertPosEnum . a rdf:Property ; rdfs:label "alkyl diethers" ; rdfs:comment "Concentration of alkyl diethers" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "biological status" ; rdfs:comment "The level of genome modification" ; rdfs:range nmdc:BiolStatEnum . a rdf:Property ; rdfs:label "number of houseplants" ; rdfs:comment "The number of plant(s) in the sampling space" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sample storage temperature" ; rdfs:comment "Temperature at which sample was stored" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "light regimen" ; rdfs:comment "Information about treatment(s) involving exposure to light, including both light intensity and quality" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "source rock lithology" ; rdfs:comment "Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:SrLithologyEnum . a rdf:Property ; rdfs:label "xylene" ; rdfs:comment "Concentration of xylene in the sample" ; rdfs:range nmdc:QuantityValue . nmdc:other_treatment a rdf:Property ; rdfs:label "other treatments" ; rdfs:comment "Other treatments applied to your samples that are not applicable to the provided fields" ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "door condition" ; rdfs:comment "The physical condition of the door" ; rdfs:range nmdc:DamagedRupturedEnum . a rdf:Property ; rdfs:label "exterior door count" ; rdfs:comment "The number of exterior doors in the built structure" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "preservative added to sample" ; rdfs:comment "Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "heating and cooling system type" ; rdfs:comment "Methods of conditioning or heating a room or building" ; rdfs:range nmdc:HeatCoolTypeEnum . a rdf:Property ; rdfs:label "current vegetation method" ; rdfs:comment "Reference or method used in vegetation classification" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "history/fire" ; rdfs:comment "Historical and/or physical evidence of fire" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "link to climate information" ; rdfs:comment "Link to climate resource" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "heavy metals/ extreme unusual properties" ; rdfs:comment "Heavy metals present in the sample and their concentrations." ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "history/flooding" ; rdfs:comment "Historical and/or physical evidence of flooding" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "oxygenation status of sample" ; rdfs:comment "Oxygenation status of sample" ; rdfs:range nmdc:OxyStatSampEnum . a rdf:Property ; rdfs:label "room architectural elements" ; rdfs:comment "The unique details and component parts that, together, form the architecture of a distinguishable space within a built structure" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "building setting" ; rdfs:comment "A location (geography) where a building is set" ; rdfs:range nmdc:BuildingSettingEnum . a rdf:Property ; rdfs:label "soil texture method" ; rdfs:comment "Reference or method used in determining soil texture" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "field name" ; rdfs:comment "Name of the hydrocarbon field (e.g. Albacora)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "door signs of water/mold" ; rdfs:comment "Signs of the presence of mold or mildew on a door" ; rdfs:range nmdc:MoldVisibilityEnum . a rdf:Property ; rdfs:label "production start date" ; rdfs:comment "Date of field's first production" ; rdfs:range nmdc:TimestampValue . a rdf:Property ; rdfs:label "size-fraction upper threshold" ; rdfs:comment "Mesh or pore size of the device used to retain the sample. Materials larger than the size threshold are excluded from the sample." ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host last meal" ; rdfs:comment "Content of last meal and time since feeding; can include multiple values" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "soil type method" ; rdfs:comment "Reference or method used in determining soil series name or other lower-level classification" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "alkalinity method" ; rdfs:comment "Method used for alkalinity measurement" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "link to classification information" ; rdfs:comment "Link to digitized soil maps or other soil classification information" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "profile position" ; rdfs:comment "Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas" ; rdfs:range nmdc:ProfilePositionEnum . a rdf:Property ; rdfs:label "growth habit" ; rdfs:comment "Characteristic shape, appearance or growth form of a plant species" ; rdfs:range nmdc:GrowthHabitEnum . a rdf:Property ; rdfs:label "mean friction velocity" ; rdfs:comment "Measurement of mean friction velocity" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "aluminum saturation method/ extreme unusual properties" ; rdfs:comment "Reference or method used in determining Aluminum saturation" ; rdfs:range xsd:string . nmdc:dna_isolate_meth a rdf:Property ; rdfs:label "DNA isolation method" ; rdfs:comment "Describe the method/protocol/kit used to extract DNA/RNA." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "biocide administration" ; rdfs:comment "List of biocides (commercial name of product and supplier) and date of administration" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "soluble reactive phosphorus" ; rdfs:comment "Concentration of soluble reactive phosphorus" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "ammonium" ; rdfs:comment "Concentration of ammonium in the sample" ; rdfs:range nmdc:QuantityValue . nmdc:filter_method a rdf:Property ; rdfs:label "filter method" ; rdfs:comment "Type of filter used or how the sample was filtered" ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "water cut" ; rdfs:comment "Current amount of water (%) in a produced fluid stream; or the average of the combined streams" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host sex" ; rdfs:comment "Gender or physical sex of the host" ; rdfs:range xsd:string . nmdc:org_nitro_method a rdf:Property ; rdfs:label "organic nitrogen method" ; rdfs:comment "Method used for obtaining organic nitrogen" ; rdfs:seeAlso , ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sewage type" ; rdfs:comment "Type of wastewater treatment plant as municipial or industrial" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "mean annual precipitation" ; rdfs:comment "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "aerospace structure" ; rdfs:comment "Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together" ; rdfs:range nmdc:AeroStrucEnum . a rdf:Property ; rdfs:label "soil texture measurement" ; rdfs:comment "The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "wall texture" ; rdfs:comment "The feel, appearance, or consistency of a wall surface" ; rdfs:range nmdc:CeilingWallTextureEnum . a rdf:Property ; rdfs:label "resins wt%" ; rdfs:comment "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "organic particles" ; rdfs:comment "Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "floor structure" ; rdfs:comment "Refers to the structural elements and subfloor upon which the finish flooring is installed" ; rdfs:range nmdc:FloorStrucEnum . a rdf:Property ; rdfs:label "surface material" ; rdfs:comment "Surface materials at the point of sampling" ; rdfs:range nmdc:SurfMaterialEnum . nmdc:non_microb_biomass a rdf:Property ; rdfs:label "non-microbial biomass" ; rdfs:comment "Amount of biomass; should include the name for the part of biomass measured, e.g.insect, plant, total. Can include multiple measurements separated by ;" ; rdfs:seeAlso , ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "dissolved inorganic phosphorus" ; rdfs:comment "Concentration of dissolved inorganic phosphorus in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "pre-treatment" ; rdfs:comment "The process of pre-treatment removes materials that can be easily collected from the raw wastewater" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "atmospheric data" ; rdfs:comment "Measurement of atmospheric data; can include multiple data" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "relative air humidity" ; rdfs:comment "Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "heating system delivery method" ; rdfs:comment "The method by which the heat is delivered through the system" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "air temperature" ; rdfs:comment "Temperature of the air at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "water production rate" ; rdfs:comment "Water production rates per well (e.g. 987 m3 / day)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "surface humidity" ; rdfs:comment "Surfaces: water activity as a function of air and material moisture" ; rdfs:range nmdc:QuantityValue . nmdc:subsurface_depth a rdf:Property ; rdfs:label "Subsurface Depth" ; rdfs:range nmdc:QuantityValue . nmdc:replicate_number a rdf:Property ; rdfs:label "replicate number" ; rdfs:comment "If sending biological replicates, indicate the rep number here." ; rdfs:range xsd:integer . a rdf:Property ; rdfs:label "host wet mass" ; rdfs:comment "Measurement of wet mass" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "ancestral data" ; rdfs:comment "Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "floor condition" ; rdfs:comment "The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; rdfs:range nmdc:DamagedEnum . nmdc:nitrate_nitrogen a rdf:Property ; rdfs:label "nitrate nitrogen" ; rdfs:comment "Concentration of nitrate nitrogen in the sample" ; rdfs:seeAlso ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "water feature size" ; rdfs:comment "The size of the water feature" ; rdfs:range nmdc:QuantityValue . nmdc:nitrite_nitrogen a rdf:Property ; rdfs:label "nitrite nitrogen" ; rdfs:comment "Concentration of nitrite nitrogen in the sample" ; rdfs:seeAlso ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "hydrocarbon resource geological age" ; rdfs:comment "Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:GeolAgeEnum . a rdf:Property ; rdfs:label "average temperature" ; rdfs:comment "The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "door location" ; rdfs:comment "The relative location of the door in the room" ; rdfs:range nmdc:CompassDirections8Enum . a rdf:Property ; rdfs:label "porosity" ; rdfs:comment "Porosity of deposited sediment is volume of voids divided by the total volume of sample" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "door type, wood" ; rdfs:comment "The type of wood door" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "primary treatment" ; rdfs:comment "The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "hydrocarbon resource original temperature" ; rdfs:comment "Original temperature of the hydrocarbon resource" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "source rock depositional environment" ; rdfs:comment "Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:SrDepEnvEnum . a rdf:Property ; rdfs:label "height carpet fiber mat" ; rdfs:comment "The average carpet fiber height in the indoor environment" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "bishomohopanol" ; rdfs:comment "Concentration of bishomohopanol" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "total organic carbon method" ; rdfs:comment "Reference or method used in determining total organic carbon" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "miscellaneous parameter" ; rdfs:comment "Structured miscellaneous property assertions. Use when a value cannot cleanly fit an existing, policy-governed slot." ; rdfs:range nmdc:PropertyAssertion . a rdf:Property ; rdfs:label "methane" ; rdfs:comment "Methane (gas) amount or concentration at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "nitrite" ; rdfs:comment "Concentration of nitrite in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "average daily occupancy" ; rdfs:comment "Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "culture rooting medium" ; rdfs:comment "Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "average seasonal precipitation" ; rdfs:comment "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "pollutants" ; rdfs:comment "Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sulfate in formation water" ; rdfs:comment "Original sulfate concentration in the hydrocarbon resource" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "rainfall regimen" ; rdfs:comment "Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "chemical administration" ; rdfs:comment "List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi" ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "host substrate" ; rdfs:comment "The growth substrate of the host" ; rdfs:range nmdc:TextValue . nmdc:technical_reps a rdf:Property ; rdfs:label "number technical replicate" ; rdfs:comment "If sending technical replicates of the same sample, indicate the replicate count." ; rdfs:range xsd:integer . a rdf:Property ; rdfs:label "total carbon" ; rdfs:comment "Total carbon content" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sulfide" ; rdfs:comment "Concentration of sulfide in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "storage conditions" ; rdfs:comment "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)" ; rdfs:range nmdc:TextValue . nmdc:infiltrations a rdf:Property ; rdfs:label "Infiltrations" ; rdfs:comment "The amount of time it takes to complete each infiltration activity" ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "suspended solids" ; rdfs:comment "Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "ceiling type" ; rdfs:comment "The type of ceiling according to the ceiling's appearance or construction" ; rdfs:range nmdc:CeilTypeEnum . a rdf:Property ; rdfs:label "built structure type" ; rdfs:comment "A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads" ; rdfs:range nmdc:TextValue . nmdc:ammonium_nitrogen a rdf:Property ; rdfs:label "ammonium nitrogen" ; rdfs:comment "Concentration of ammonium nitrogen in the sample" ; rdfs:seeAlso ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "shading device type" ; rdfs:comment "The type of shading device" ; rdfs:range nmdc:ShadingDeviceTypeEnum . a rdf:Property ; rdfs:label "floor count" ; rdfs:comment "The number of floors in the building, including basements and mechanical penthouse" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "shading device condition" ; rdfs:comment "The physical condition of the shading device at the time of sampling" ; rdfs:range nmdc:DamagedRupturedEnum . a rdf:Property ; rdfs:label "adjacent rooms" ; rdfs:comment "List of rooms (room number, room name) immediately adjacent to the sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "additional info" ; rdfs:comment "Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "standing water regimen" ; rdfs:comment "Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "carbon monoxide" ; rdfs:comment "Carbon monoxide (gas) amount or concentration at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "floor signs of water/mold" ; rdfs:comment "Signs of the presence of mold or mildew in a room" ; rdfs:range nmdc:FloorWaterMoldEnum . a rdf:Property ; rdfs:label "door movement" ; rdfs:comment "The type of movement of the door" ; rdfs:range nmdc:DoorMoveEnum . a rdf:Property ; rdfs:label "handidness" ; rdfs:comment "The handidness of the individual sampled" ; rdfs:range nmdc:HandidnessEnum . nmdc:host_strain a rdf:Property ; rdfs:label "Host Strain" ; rdfs:comment "Strain of the host organism that the sample was collected from." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "history/tillage" ; rdfs:comment "Note method(s) used for tilling" ; rdfs:range nmdc:TillageEnum . nmdc:env_package a rdf:Property ; rdfs:label "Environmental Package" ; rdfs:comment "MIxS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "rooting medium pH" ; rdfs:comment "pH measurement of the culture rooting medium; e.g. 5.5" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "rooting medium regulators" ; rdfs:comment "Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "carbon dioxide" ; rdfs:comment "Carbon dioxide (gas) amount or concentration at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sampling floor" ; rdfs:comment "The floor of the building, where the sampling room is located" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "relative sampling location" ; rdfs:comment "The sampling location within the train car" ; rdfs:range nmdc:RelSampLocEnum . a rdf:Property ; rdfs:label "source rock geological age" ; rdfs:comment "Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:GeolAgeEnum . a rdf:Property ; rdfs:label "lithology" ; rdfs:comment "Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:LithologyEnum . nmdc:rna_isolate_meth a rdf:Property ; rdfs:label "RNA isolation method" ; rdfs:comment "Describe the method/protocol/kit used to extract DNA/RNA." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "water content method" ; rdfs:comment "Reference or method used in determining the water content of soil" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "organic matter" ; rdfs:comment "Concentration of organic matter" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "room location in building" ; rdfs:comment "The position of the room within the building" ; rdfs:range nmdc:RoomLocEnum . a rdf:Property ; rdfs:label "total sulfur" ; rdfs:comment "Concentration of total sulfur in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "total inorganic nitrogen" ; rdfs:comment "Total inorganic nitrogen content" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "dissolved hydrogen" ; rdfs:comment "Concentration of dissolved hydrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sample capture status" ; rdfs:comment "Reason for the sample" ; rdfs:range nmdc:SampCaptStatusEnum . a rdf:Property ; rdfs:label "sample true vertical depth subsea" ; rdfs:comment "Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "silicate" ; rdfs:comment "Concentration of silicate" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "fertilizer regimen" ; rdfs:comment "Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "dissolved oxygen in fluids" ; rdfs:comment "Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxygen-corrosion and microbial activity (e.g. Mic)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "floor age" ; rdfs:comment "The time period since installment of the carpet or flooring" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "building occupancy type" ; rdfs:comment "The primary function for which a building or discrete part of a building is intended to be used" ; rdfs:range nmdc:BuildOccupTypeEnum . a rdf:Property ; rdfs:label "presence of pets, animals, or insects" ; rdfs:comment "The type and number of animals or insects present in the sampling space" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "biomass" ; rdfs:comment "Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sieving" ; rdfs:comment "Collection design of pooled samples and/or sieve size and amount of sample sieved" ; rdfs:range nmdc:TextValue . nmdc:emsl_biosample_identifiers a rdf:Property ; rdfs:label "EMSL Biosample Identifiers" ; rdfs:comment "A list of identifiers for the biosample from the EMSL database. This is used to link the biosample, as modeled by NMDC, to the biosample in the planned EMSL NEXUS database." ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:emsl_identifiers , nmdc:biosample_identifiers . a rdf:Property ; rdfs:label "amount of light" ; rdfs:comment "The unit of illuminance and luminous emittance, measuring luminous flux per unit area" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "wall finish material" ; rdfs:comment "The material utilized to finish the outer most layer of the wall" ; rdfs:range nmdc:WallFinishMatEnum . a rdf:Property ; rdfs:label "door type" ; rdfs:comment "The type of door material" ; rdfs:range nmdc:DoorTypeEnum . nmdc:host_name a rdf:Property ; rdfs:label "Host Name" ; rdfs:range xsd:string . nmdc:start_time_inc a rdf:Property ; rdfs:label "incubation start time, GMT" ; rdfs:comment "Time the incubation was started. Only relevant for incubation samples." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "host diet" ; rdfs:comment "Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "surface temperature" ; rdfs:comment "Temperature of the surface at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "salinity" ; rdfs:comment "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "downward PAR" ; rdfs:comment "Visible waveband radiance and irradiance measurements in the water column" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sodium" ; rdfs:comment "Sodium concentration in the sample" ; rdfs:range nmdc:QuantityValue . nmdc:zinc a rdf:Property ; rdfs:label "zinc" ; rdfs:comment "Concentration of zinc in the sample" ; rdfs:seeAlso ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "gravity" ; rdfs:comment "Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "industrial effluent percent" ; rdfs:comment "Percentage of industrial effluents received by wastewater treatment plant" ; rdfs:range nmdc:QuantityValue . nmdc:gold_biosample_identifiers a rdf:Property ; rdfs:label "GOLD Biosample Identifiers" ; rdfs:comment "Unique identifier for a biosample submitted to GOLD that matches the NMDC submitted biosample" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:biosample_identifiers . a rdf:Property ; rdfs:label "chemical treatment" ; rdfs:comment "List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sample storage location" ; rdfs:comment "Location at which sample was stored, usually name of a specific freezer/room" ; rdfs:range nmdc:TextValue . nmdc:sample_link a rdf:Property ; rdfs:label "sample linkage" ; rdfs:comment "A unique identifier to assign parent-child, subsample, or sibling samples. This is relevant when a sample or other material was used to generate the new sample." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "room door distance" ; rdfs:comment "Distance between doors (meters) in the hallway between the sampling room and adjacent rooms" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "current land use" ; rdfs:comment "Present state of sample site" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "humidity regimen" ; rdfs:comment "Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "conductivity" ; rdfs:comment "Electrical conductivity of water" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "bromide" ; rdfs:comment "Concentration of bromide" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host genotype" ; rdfs:comment "Observed genotype" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "non-mineral nutrient regimen" ; rdfs:comment "Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sludge retention time" ; rdfs:comment "The time activated sludge remains in reactor" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "dissolved carbon dioxide" ; rdfs:comment "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "room air exchange rate" ; rdfs:comment "The rate at which outside air replaces indoor air in a given space" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "rooting medium solidifier" ; rdfs:comment "Specification of the solidifying agent in the culture rooting medium" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "hydrocarbon resource type" ; rdfs:comment "Main Hydrocarbon Resource type. The term \"Hydrocarbon Resource\" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:HcrEnum . a rdf:Property ; rdfs:label "organism count" ; rdfs:comment "Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "design, construction, and operation documents" ; rdfs:comment "The building design, construction and operation documents" ; rdfs:range nmdc:BuildDocsEnum . a rdf:Property ; rdfs:label "shading device material" ; rdfs:comment "The material the shading device is composed of" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "window condition" ; rdfs:comment "The physical condition of the window at the time of sampling" ; rdfs:range nmdc:DamagedRupturedEnum . a rdf:Property ; rdfs:label "injection water breakthrough date of specific well" ; rdfs:comment "Injection water breakthrough date per well following a secondary and/or tertiary recovery" ; rdfs:range nmdc:TimestampValue . a rdf:Property ; rdfs:label "host dry mass" ; rdfs:comment "Measurement of dry mass" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "amount or size of sample collected" ; rdfs:comment "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "inside lux light" ; rdfs:comment "The recorded value at sampling time (power density)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "plant sex" ; rdfs:comment "Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite" ; rdfs:range nmdc:PlantSexEnum . a rdf:Property ; rdfs:label "barometric pressure" ; rdfs:comment "Force per unit area exerted against a surface by the weight of air above that surface" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "efficiency percent" ; rdfs:comment "Percentage of volatile solids removed from the anaerobic digestor" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "shading device signs of water/mold" ; rdfs:comment "Signs of the presence of mold or mildew on the shading device" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "season" ; rdfs:comment "The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)" ; rdfs:range nmdc:SeasonEnum . nmdc:host_species a rdf:Property ; rdfs:label "Host Species" ; rdfs:comment "Species of the host organism that the sample was collected from." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "door direction of opening" ; rdfs:comment "The direction the door opens" ; rdfs:range nmdc:DoorDirectEnum . a rdf:Property ; rdfs:label "calcium" ; rdfs:comment "Concentration of calcium in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "aluminum saturation/ extreme unusual properties" ; rdfs:comment "The relative abundance of aluminum in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "mean peak friction velocity" ; rdfs:comment "Measurement of mean peak friction velocity" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "aromatics wt%" ; rdfs:comment "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "tidal stage" ; rdfs:comment "Stage of tide" ; rdfs:range nmdc:TidalStageEnum . a rdf:Property ; rdfs:label "nitrogen" ; rdfs:comment "Concentration of nitrogen (total)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "ventilation rate" ; rdfs:comment "Ventilation rate of the system in the sampled premises" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sampling day weather" ; rdfs:comment "The weather on the sampling day" ; rdfs:range nmdc:SampWeatherEnum . a rdf:Property ; rdfs:label "temperature outside house" ; rdfs:comment "The recorded temperature value at sampling time outside" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "maximum occupancy" ; rdfs:comment "The maximum amount of people allowed in the indoor environment" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "gender of restroom" ; rdfs:comment "The gender type of the restroom" ; rdfs:range nmdc:GenderRestroomEnum . a rdf:Property ; rdfs:label "inorganic particles" ; rdfs:comment "Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "surface moisture pH" ; rdfs:comment "ph measurement of surface" ; rdfs:range xsd:float . a rdf:Property ; rdfs:label "window signs of water/mold" ; rdfs:comment "Signs of the presence of mold or mildew on the window" ; rdfs:range nmdc:MoldVisibilityEnum . a rdf:Property ; rdfs:label "production rate" ; rdfs:comment "Oil and/or gas production rates per well (e.g. 524 m3 / day)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "salinity method" ; rdfs:comment "Reference or method used in determining salinity." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sampling room ID or name" ; rdfs:comment "Sampling room number. This ID should be consistent with the designations on the building floor plans" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sample collection device" ; rdfs:comment "The device used to collect an environmental sample. Recommended values are subclasses of specimen collection device (http://purl.obolibrary.org/obo/OBI_0002814). OBI itself contains only swab/wipe subclasses; environmental sampling devices (corers, grab samplers, passive samplers, etc.) are defined in GENEPIO under the same OBI:0002814 parent. Free-text values are accepted for backward compatibility; new submissions should prefer the form: label [PREFIX:LOCALID]." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "window status" ; rdfs:comment "Defines whether the windows were open or closed during environmental testing" ; rdfs:range nmdc:WindowStatusEnum . a rdf:Property ; rdfs:label "wall location" ; rdfs:comment "The relative location of the wall within the room" ; rdfs:range nmdc:CompassDirections8Enum . a rdf:Property ; rdfs:label "particulate organic carbon" ; rdfs:comment "Concentration of particulate organic carbon" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "links to additional analysis" ; rdfs:comment "Link to additional analysis results performed on the sample" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "room count" ; rdfs:comment "The total count of rooms in the built structure including all room types" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "rooting conditions" ; rdfs:comment "Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sample collection method" ; rdfs:comment "The method employed for collecting the sample" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "gaseous substances" ; rdfs:comment "Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "plant structure" ; rdfs:comment "Name of plant structure the sample was obtained from; for Plant Ontology (PO) terms, see http://obofoundry.org/ontology/po.html, e.g. petiole epidermis (PO:0000051). If an individual flower is sampled, the sex of it can be recorded here." ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "average dew point" ; rdfs:comment "The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day" ; rdfs:range nmdc:QuantityValue . nmdc:start_date_inc a rdf:Property ; rdfs:label "incubation start date" ; rdfs:comment "Date the incubation was started. Only relevant for incubation samples." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:collection_time_inc a rdf:Property ; rdfs:label "incubation collection time, GMT" ; rdfs:comment "Time the incubation was harvested/collected/ended. Only relevant for incubation samples." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "history/crop rotation" ; rdfs:comment "Whether or not crop is rotated, and if yes, rotation schedule" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "ceiling texture" ; rdfs:comment "The feel, appearance, or consistency of a ceiling surface" ; rdfs:range nmdc:CeilingWallTextureEnum . a rdf:Property ; rdfs:label "escalator count" ; rdfs:comment "The number of escalators within the built structure" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "elevator count" ; rdfs:comment "The number of elevators within the built structure" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "door type, composite" ; rdfs:comment "The composite type of the door" ; rdfs:range nmdc:DoorCompTypeEnum . a rdf:Property ; rdfs:label "host color" ; rdfs:comment "The color of host" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "horizon method" ; rdfs:comment "Reference or method used in determining the horizon" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "train stop collection location" ; rdfs:comment "The train stop collection location" ; rdfs:range nmdc:TrainStopLocEnum . a rdf:Property ; rdfs:label "slope aspect" ; rdfs:comment "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration." ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "door area or size" ; rdfs:comment "The size of the door" ; rdfs:range nmdc:QuantityValue . nmdc:collection_time a rdf:Property ; rdfs:label "collection time, GMT" ; rdfs:comment "The time of sampling, either as an instance (single point) or interval." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "window location" ; rdfs:comment "The relative location of the window within the room" ; rdfs:range nmdc:CompassDirections8Enum . a rdf:Property ; rdfs:label "sample material processing" ; rdfs:comment "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed" ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "petroleum hydrocarbon" ; rdfs:comment "Concentration of petroleum hydrocarbon" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "diether lipids" ; rdfs:comment "Concentration of diether lipids; can include multiple types of diether lipids" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "cooling system identifier" ; rdfs:comment "The cooling system identifier" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "dissolved iron" ; rdfs:comment "Concentration of dissolved iron in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "water content" ; rdfs:comment "Water content measurement" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "total nitrogen content method" ; rdfs:comment "Reference or method used in determining the total nitrogen" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "ceiling finish material" ; rdfs:comment "The type of material used to finish a ceiling" ; rdfs:range nmdc:CeilFinishMatEnum . a rdf:Property ; rdfs:label "chlorophyll" ; rdfs:comment "Concentration of chlorophyll" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host body product" ; rdfs:comment "Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. Use terms from the foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON)" ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "ceiling condition" ; rdfs:comment "The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; rdfs:range nmdc:DamagedEnum . a rdf:Property ; rdfs:label "soil_taxonomic/local classification method" ; rdfs:comment "Reference or method used in determining the local soil classification" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "air temperature regimen" ; rdfs:comment "Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "absolute air humidity" ; rdfs:comment "Actual mass of water vapor present in the air water vapor mixture." ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "window horizontal position" ; rdfs:comment "The horizontal position of the window on the wall" ; rdfs:range nmdc:WindowHorizPosEnum . a rdf:Property ; rdfs:label "built structure age" ; rdfs:comment "The age of the built structure since construction" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "orientations of exterior window" ; rdfs:comment "The compass direction the exterior window of the room is facing" ; rdfs:range nmdc:CompassDirections8Enum . a rdf:Property ; rdfs:label "mechanical damage" ; rdfs:comment "Information about any mechanical damage exerted on the plant; can include multiple damages and sites" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "microbial biomass method" ; rdfs:comment "Reference or method used in determining microbial biomass" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "carbon/nitrogen ratio" ; rdfs:comment "Ratio of amount or concentrations of carbon to nitrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "humidity" ; rdfs:comment "Amount of water vapour in the air, at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "plant growth medium" ; rdfs:comment "Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from the Plant Environment Ontology (PECO), plant growth medium exposure (http://purl.obolibrary.org/obo/PECO_0007147), or other controlled vocabulary." ; rdfs:range nmdc:ControlledTermValue . a rdf:Property ; rdfs:label "formation water salinity" ; rdfs:comment "Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "secondary and tertiary recovery methods and start date" ; rdfs:comment "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "number of pets" ; rdfs:comment "The number of pets residing in the sampled space" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "dissolved inorganic nitrogen" ; rdfs:comment "Concentration of dissolved inorganic nitrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "soil horizon" ; rdfs:comment "Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath" ; rdfs:range nmdc:SoilHorizonEnum . a rdf:Property ; rdfs:label "dissolved organic nitrogen" ; rdfs:comment "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "magnesium" ; rdfs:comment "Concentration of magnesium in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "bathroom count" ; rdfs:comment "The number of bathrooms in the building" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "seasonal environment" ; rdfs:comment "Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "antibiotic regimen" ; rdfs:comment "Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "temperature" ; rdfs:comment "Temperature of the sample at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "total nitrogen concentration" ; rdfs:comment "Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "altitude" ; rdfs:comment "Heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "plant product" ; rdfs:comment "Substance produced by the plant, where the sample was obtained from" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "history/previous land use" ; rdfs:comment "Previous land use and dates" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "slope gradient" ; rdfs:comment "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "wind speed" ; rdfs:comment "speed of wind measured at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "room moisture damage or mold history" ; rdfs:comment "The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed" ; rdfs:range xsd:integer . a rdf:Property ; rdfs:label "density" ; rdfs:comment "Density of the sample, which is its mass per unit volume (aka volumetric mass density)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sample disease stage" ; rdfs:comment "Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen" ; rdfs:range nmdc:SampDisStageEnum . a rdf:Property ; rdfs:label "heating delivery locations" ; rdfs:comment "The location of heat delivery within the room" ; rdfs:range nmdc:CompassDirections8Enum . nmdc:project_id a rdf:Property ; rdfs:label "project ID" ; rdfs:comment "Proposal IDs or names associated with dataset" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "organism count qPCR information" ; rdfs:comment "If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "redox potential" ; rdfs:comment "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "biochemical oxygen demand" ; rdfs:comment "Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sample transport conditions" ; rdfs:comment "Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 C)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "exposed ductwork" ; rdfs:comment "The amount of exposed ductwork in the room" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "floor area" ; rdfs:comment "The area of the floor space within the room" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "organic carbon" ; rdfs:comment "Concentration of organic carbon" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "wall height" ; rdfs:comment "The average height of the walls in the sampled room" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "suspended particulate matter" ; rdfs:comment "Concentration of suspended particulate matter" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "wall surface treatment" ; rdfs:comment "The surface treatment of interior wall" ; rdfs:range nmdc:WallSurfTreatmentEnum . a rdf:Property ; rdfs:label "soluble organic material" ; rdfs:comment "Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "wind direction" ; rdfs:comment "Wind direction is the direction from which a wind originates" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "pH" ; rdfs:comment "pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid" ; rdfs:range xsd:float . a rdf:Property ; rdfs:label "total nitrogen content" ; rdfs:comment "Total nitrogen content of the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "rooms connected by a doorway" ; rdfs:comment "List of rooms connected to the sampling room by a doorway" ; rdfs:range nmdc:RoomConnectedEnum . a rdf:Property ; rdfs:label "soil_taxonomic/FAO classification" ; rdfs:comment "Soil classification from the FAO World soil distribution from International Soil Reference and Information Centre (ISRIC). The list of available soil classifications can be found at https://www.isric.org/explore/world-soil-distribution" ; rdfs:range nmdc:FaoClassEnum . a rdf:Property ; rdfs:label "host life stage" ; rdfs:comment "Description of life stage of host" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "rooting medium organic supplements" ; rdfs:comment "Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics, activated charcoal" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "hydrocarbon resource original pressure" ; rdfs:comment "Original pressure of the hydrocarbon resource" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sample collection point" ; rdfs:comment "Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:SampCollectPointEnum . nmdc:soluble_iron_micromol a rdf:Property ; rdfs:label "Soluble Iron (micromol)" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "wall signs of water/mold" ; rdfs:comment "Signs of the presence of mold or mildew on a wall" ; rdfs:range nmdc:MoldVisibilityEnum . a rdf:Property ; rdfs:label "sample subtype" ; rdfs:comment "Name of sample sub-type. For example if \"sample type\" is \"Produced Water\" then subtype could be \"Oil Phase\" or \"Water Phase\". If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:SampSubtypeEnum . a rdf:Property ; rdfs:label "mean annual temperature" ; rdfs:comment "Mean annual temperature" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "drawings" ; rdfs:comment "The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents" ; rdfs:range nmdc:DrawingsEnum . a rdf:Property ; rdfs:label "occupancy at sampling" ; rdfs:comment "Number of occupants present at time of sample within the given space" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "specifications" ; rdfs:comment "The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents" ; rdfs:range nmdc:SpecificEnum . a rdf:Property ; rdfs:label "window open frequency" ; rdfs:comment "The number of times windows are opened per week" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "pesticide regimen" ; rdfs:comment "Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens" ; rdfs:range nmdc:TextValue . nmdc:micro_biomass_c_meth a rdf:Property ; rdfs:label "microbial biomass carbon method" ; rdfs:comment "Reference or method used in determining microbial biomass carbon" ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "floor thermal mass" ; rdfs:comment "The ability of the floor to provide inertia against temperature fluctuations" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "total phosphate" ; rdfs:comment "Total amount or concentration of phosphate" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "radiation regimen" ; rdfs:comment "Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "phaeopigments" ; rdfs:comment "Concentration of phaeopigments; can include multiple phaeopigments" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "aminopeptidase activity" ; rdfs:comment "Measurement of aminopeptidase activity" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "total depth of water column" ; rdfs:comment "Measurement of total depth of water column" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "ventilation type" ; rdfs:comment "Ventilation system used in the sampled premises" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "specific humidity" ; rdfs:comment "The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sample measured depth" ; rdfs:comment "In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "light intensity" ; rdfs:comment "Measurement of light intensity" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "potassium" ; rdfs:comment "Concentration of potassium in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "organic nitrogen" ; rdfs:comment "Concentration of organic nitrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "total dissolved nitrogen" ; rdfs:comment "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "fungicide regimen" ; rdfs:comment "Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "weekday" ; rdfs:comment "The day of the week when sampling occurred" ; rdfs:range nmdc:WeekdayEnum . a rdf:Property ; rdfs:label "rooms that are on the same hallway" ; rdfs:comment "List of room(s) (room number, room name) located in the same hallway as sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "chemical mutagen" ; rdfs:comment "Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "size-fraction lower threshold" ; rdfs:comment "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials smaller than the size threshold are excluded from the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "depth (TVDSS) of hydrocarbon resource pressure" ; rdfs:comment "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "particle classification" ; rdfs:comment "Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "host family relationship" ; rdfs:comment "Familial relationships to other hosts in the same study; can include multiple relationships." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "size fraction selected" ; rdfs:comment "Filtering pore size used in sample preparation" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "total organic carbon" ; rdfs:comment "Total organic carbon content" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "depositional environment" ; rdfs:comment "Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:DeposEnvEnum . a rdf:Property ; rdfs:label "space typical state" ; rdfs:comment "Customary or normal state of the space" ; rdfs:range nmdc:SpaceTypStateEnum . a rdf:Property ; rdfs:label "address" ; rdfs:comment "The street name and building number where the sampling occurred" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sample storage duration" ; rdfs:comment "Duration for which the sample was stored. Indicate the duration for which the sample was stored written in ISO 8601 format" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "vfa in formation water" ; rdfs:comment "Original volatile fatty acid concentration in the hydrocarbon resource" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host phenotype" ; rdfs:comment "Phenotype of human or other host. Use terms from the phenotypic quality ontology (pato) or the Human Phenotype Ontology (HP)" ; rdfs:range nmdc:ControlledTermValue . nmdc:lbc_thirty a rdf:Property ; rdfs:label "lime buffer capacity (at 30 minutes)" ; rdfs:comment "lime buffer capacity, determined after 30 minute incubation" ; rdfs:seeAlso , ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "chloride" ; rdfs:comment "Concentration of chloride in the sample" ; rdfs:range nmdc:QuantityValue . nmdc:insdc_biosample_identifiers a rdf:Property ; rdfs:label "INSDC Biosample Identifiers" ; rdfs:comment "identifiers for corresponding sample in INSDC" ; rdfs:seeAlso , , , ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:biosample_identifiers . a rdf:Property ; rdfs:label "depth" ; rdfs:comment "The vertical distance below local surface. For sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "wall area" ; rdfs:comment "The total area of the sampled room's walls" ; rdfs:range nmdc:QuantityValue . nmdc:igsn_biosample_identifiers a rdf:Property ; rdfs:label "IGSN Biosample Identifiers" ; rdfs:comment "A list of identifiers for the biosample from the IGSN database." ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:igsn_identifiers , nmdc:biosample_identifiers . a rdf:Property ; rdfs:label "environmental medium" ; rdfs:comment "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)" ; rdfs:range nmdc:ControlledIdentifiedTermValue ; rdfs:subPropertyOf nmdc:mixs_env_triad_field . a rdf:Property ; rdfs:label "quadrant position" ; rdfs:comment "The quadrant position of the sampling room within the building" ; rdfs:range nmdc:QuadPosEnum . a rdf:Property ; rdfs:label "particulate organic nitrogen" ; rdfs:comment "Concentration of particulate organic nitrogen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host body site" ; rdfs:comment "Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Use terms from the foundational model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)" ; rdfs:range nmdc:ControlledTermValue . nmdc:isotope_exposure a rdf:Property ; rdfs:label "isotope exposure/addition" ; rdfs:comment "List isotope exposure or addition applied to your sample." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "tissue culture growth media" ; rdfs:comment "Description of plant tissue culture growth media used" ; rdfs:range nmdc:TextValue . nmdc:neon_biosample_identifiers a rdf:Property ; rdfs:label "NEON Biosample Identifiers" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:neon_identifiers , nmdc:biosample_identifiers . nmdc:ncbi_taxonomy_name a rdf:Property ; rdfs:label "NCBI Taxonomy Name" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sample size sorting method" ; rdfs:comment "Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "water temperature regimen" ; rdfs:comment "Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "oxygen" ; rdfs:comment "Oxygen (gas) amount or concentration at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host blood pressure diastolic" ; rdfs:comment "Resting diastolic blood pressure, measured as mm mercury" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "history/previous land use method" ; rdfs:comment "Reference or method used in determining previous land use and dates" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "host length" ; rdfs:comment "The length of subject" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "substructure type" ; rdfs:comment "The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level" ; rdfs:range nmdc:SubstructureTypeEnum . a rdf:Property ; rdfs:label "interior wall condition" ; rdfs:comment "The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas" ; rdfs:range nmdc:DamagedEnum . a rdf:Property ; rdfs:label "API gravity" ; rdfs:comment "API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "typical occupant density" ; rdfs:comment "Customary or normal density of occupants" ; rdfs:range xsd:float . a rdf:Property ; rdfs:label "room dimensions" ; rdfs:comment "The length, width and height of sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "frequency of cooking" ; rdfs:comment "The number of times a meal is cooked per week" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host shape" ; rdfs:comment "Morphological shape of host" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "heating system identifier" ; rdfs:comment "The heating system identifier" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "bedroom count" ; rdfs:comment "The number of bedrooms in the building" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "shading device location" ; rdfs:comment "The location of the shading device in relation to the built structure" ; rdfs:range nmdc:ShadingDeviceLocEnum . nmdc:sample_shipped a rdf:Property ; rdfs:label "sample shipped amount" ; rdfs:comment "The total amount or size (volume, mass, or area) of sample sent to EMSL." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "drainage classification" ; rdfs:comment "Drainage classification from a standard system such as the USDA system" ; rdfs:range nmdc:DrainageClassEnum . a rdf:Property ; rdfs:label "reservoir name" ; rdfs:comment "Name of the reservoir (e.g. Carapebus)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "photon flux" ; rdfs:comment "Measurement of photon flux" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "floor finish material" ; rdfs:comment "The floor covering type; the finished surface that is walked on" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "ethylbenzene" ; rdfs:comment "Concentration of ethylbenzene in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "furniture" ; rdfs:comment "The types of furniture present in the sampled room" ; rdfs:range nmdc:FurnitureEnum . a rdf:Property ; rdfs:label "host total mass" ; rdfs:comment "Total mass of the host at collection, the unit depends on host" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "salt regimen" ; rdfs:comment "Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "nitrate" ; rdfs:comment "Concentration of nitrate in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sampling time outside" ; rdfs:comment "The recent and long term history of outside sampling" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "ceiling area" ; rdfs:comment "The area of the ceiling space within the room" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "dissolved organic carbon" ; rdfs:comment "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "primary production" ; rdfs:comment "Measurement of primary production, generally measured as isotope uptake" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "microbial biomass" ; rdfs:comment "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host disease status" ; rdfs:comment "List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text" ; rdfs:range xsd:string . nmdc:salinity_category a rdf:Property ; rdfs:label "Salinity Category" ; rdfs:comment "Categorical description of the sample's salinity. Examples: halophile, halotolerant, hypersaline, euryhaline" ; rdfs:range xsd:string . nmdc:collected_from a rdf:Property ; rdfs:label "Collected From" ; rdfs:comment "The Site from which a Biosample was collected" ; rdfs:range nmdc:FieldResearchSite . nmdc:sample_collection_site a rdf:Property ; rdfs:label "Sample Collection Site" ; rdfs:comment "Free-text description of the place where the sample was collected: the geographic or environmental site or named location." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "room window count" ; rdfs:comment "Number of windows in the room" ; rdfs:range xsd:integer . a rdf:Property ; rdfs:label "room condition" ; rdfs:comment "The condition of the room at the time of sampling" ; rdfs:range nmdc:RoomCondtEnum . a rdf:Property ; rdfs:label "total acid number" ; rdfs:comment "Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host common name" ; rdfs:comment "Common name of the host" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "phospholipid fatty acid" ; rdfs:comment "Concentration of phospholipid fatty acids; can include multiple values" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "visual media" ; rdfs:comment "The building visual media" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "pH regimen" ; rdfs:comment "Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "filter type" ; rdfs:comment "A device which removes solid particulates or airborne molecular contaminants" ; rdfs:range nmdc:FilterTypeEnum . a rdf:Property ; rdfs:label "climate environment" ; rdfs:comment "Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates" ; rdfs:range nmdc:TextValue . nmdc:microbial_biomass_c a rdf:Property ; rdfs:label "microbial biomass carbon" ; rdfs:comment "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "watering regimen" ; rdfs:comment "Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "room occupancy" ; rdfs:comment "Count of room occupancy at time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "dissolved oxygen" ; rdfs:comment "Concentration of dissolved oxygen" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "mechanical structure" ; rdfs:comment "mechanical structure: a moving structure" ; rdfs:range nmdc:MechStrucEnum . nmdc:experimental_factor_other a rdf:Property ; rdfs:label "experimental factor- other" ; rdfs:comment "Other details about your sample that you feel can't be accurately represented in the available columns." ; rdfs:seeAlso , ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "room sampling position" ; rdfs:comment "The horizontal sampling position in the room relative to architectural elements" ; rdfs:range nmdc:RoomSampPosEnum . a rdf:Property ; rdfs:label "total iron" ; rdfs:comment "Concentration of total iron in the sample" ; rdfs:range nmdc:QuantityValue . nmdc:micro_biomass_n_meth a rdf:Property ; rdfs:label "microbial biomass nitrogen method" ; rdfs:comment "Reference or method used in determining microbial biomass nitrogen" ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:host_genus a rdf:Property ; rdfs:label "Host Genus" ; rdfs:comment "Genus of the host organism that the sample was collected from." ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "oil water contact depth" ; rdfs:comment "Depth of the original oil water contact (OWC) zone (average) (m TVDSS)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "water feature type" ; rdfs:comment "The type of water feature present within the building being sampled" ; rdfs:range nmdc:WaterFeatTypeEnum . a rdf:Property ; rdfs:label "bacterial carbon production" ; rdfs:comment "Measurement of bacterial carbon production" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "window type" ; rdfs:comment "The type of windows" ; rdfs:range nmdc:WindowTypeEnum . a rdf:Property ; rdfs:label "fireplace type" ; rdfs:comment "A firebox with chimney" ; rdfs:range nmdc:FireplaceTypeEnum . a rdf:Property ; rdfs:label "ceiling structure" ; rdfs:comment "The construction format of the ceiling" ; rdfs:range nmdc:CeilStrucEnum . nmdc:bulk_elect_conductivity a rdf:Property ; rdfs:label "bulk electrical conductivity" ; rdfs:comment "Electrical conductivity is a measure of the ability to carry electric current, which is mostly dictated by the chemistry of and amount of water." ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "heavy metals method/ extreme unusual properties" ; rdfs:comment "Reference or method used in determining heavy metals" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "chemical treatment method" ; rdfs:comment "Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days)" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "mean seasonal temperature" ; rdfs:comment "Mean seasonal temperature" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "outside relative humidity" ; rdfs:comment "The recorded outside relative humidity value at the time of sampling" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "window material" ; rdfs:comment "The type of material used to finish a window" ; rdfs:range nmdc:WindowMatEnum . a rdf:Property ; rdfs:label "basin name" ; rdfs:comment "Name of the basin" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "genetic modification" ; rdfs:comment "Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "frequency of cleaning" ; rdfs:comment "The number of times the sample location is cleaned per day." ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "seasonal use" ; rdfs:comment "The seasons the space is occupied" ; rdfs:range nmdc:SeasonUseEnum . a rdf:Property ; rdfs:label "wall thermal mass" ; rdfs:comment "The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host height" ; rdfs:comment "The height of subject" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "number of residents" ; rdfs:comment "The number of individuals currently occupying in the sampling location" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "orientations of exterior wall" ; rdfs:comment "The orientation of the exterior wall" ; rdfs:range nmdc:CompassDirections8Enum . a rdf:Property ; rdfs:label "pour point" ; rdfs:comment "Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high pour point is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (source: https://en.wikipedia.org/wiki/pour_point)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "water current" ; rdfs:comment "Measurement of magnitude and direction of flow within a fluid" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "corrosion rate at sample location" ; rdfs:comment "Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "ceiling thermal mass" ; rdfs:comment "The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host subject id" ; rdfs:comment "A unique identifier by which each subject can be referred to, de-identified" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "history/agrochemical additions" ; rdfs:comment "Addition of fertilizers, pesticides, etc. - amount and time of applications" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "fluorescence" ; rdfs:comment "Raw or converted fluorescence of water" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "rooms that share a wall with sampling room" ; rdfs:comment "List of room(s) (room number, room name) sharing a wall with the sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "door material" ; rdfs:comment "The material the door is composed of" ; rdfs:range nmdc:DoorMatEnum . a rdf:Property ; rdfs:label "volatile organic compounds" ; rdfs:comment "Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "window covering" ; rdfs:comment "The type of window covering" ; rdfs:range nmdc:WindowCoverEnum . a rdf:Property ; rdfs:label "room volume" ; rdfs:comment "Volume of sampling room" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "room net area" ; rdfs:comment "The net floor area of sampling room. Net area excludes wall thicknesses" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sulfate" ; rdfs:comment "Concentration of sulfate in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "source rock kerogen type" ; rdfs:comment "Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If \"other\" is specified, please propose entry in \"additional info\" field" ; rdfs:range nmdc:SrKerogTypeEnum . a rdf:Property ; rdfs:label "gaseous environment" ; rdfs:comment "Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sample type" ; rdfs:comment "The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "indoor surface" ; rdfs:comment "Type of indoor surface" ; rdfs:range nmdc:IndoorSurfEnum . a rdf:Property ; rdfs:label "volatile fatty acids" ; rdfs:comment "Concentration of Volatile Fatty Acids in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "surface-air contaminant" ; rdfs:comment "Contaminant identified on surface" ; rdfs:range nmdc:SurfAirContEnum . a rdf:Property ; rdfs:label "taxonomy ID of DNA sample" ; rdfs:comment "NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or 'blank sample' for negative controls" ; rdfs:range nmdc:ControlledIdentifiedTermValue . a rdf:Property ; rdfs:label "turbidity" ; rdfs:comment "Measure of the amount of cloudiness or haziness in water caused by individual particles" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "host growth conditions" ; rdfs:comment "Literature reference giving growth conditions of the host" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sediment type" ; rdfs:comment "Information about the sediment type based on major constituents" ; rdfs:range nmdc:SedimentTypeEnum . a rdf:Property ; rdfs:label "soluble inorganic material" ; rdfs:comment "Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "architectural structure" ; rdfs:comment "An architectural structure is a human-made, free-standing, immobile outdoor construction" ; rdfs:range nmdc:ArchStrucEnum . a rdf:Property ; rdfs:label "bacterial respiration" ; rdfs:comment "Measurement of bacterial respiration in the water column" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "exposed pipes" ; rdfs:comment "The number of exposed pipes in the room" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "viscosity" ; rdfs:comment "A measure of oil's resistance to gradual deformation by shear stress or tensile stress (e.g. 3.5 cp; 100 °C)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "chemical oxygen demand" ; rdfs:comment "A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite" ; rdfs:range nmdc:QuantityValue . nmdc:non_microb_biomass_method a rdf:Property ; rdfs:label "non-microbial biomass method" ; rdfs:comment "Reference or method used in determining biomass" ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "injection water fraction" ; rdfs:comment "Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "mineral nutrient regimen" ; rdfs:comment "Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "air particulate matter concentration" ; rdfs:comment "Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM" ; rdfs:range xsd:string . nmdc:badges a rdf:Property ; rdfs:label "Metadata Quality Badges" ; rdfs:comment "Metadata-quality badges awarded to this record. Each value names one badge, which is present or absent; there are no levels or tiers. Most badges name a completeness subset, but not all do: expert_curation is awarded from provenance instead. Awarded by a downstream service, not asserted by submitters. Awarding is additive: a badge, once awarded, is not removed from the record." ; rdfs:seeAlso ; rdfs:range nmdc:MetadataBadgeEnum . a rdf:Property ; rdfs:label "indoor space" ; rdfs:comment "A distinguishable space within a structure, the purpose for which discrete areas of a building is used" ; rdfs:range nmdc:IndoorSpaceEnum . a rdf:Property ; rdfs:label "observed host symbionts" ; rdfs:comment "The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont can have its own symbionts. For example, parasites may have hyperparasites (=parasites of the parasite)" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "occupant density at sampling" ; rdfs:comment "Average number of occupants at time of sampling per square footage" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "rooting medium micronutrients" ; rdfs:comment "Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo)" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "total phosphorus" ; rdfs:comment "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "permeability" ; rdfs:comment "Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "total particulate carbon" ; rdfs:comment "Total particulate carbon content" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "perturbation" ; rdfs:comment "Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "last time swept/mopped/vacuumed" ; rdfs:comment "The last time the floor was cleaned (swept, mopped, vacuumed)" ; rdfs:range nmdc:TimestampValue . a rdf:Property ; rdfs:label "saturates wt%" ; rdfs:comment "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)" ; rdfs:range nmdc:TextValue . nmdc:manganese a rdf:Property ; rdfs:label "manganese" ; rdfs:comment "Concentration of manganese in the sample" ; rdfs:seeAlso ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "toluene" ; rdfs:comment "Concentration of toluene in the sample" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "sample well name" ; rdfs:comment "Name of the well (e.g. BXA1123) where sample was taken" ; rdfs:range nmdc:TextValue . nmdc:MassSpectrometryConfiguration a rdfs:Class ; rdfs:comment "A set of parameters that define and control the actions of a mass spectrometry process." ; rdfs:subClassOf nmdc:Configuration . nmdc:resolution_categories a rdf:Property ; rdfs:comment "The relative resolution at which spectra were collected." ; rdfs:range nmdc:ResolutionCategoryEnum . nmdc:mass_spectrometry_acquisition_strategy a rdf:Property ; rdfs:comment "Mode of running a mass spectrometer method by which m/z ranges are selected and ions possibly fragment." ; rdfs:range nmdc:MassSpectrometryAcquisitionStrategyEnum . nmdc:ionization_source a rdf:Property ; rdfs:comment "The ionization source used to introduce processed samples into a mass spectrometer" ; rdfs:range nmdc:IonizationSourceEnum . nmdc:mass_spectrum_collection_modes a rdf:Property ; rdfs:comment "Indicates whether mass spectra were collected in full profile, reduced profile, or centroid mode during acquisition." ; rdfs:range nmdc:MassSpectrumCollectionModeEnum . nmdc:mass_analyzers a rdf:Property ; rdfs:comment "The kind of mass analyzer(s) used during the spectra collection." ; rdfs:range nmdc:MassAnalyzerEnum . nmdc:polarity_mode a rdf:Property ; rdfs:comment "the polarity of which ions are generated and detected" ; rdfs:range nmdc:PolarityModeEnum . nmdc:Configuration a rdfs:Class ; rdfs:comment "A set of parameters that define the actions of a process and is shared among multiple instances of the process." ; rdfs:subClassOf nmdc:InformationObject . nmdc:MixingProcess a rdfs:Class ; rdfs:comment """The combining of components, particles or layers into a more homogeneous state. """ ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:Database a rdfs:Class ; rdfs:comment "An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest. For MongoDB, the lists of objects that Database slots point to correspond to **collections**." . nmdc:calibration_set a rdf:Property ; rdfs:comment "This property links a database object to the set of calibrations within it." ; rdfs:range nmdc:CalibrationInformation ; rdfs:subPropertyOf nmdc:object_set . nmdc:genome_feature_set a rdf:Property ; rdfs:comment "This property links a database object to the set of all features" ; rdfs:range nmdc:GenomeFeature ; rdfs:subPropertyOf nmdc:object_set . nmdc:study_set a rdf:Property ; rdfs:comment "This property links a database object to the set of studies within it." ; rdfs:range nmdc:Study ; rdfs:subPropertyOf nmdc:object_set . nmdc:data_object_set a rdf:Property ; rdfs:comment "This property links a database object to the set of data objects within it." ; rdfs:range nmdc:DataObject ; rdfs:subPropertyOf nmdc:object_set . nmdc:manifest_set a rdf:Property ; rdfs:comment "This property links a database object to the set of manifests within it." ; rdfs:range nmdc:Manifest ; rdfs:subPropertyOf nmdc:object_set . nmdc:organism_set a rdf:Property ; rdfs:comment "This property links a database object to the set of organisms within it." ; rdfs:range nmdc:Organism ; rdfs:subPropertyOf nmdc:object_set . nmdc:instrument_set a rdf:Property ; rdfs:comment "This property links a database object to the set of instruments within it." ; rdfs:range nmdc:Instrument ; rdfs:subPropertyOf nmdc:object_set . nmdc:functional_annotation_set a rdf:Property ; rdfs:comment "This property links a database object to the set of all functional annotations" ; rdfs:range nmdc:FunctionalAnnotation ; rdfs:subPropertyOf nmdc:object_set . nmdc:workflow_execution_set a rdf:Property ; rdfs:comment "This property links a database object to the set of workflow executions." ; rdfs:range nmdc:WorkflowExecution ; rdfs:subPropertyOf nmdc:object_set . nmdc:material_processing_set a rdf:Property ; rdfs:comment "This property links a database object to the set of material processing within it." ; rdfs:range nmdc:MaterialProcessing ; rdfs:subPropertyOf nmdc:object_set . nmdc:data_generation_set a rdf:Property ; rdfs:comment "This property links a database object to the set of data generations within it." ; rdfs:range nmdc:DataGeneration ; rdfs:subPropertyOf nmdc:object_set . nmdc:biosample_set a rdf:Property ; rdfs:comment "This property links a database object to the set of samples within it." ; rdfs:range nmdc:Biosample ; rdfs:subPropertyOf nmdc:object_set . nmdc:organism_sample_set a rdf:Property ; rdfs:comment "This property links a database object to the set of organism samples within it." ; rdfs:range nmdc:OrganismSample ; rdfs:subPropertyOf nmdc:object_set . nmdc:functional_annotation_agg a rdf:Property ; rdfs:comment "This property links a database object to a set of functional annotation aggregation (agg) results." ; rdfs:range nmdc:FunctionalAnnotationAggMember . nmdc:storage_process_set a rdf:Property ; rdfs:comment "This property links a database object to the set of storage processes within it." ; rdfs:range nmdc:StorageProcess ; rdfs:subPropertyOf nmdc:object_set . nmdc:processed_sample_set a rdf:Property ; rdfs:comment "This property links a database object to the set of processed samples within it." ; rdfs:range nmdc:ProcessedSample ; rdfs:subPropertyOf nmdc:object_set . nmdc:configuration_set a rdf:Property ; rdfs:comment "This property links a database object to the set of configurations within it." ; rdfs:range nmdc:Configuration ; rdfs:subPropertyOf nmdc:object_set . nmdc:collecting_biosamples_from_site_set a rdf:Property ; rdfs:range nmdc:CollectingBiosamplesFromSite ; rdfs:subPropertyOf nmdc:object_set . nmdc:field_research_site_set a rdf:Property ; rdfs:range nmdc:FieldResearchSite ; rdfs:subPropertyOf nmdc:object_set . nmdc:MaterialEntity a rdfs:Class ; rdfs:label "Material Entity" ; rdfs:comment "A named thing that occupies space and has mass." ; rdfs:subClassOf nmdc:NamedThing . nmdc:MaterialProcessing a rdfs:Class ; rdfs:comment "A process that takes one or more samples as inputs and generates one or more samples as outputs." ; rdfs:subClassOf . nmdc:Extraction a rdfs:Class ; rdfs:comment "A material separation in which a desired component of an input material is separated from the remainder." ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:input_mass a rdf:Property ; rdfs:label "sample mass used" ; rdfs:comment "Total mass of sample used in activity." ; rdfs:range nmdc:QuantityValue . nmdc:extraction_targets a rdf:Property ; rdfs:comment "Provides the target biomolecule that has been separated from a sample during an extraction process." ; rdfs:range nmdc:ExtractionTargetEnum . nmdc:DataEmitterProcess a rdfs:Class ; rdfs:comment "A process that generates data objects as output." ; rdfs:subClassOf . nmdc:TextValue a rdfs:Class ; rdfs:comment "A basic string value" ; rdfs:subClassOf nmdc:AttributeValue . nmdc:language a rdf:Property ; rdfs:comment "Should use ISO 639-1 code e.g. \"en\", \"fr\"" ; rdfs:range xsd:language . nmdc:NucleotideSequencing a rdfs:Class ; rdfs:comment "A DataGeneration in which the sequence of DNA or RNA molecules is generated." ; rdfs:subClassOf nmdc:DataGeneration . nmdc:gold_sequencing_project_identifiers a rdf:Property ; rdfs:comment "identifiers for corresponding sequencing project in GOLD" ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:gold_identifiers , nmdc:omics_processing_identifiers . nmdc:ncbi_project_name a rdf:Property ; rdfs:range xsd:string . nmdc:insdc_experiment_identifiers a rdf:Property ; rdfs:comment "INSDC identifiers for the unique sequencing result for a specific sample" ; rdfs:seeAlso ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:external_database_identifiers . nmdc:FunctionalAnnotationAggMember a rdfs:Class ; rdfs:comment "This class is used to store aggregated results from workflows which produce functional annotations such as metaproteomics and metagenomics." . nmdc:gene_function_id a rdf:Property ; rdfs:comment "The identifier for the gene function." ; rdfs:range xsd:anyURI . nmdc:count a rdf:Property ; rdfs:comment "The number of sequences (for a metagenome or metatranscriptome) or spectra (for metaproteomics) associated with the specified function." ; rdfs:range xsd:integer . nmdc:Person a rdfs:Class ; rdfs:comment "A person, typically a researcher associated with a study or data generation." ; rdfs:subClassOf nmdc:Agent . nmdc:orcid a rdf:Property ; rdfs:comment "The ORCID of a person." ; rdfs:seeAlso ; rdfs:range xsd:string . a rdf:Property ; rdfs:comment "An email address for an entity such as a person. This should be the primary email address used." ; rdfs:range xsd:string . nmdc:profile_image_url a rdf:Property ; rdfs:comment "A url that points to an image of this person or organization." ; rdfs:range xsd:string . nmdc:CollectingBiosamplesFromSite a rdfs:Class ; rdfs:label "Collecting Biosamples From Site" ; rdfs:subClassOf . nmdc:MagBin a rdfs:Class . nmdc:num_23_s a rdf:Property ; rdfs:comment "Number of 23S sequences detected, a subunit of ribosomes." ; rdfs:range xsd:integer . nmdc:gtdbtk_species a rdf:Property ; rdfs:comment "Taxonomic genus assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:gtdbtk_order a rdf:Property ; rdfs:comment "Taxonomic order assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:members_id a rdf:Property ; rdfs:comment "Names of the contigs that make up a metagenome-assembled genome." ; rdfs:range xsd:string . nmdc:gtdbtk_family a rdf:Property ; rdfs:comment "Taxonomic family assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:total_bases a rdf:Property ; rdfs:comment "Total number of basepairs." ; rdfs:range xsd:integer . nmdc:num_16_s a rdf:Property ; rdfs:comment "Number of 16S sequences detected, a subunit of prokaryotic ribosomes." ; rdfs:range xsd:integer . nmdc:bin_quality a rdf:Property ; rdfs:comment "The quality of the metagenome-assembled genome based on MIMAG standards (https://doi.org/10.1038/nbt.3893)." ; rdfs:range nmdc:BinQualityEnum . nmdc:bin_name a rdf:Property ; rdfs:comment "Name of the metagenome-assembled genome." ; rdfs:range xsd:string . nmdc:gtdbtk_domain a rdf:Property ; rdfs:comment "Taxonomic domain assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:gtdbtk_genus a rdf:Property ; rdfs:comment "Taxonomic genus assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:gene_count a rdf:Property ; rdfs:comment "Number of genes." ; rdfs:range xsd:integer . nmdc:gtdbtk_class a rdf:Property ; rdfs:comment "Taxonomic class assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:number_of_contig a rdf:Property ; rdfs:comment "Number of contigs" ; rdfs:range xsd:integer . nmdc:gtdbtk_phylum a rdf:Property ; rdfs:comment "Taxonomic phylum assigned by GTDB-Tk." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:num_5_s a rdf:Property ; rdfs:comment "Number of 5S sequences detected, a subunit of ribosomes." ; rdfs:range xsd:integer . nmdc:eukaryotic_evaluation a rdf:Property ; rdfs:comment "Contains results from evaluating if a Metagenome-Assembled Genome is of eukaryotic lineage." ; rdfs:range nmdc:EukEval . nmdc:num_t_rna a rdf:Property ; rdfs:comment "Number of transfer RNAs." ; rdfs:range xsd:integer . nmdc:FunctionalAnnotationTerm a rdfs:Class ; rdfs:comment "Abstract grouping class for any term/descriptor that can be applied to a functional unit of a genome (protein, ncRNA, complex)." ; rdfs:subClassOf nmdc:OntologyClass . nmdc:Manifest a rdfs:Class ; rdfs:comment "A qualified collection of DataObjects that can be analyzed together in the same experimental context." ; rdfs:subClassOf nmdc:InformationObject . nmdc:manifest_category a rdf:Property ; rdfs:comment "The type of context in which the constituent DataObjects can be analyzed together." ; rdfs:range nmdc:ManifestCategoryEnum . nmdc:Agent a rdfs:Class ; rdfs:comment "A person or organization bears some form of responsibility for an activity taking place, for the existence of an entity, or for another agent's activity." . nmdc:MetagenomeAssembly a rdfs:Class ; rdfs:comment "A workflow execution activity that converts sequencing reads into an assembled metagenome." ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:Isolation a rdfs:Class ; rdfs:comment "A material processing that separates an organism from a mixed sample by selection techniques such as serial dilution, plating on selective media, and colony picking." ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:MobilePhaseSegment a rdfs:Class ; rdfs:comment "A fluid mixture of substances that flow though a chromatographic stationary phase." . nmdc:LibraryPreparation a rdfs:Class ; rdfs:subClassOf nmdc:MaterialProcessing . a rdf:Property ; rdfs:label "library layout" ; rdfs:comment "Specify whether to expect single, paired, or other configuration of reads" ; rdfs:range nmdc:LibLayoutEnum . nmdc:library_type a rdf:Property ; rdfs:label "library type" ; rdfs:range nmdc:LibraryTypeEnum . a rdf:Property ; rdfs:label "adapters" ; rdfs:comment "Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "target gene" ; rdfs:comment "Targeted gene or locus name for marker gene studies" ; rdfs:range nmdc:TargetGeneOrLocusEnum . nmdc:library_source a rdf:Property ; rdfs:comment "The molecular source of the sequencing library" ; rdfs:seeAlso ; rdfs:range nmdc:LibrarySourceEnum . nmdc:is_stranded a rdf:Property ; rdfs:comment "Is the (RNA) library stranded or non-stranded (unstranded)." ; rdfs:range xsd:boolean . nmdc:pcr_cycles a rdf:Property ; rdfs:range xsd:integer . nmdc:library_preparation_kit a rdf:Property ; rdfs:range xsd:string . nmdc:library_selection a rdf:Property ; rdfs:comment "Library selection or enrichment method used" ; rdfs:seeAlso ; rdfs:range nmdc:LibrarySelectionEnum . a rdf:Property ; rdfs:label "pcr primers" ; rdfs:comment "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "target subfragment" ; rdfs:comment "Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA" ; rdfs:range nmdc:TextValue . nmdc:library_strategy a rdf:Property ; rdfs:comment "Sequencing technique intended for this library" ; rdfs:seeAlso ; rdfs:range nmdc:LibraryStrategyEnum . a rdf:Property ; rdfs:label "nucleic acid amplification" ; rdfs:comment "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids" ; rdfs:range nmdc:TextValue . nmdc:stranded_orientation a rdf:Property ; rdfs:comment "Lists the strand orientiation for a stranded RNA library preparation." ; rdfs:range nmdc:StrandedOrientationEnum . a rdf:Property ; rdfs:label "pcr conditions" ; rdfs:comment "Description of reaction conditions and components of polymerase chain reaction performed during library preparation" ; rdfs:range xsd:string . nmdc:DataObject a rdfs:Class ; rdfs:comment "An object that primarily consists of symbols that represent information. Files, records, and omics data are examples of data objects." ; rdfs:subClassOf nmdc:InformationObject . nmdc:in_manifest a rdf:Property ; rdfs:comment "one or more combinations of other DataObjects that can be analyzed together" ; rdfs:range nmdc:Manifest . nmdc:file_size_bytes a rdf:Property ; rdfs:comment "Size of the file in bytes" ; rdfs:range xsd:long . nmdc:insdc_run_identifiers a rdf:Property ; rdfs:comment "Identifiers for the manifest of data file(s) that are derived from sequencing a library described by the associated INSDC experiment." ; rdfs:seeAlso ; rdfs:range xsd:anyURI ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:external_database_identifiers . nmdc:data_object_type a rdf:Property ; rdfs:comment "The type of file represented by the data object." ; rdfs:range nmdc:FileTypeEnum . nmdc:compression_type a rdf:Property ; rdfs:comment "If provided, specifies the compression type" ; rdfs:range xsd:string . nmdc:md_5_checksum a rdf:Property ; rdfs:comment "MD5 checksum of file (pre-compressed)" ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:data_category a rdf:Property ; rdfs:comment "The category of the file, such as instrument data from data generation or processed data from a workflow execution." ; rdfs:range nmdc:DataCategoryEnum . nmdc:TimestampValue a rdfs:Class ; rdfs:comment "A value that is a timestamp. The range should be ISO-8601" ; rdfs:subClassOf nmdc:AttributeValue . nmdc:ChromatographicSeparationProcess a rdfs:Class ; rdfs:comment "The process of using a selective partitioning of the analyte or interferent between two immiscible phases." ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:GenomeFeature a rdfs:Class ; rdfs:comment "A feature localized to an interval along a genome" ; rdfs:seeAlso . nmdc:phase a rdf:Property ; rdfs:comment "The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2." ; rdfs:range xsd:integer . nmdc:feature_type a rdf:Property ; rdfs:comment "TODO: Yuri to write" ; rdfs:range xsd:string . nmdc:end a rdf:Property ; rdfs:comment "The end of the feature in positive 1-based integer coordinates" ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:gff_coordinate . nmdc:encodes a rdf:Property ; rdfs:comment "The gene product encoded by this feature. Typically this is used for a CDS feature or gene feature which will encode a protein. It can also be used by a nc transcript ot gene feature that encoded a ncRNA" ; rdfs:range nmdc:GeneProduct . nmdc:seqid a rdf:Property ; rdfs:comment "The ID of the landmark used to establish the coordinate system for the current feature." ; rdfs:range xsd:string . nmdc:strand a rdf:Property ; rdfs:comment "The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand)." ; rdfs:range xsd:string . nmdc:start a rdf:Property ; rdfs:comment "The start of the feature in positive 1-based integer coordinates" ; rdfs:range xsd:integer ; rdfs:subPropertyOf nmdc:gff_coordinate . nmdc:MetagenomeAnnotation a rdfs:Class ; rdfs:comment "A workflow execution activity that provides functional and structural annotation of assembled metagenome contigs" ; rdfs:subClassOf nmdc:AnnotatingWorkflow . nmdc:MetatranscriptomeExpressionAnalysis a rdfs:Class ; rdfs:comment "A workflow process that provides expression values and read counts for gene features predicted on the contigs." ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:FailureCategorization a rdfs:Class . nmdc:qc_failure_what a rdf:Property ; rdfs:comment "Provides a summary about what caused a lab or workflow process to fail" ; rdfs:range nmdc:FailureWhatEnum . nmdc:qc_failure_where a rdf:Property ; rdfs:comment "Describes the nmdc schema class that corresonds to where the failure occurred. Most commonly this would be the same as Class that generated the results." ; rdfs:range nmdc:FailureWhereEnum . nmdc:SubSamplingProcess a rdfs:Class ; rdfs:comment """Separating a sample aliquot from the starting material for downstream activity. """ ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:contained_in a rdf:Property ; rdfs:comment "A type of container." ; rdfs:range nmdc:ContainerCategoryEnum . nmdc:Site a rdfs:Class ; rdfs:label "Site" ; rdfs:subClassOf nmdc:MaterialEntity . nmdc:Organization a rdfs:Class ; rdfs:comment "A social or legal institution such as a company, society, consortium, etc." ; rdfs:subClassOf nmdc:Agent . nmdc:ror a rdf:Property ; rdfs:comment "The Research Organization Registry identifier of an organization." ; rdfs:seeAlso , ; rdfs:range xsd:string . nmdc:Protocol a rdfs:Class . nmdc:protocol_for a rdf:Property ; rdfs:comment "The type of planned process that the protocol describes." ; rdfs:range nmdc:ProtocolForEnum . nmdc:OrthologyGroup a rdfs:Class ; rdfs:comment "A set of genes or gene products in which all members are orthologous" ; rdfs:subClassOf nmdc:FunctionalAnnotationTerm . nmdc:PropertyAssertion a rdfs:Class ; rdfs:comment "A structured record of data that doesn't fit nicely within the constraints of other NMDC AttributeValues. Uses primitive ranges only." ; rdfs:subClassOf nmdc:AttributeValue . nmdc:has_value_term_id a rdf:Property ; rdfs:comment "CURIE or IRI for categorical values (ENVO, PATO, METPO, etc.)." ; rdfs:range xsd:anyURI . nmdc:has_boolean_value a rdf:Property ; rdfs:comment "Links a quantity value to a boolean" ; rdfs:range xsd:boolean . nmdc:has_datetime_value a rdf:Property ; rdfs:comment "Date-time value for the property in ISO-8601 format." ; rdfs:range xsd:string . nmdc:has_attribute_label a rdf:Property ; rdfs:comment "Human-readable label for the property, taken from its MIxS slot, NMDC slot, or ontology term (ENVO, OBI, etc.) label." ; rdfs:range xsd:string . nmdc:has_quantity_kind_id a rdf:Property ; rdfs:comment "Optional CURIE or IRI for the physical quantity kind, which is a qudt:QuantityKind." ; rdfs:range xsd:anyURI . nmdc:has_attribute_id a rdf:Property ; rdfs:comment "CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term, etc.)." ; rdfs:range xsd:anyURI . nmdc:NomAnalysis a rdfs:Class ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:CalibrationInformation a rdfs:Class ; rdfs:comment "A calibration object that is associated with a process." ; rdfs:subClassOf nmdc:InformationObject . nmdc:calibration_target a rdf:Property ; rdfs:comment "the target measurement of the calibration" ; rdfs:range nmdc:CalibrationTargetEnum . nmdc:calibration_standard a rdf:Property ; rdfs:comment "the reference standard(s) used for calibration" ; rdfs:range nmdc:CalibrationStandardEnum . nmdc:calibration_object a rdf:Property ; rdfs:comment "the file containing the calibration data object" ; rdfs:range nmdc:DataObject . nmdc:internal_calibration a rdf:Property ; rdfs:comment "whether internal calibration was used, if false, external calibration was used" ; rdfs:range xsd:boolean . nmdc:MagsAnalysis a rdfs:Class ; rdfs:label "Metagenome-Assembled Genome analysis activity" ; rdfs:comment "A workflow execution activity that uses computational binning tools to group assembled contigs into genomes" ; rdfs:subClassOf nmdc:WorkflowExecution . nmdc:low_depth_contig_num a rdf:Property ; rdfs:comment "Number of contigs which were excluded from binning for depth of coverage." ; rdfs:range xsd:integer . nmdc:input_contig_num a rdf:Property ; rdfs:comment "Total number of input contigs." ; rdfs:range xsd:integer . nmdc:mags_list a rdf:Property ; rdfs:comment "Contains detailed information about each metagenome-assembled genome." ; rdfs:range nmdc:MagBin . nmdc:binned_contig_num a rdf:Property ; rdfs:comment "Number of contigs that ended up in a medium or high quality bin." ; rdfs:range xsd:integer . nmdc:too_short_contig_num a rdf:Property ; rdfs:comment "Number of contigs which were excluded from binning for length." ; rdfs:range xsd:integer . nmdc:unbinned_contig_num a rdf:Property ; rdfs:comment "Number of contigs which did not end up in a medium or high quality bin." ; rdfs:range xsd:integer . nmdc:NcbiTaxon a rdfs:Class ; rdfs:comment "A taxonomy term from NCBI Taxonomy. NcbiTaxon instances are identified by NCBITaxon CURIEs (e.g. NCBITaxon:511145) and stored in ontology_class_set alongside other OntologyClass instances. No NMDC-minted identifiers are assigned. Support for additional taxonomic authorities (GTDB, LPSN, SeqCode) would be represented by separate classes or by widening this class's id_prefixes in a follow-on PR." ; rdfs:subClassOf nmdc:OntologyClass . nmdc:StorageProcess a rdfs:Class ; rdfs:comment "A planned process with the objective to preserve and protect material entities by placing them in an identified location which may have a controlled environment." ; rdfs:subClassOf . nmdc:Culturing a rdfs:Class ; rdfs:comment "A material processing that grows an organism under controlled conditions. The input and output are both organism samples; the output is an expanded or maintained culture of the input organism." ; rdfs:subClassOf nmdc:MaterialProcessing . nmdc:Instrument a rdfs:Class ; rdfs:comment "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. This class models the make and model of the instrument, not the specific instance of the instrument." ; rdfs:subClassOf nmdc:MaterialEntity . nmdc:model a rdf:Property ; rdfs:range nmdc:InstrumentModelEnum . nmdc:vendor a rdf:Property ; rdfs:range nmdc:InstrumentVendorEnum . nmdc:AnnotatingWorkflow a rdfs:Class ; rdfs:comment "A WorkflowExecution whose output indicates the potential functions of genes or gene products" ; rdfs:subClassOf nmdc:WorkflowExecution . a rdfs:Class ; rdfs:comment "This class supports binding an agent (a Person or an Organization) to a study or a data generation record with a CRediT Contributor Role." ; rdfs:seeAlso , . nmdc:applies_to_agent a rdf:Property ; rdfs:range nmdc:Agent . nmdc:applied_roles a rdf:Property ; rdfs:range nmdc:CreditEnum . nmdc:ControlledTermValue a rdfs:Class ; rdfs:comment "A controlled term or class from an ontology" ; rdfs:subClassOf nmdc:AttributeValue . nmdc:ProvenanceMetadata a rdfs:Class ; rdfs:comment "Metadata pertaining to how a record was created." . nmdc:submission_portal_identifier a rdf:Property ; rdfs:comment "The UUID of the NMDC Submission Portal entry that generated this record." ; rdfs:seeAlso ; rdfs:range xsd:string . nmdc:source_system_of_record a rdf:Property ; rdfs:comment "Identifies the system of origin for a record" ; rdfs:range nmdc:SourceSystemEnum . nmdc:mod_date a rdf:Property ; rdfs:comment "The date and time at which a record was last modified in the NMDC database." ; rdfs:range xsd:dateTime . nmdc:add_date a rdf:Property ; rdfs:comment "The date and time at which a record was added to the NMDC database." ; rdfs:range xsd:dateTime . a rdf:Property ; rdfs:label "isolation and growth condition" ; rdfs:comment "Publication reference in the form of pubmed ID (pmid), digital object identifier (doi) or url for isolation and growth condition specifications of the organism/material" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "nucleic acid extraction" ; rdfs:comment "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sequencing method" ; rdfs:comment "Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)" ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "sequence quality check" ; rdfs:comment "Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA" ; rdfs:range nmdc:SeqQualityCheckEnum . a rdf:Property ; rdfs:label "chimera check software" ; rdfs:comment "Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences" ; rdfs:range nmdc:TextValue . a rdf:Property ; rdfs:label "sample volume or weight for DNA extraction" ; rdfs:comment "Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)" ; rdfs:range nmdc:QuantityValue . a rdf:Property ; rdfs:label "pooling of DNA extracts (if done)" ; rdfs:comment "Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given" ; rdfs:range xsd:string . nmdc:analysis_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:assembly_identifiers a rdf:Property ; rdfs:range xsd:string . nmdc:biogas_retention_time a rdf:Property ; rdfs:range xsd:string . nmdc:biogas_temperature a rdf:Property ; rdfs:range xsd:string . nmdc:biosample_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:chemical_formula a rdf:Property ; rdfs:comment "A generic grouping for molecular formulae and empirical formulae" ; rdfs:range xsd:string . nmdc:completion_date a rdf:Property ; rdfs:range xsd:string . nmdc:concentration a rdf:Property ; rdfs:comment "The concentration of a substance used in a process" ; rdfs:range nmdc:QuantityValue . nmdc:date_created a rdf:Property ; rdfs:comment "from database class" ; rdfs:range xsd:string . nmdc:dna_absorb_2 a rdf:Property ; rdfs:label "DNA absorbance 260/230" ; rdfs:comment "260/230 measurement of DNA sample purity" ; rdfs:range xsd:float ; rdfs:subPropertyOf nmdc:biomaterial_purity . nmdc:dna_lr_isolate_meth a rdf:Property ; rdfs:label "DNA isolation method for long read sequencing" ; rdfs:comment "Describe the method/protocol/kit used to extract DNA/RNA for long read sequencing." ; rdfs:range xsd:string . nmdc:emsl_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:emsl_store_temp a rdf:Property ; rdfs:label "EMSL sample storage temperature, deg. C" ; rdfs:comment "The temperature at which the sample should be stored upon delivery to EMSL" ; rdfs:range xsd:float . nmdc:etl_software_version a rdf:Property ; rdfs:comment "from database class" ; rdfs:range xsd:string . nmdc:gff_coordinate a rdf:Property ; rdfs:comment "A positive 1-based integer coordinate indicating start or end" ; rdfs:range xsd:integer . nmdc:gnps_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:gold_identifiers a rdf:Property ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:gold_path_field a rdf:Property ; rdfs:comment "This is a grouping for any of the gold path fields" ; rdfs:range xsd:string . nmdc:igsn_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:input_volume a rdf:Property ; rdfs:comment "The volume of the input sample." ; rdfs:range nmdc:QuantityValue . nmdc:insdc_analysis_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:analysis_identifiers . nmdc:insdc_identifiers a rdf:Property ; rdfs:comment "Any identifier covered by the International Nucleotide Sequence Database Collaboration" ; rdfs:seeAlso , ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:insdc_secondary_sample_identifiers a rdf:Property ; rdfs:comment "secondary identifiers for corresponding sample in INSDC" ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:biosample_identifiers . nmdc:insdc_sra_ena_study_identifiers a rdf:Property ; rdfs:comment "identifiers for corresponding project in INSDC SRA / ENA" ; rdfs:seeAlso , ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:insdc_identifiers , nmdc:study_identifiers . nmdc:jgi_metagenomics a rdf:Property ; rdfs:comment "Group of terms that appear in the 'JGI-Metagenomics' section of the NMDC sample metadata submission portal" ; rdfs:range xsd:string . nmdc:jgi_portal_analysis_project_identifiers a rdf:Property ; rdfs:comment "identifiers for corresponding analysis projects in JGI Portal" ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:jgi_portal_identifiers , nmdc:analysis_identifiers . nmdc:jgi_portal_identifiers a rdf:Property ; rdfs:comment "identifiers for entities according to JGI Portal" ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:m_ix_s_inspired a rdf:Property ; rdfs:comment "Group of terms that appear in the 'MIxS Inspired' section of the NMDC sample metadata submission portal" ; rdfs:range xsd:string . nmdc:material_component_separation a rdf:Property ; rdfs:comment "A material processing in which components of an input material become segregated in space" ; rdfs:range xsd:string . nmdc:metagenome_assembly_parameter a rdf:Property ; rdfs:range xsd:string . nmdc:mgnify_analysis_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:mgnify_identifiers , nmdc:analysis_identifiers . nmdc:mgnify_identifiers a rdf:Property ; rdfs:seeAlso ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:mixs_env_triad_field a rdf:Property ; rdfs:comment "The MIxS environmental triad provides context about where a sample was collected and what it consists of. Its component slots capture the biome that the sample was found in, nearby geographical features that might influence the organisms in the sample, and the substance that was displaced in the process of collecting the sample. Careful population of these slots makes it easier for data users to find samples that are similar, not just in terms of textual values, but through ontological relationships. Furthermore, NMDC requires that its three component slots are populated because the INSDC Biosample databases require that they are populated because the MIxS standard from the GSC requires that they are populated." ; rdfs:seeAlso ; rdfs:range nmdc:ControlledIdentifiedTermValue . nmdc:modifier_substance a rdf:Property ; rdfs:comment "The type of modification being done" ; rdfs:range xsd:string . nmdc:ms_analysis_qc_metric a rdf:Property ; rdfs:comment "A quality control metric for mass spectrometry-based analyses." ; rdfs:range xsd:string . nmdc:neon_identifiers a rdf:Property ; rdfs:comment "identifiers for entities according to NEON" ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:object_set a rdf:Property ; rdfs:comment "Applies to a property that links a database object to a set of objects. This is necessary in a json document to provide context for a list, and to allow for a single json object that combines multiple object types" ; rdfs:range xsd:string . nmdc:omics_processing_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:ontology_class_set a rdf:Property ; rdfs:comment "This property links a database object to the set of ontology classes within it." ; rdfs:range nmdc:OntologyClass ; rdfs:subPropertyOf nmdc:object_set . nmdc:principal_investigator a rdf:Property ; rdfs:comment "Principal Investigator who led the study and/or generated the dataset." ; rdfs:range nmdc:Person . nmdc:read_qc_analysis_statistic a rdf:Property ; rdfs:range xsd:string . nmdc:sample_collection_day a rdf:Property ; rdfs:range xsd:integer . nmdc:sample_collection_hour a rdf:Property ; rdfs:range xsd:integer . nmdc:sample_collection_minute a rdf:Property ; rdfs:range xsd:integer . nmdc:sample_collection_month a rdf:Property ; rdfs:range xsd:string . nmdc:sample_collection_year a rdf:Property ; rdfs:range xsd:integer . nmdc:sample_id a rdf:Property ; rdfs:comment "Group of terms that appear in the 'Sample ID' section of the NMDC sample metadata submission portal" ; rdfs:range xsd:string . nmdc:soil_annual_season_temp a rdf:Property ; rdfs:range xsd:string . nmdc:study_identifiers a rdf:Property ; rdfs:range xsd:string ; rdfs:subPropertyOf nmdc:external_database_identifiers . nmdc:value a rdf:Property ; rdfs:range nmdc:QuantityValue . a rdfs:Datatype ; rdfs:comment "A URI or CURIE that represents an object in the model." . a rdfs:Datatype ; rdfs:comment "A URI, CURIE or BNODE that represents a node in a model." . a rdfs:Datatype ; rdfs:comment "Either a date or a datetime" . nmdc:SampleTypeEnum a rdfs:Class . nmdc:SampleTypeEnum.PLANT_ASSOCIATED a nmdc:SampleTypeEnum . nmdc:SampleTypeEnum.SEDIMENT a nmdc:SampleTypeEnum . nmdc:SampleTypeEnum.SOIL a nmdc:SampleTypeEnum . nmdc:SampleTypeEnum.SOIL_WATER_EXTRACT a nmdc:SampleTypeEnum . nmdc:SampleTypeEnum.WATER a nmdc:SampleTypeEnum . nmdc:StationaryPhaseEnum a rdfs:Class ; rdfs:comment "The type of stationary phase used in a chromatography process." . nmdc:StationaryPhaseEnum.BEH_HILIC a nmdc:StationaryPhaseEnum ; rdfs:comment "Hydrophilic Interaction Chromatography (HILIC) employing BEH (Bridged Ethylene Hybrid) particles as the stationary phase." . nmdc:StationaryPhaseEnum.C_1 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of methyl chains (C1) bonded to silica particles." . nmdc:StationaryPhaseEnum.C_18 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of octadecyl chains (C18) bonded to silica particles." . nmdc:StationaryPhaseEnum.C_2 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of ethyl chains (C2) bonded to silica particles." . nmdc:StationaryPhaseEnum.C_30 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of triacontyl chains (C30) bonded to silica particles." . nmdc:StationaryPhaseEnum.C_4 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of butyl chains (C4) bonded to silica particles." . nmdc:StationaryPhaseEnum.C_60 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of hexatriacontyl chains (C60) bonded to silica particles." . nmdc:StationaryPhaseEnum.C_8 a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase consisting of octyl chains (C8) bonded to silica particles." . nmdc:StationaryPhaseEnum.CN a nmdc:StationaryPhaseEnum ; rdfs:comment "Cyano (CN) bonded stationary phase." . nmdc:StationaryPhaseEnum.CNT a nmdc:StationaryPhaseEnum ; rdfs:comment "Carbon Nanotube stationary phase." . nmdc:StationaryPhaseEnum.DIOL a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase with diol (1,2-diol) functional groups." . nmdc:StationaryPhaseEnum.HILIC a nmdc:StationaryPhaseEnum ; rdfs:comment "Hydrophilic Interaction Chromatography (HILIC) stationary phase." . nmdc:StationaryPhaseEnum.HLB a nmdc:StationaryPhaseEnum ; rdfs:comment "Hydrophilic-Lipophilic-Balance (HLB) stationary phase." . nmdc:StationaryPhaseEnum.NH_2 a nmdc:StationaryPhaseEnum ; rdfs:comment "Amino (NH2) bonded stationary phase." . nmdc:StationaryPhaseEnum.PS_DVB a nmdc:StationaryPhaseEnum ; rdfs:comment "Polystyrene-divinylbenzene stationary phase, often used in solid-phase extraction, including proprietary Priority PolLutant (PPL)." . nmdc:StationaryPhaseEnum.PHENYL a nmdc:StationaryPhaseEnum ; rdfs:comment "Phenyl bonded stationary phase." . nmdc:StationaryPhaseEnum.POLYSILOXANE a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase made of polysiloxane, usually used in gas chromatography." . nmdc:StationaryPhaseEnum.SAX a nmdc:StationaryPhaseEnum ; rdfs:comment "Strong Anion Exchange (SAX) stationary phase." . nmdc:StationaryPhaseEnum.SCX a nmdc:StationaryPhaseEnum ; rdfs:comment "Strong Cation Exchange (SCX) stationary phase." . nmdc:StationaryPhaseEnum.SILICA a nmdc:StationaryPhaseEnum ; rdfs:comment "A stationary phase made of silica, commonly used in chromatography." . nmdc:StationaryPhaseEnum.WAX a nmdc:StationaryPhaseEnum ; rdfs:comment "Weak Anion Exchange (WAX) stationary phase." . nmdc:StationaryPhaseEnum.WCX a nmdc:StationaryPhaseEnum ; rdfs:comment "Weak Cation Exchange (WCX) stationary phase." . nmdc:StationaryPhaseEnum.ZIC_HILIC a nmdc:StationaryPhaseEnum ; rdfs:comment "Zwitterionic Hydrophilic Interaction Chromatography (ZIC-HILIC) stationary phase." . nmdc:StationaryPhaseEnum.ZIC_C_HILIC a nmdc:StationaryPhaseEnum ; rdfs:comment "Zwitterionic Charged Hydrophilic Interaction Chromatography (ZIC-cHILIC) stationary phase." . nmdc:StationaryPhaseEnum.ZIC_P_HILIC a nmdc:StationaryPhaseEnum ; rdfs:comment "Zwitterionic pH-Responsive Hydrophilic Interaction Chromatography (ZIC-pHILIC) stationary phase." . nmdc:FireplaceTypeEnum a rdfs:Class . nmdc:FireplaceTypeEnum.GAS_BURNING a nmdc:FireplaceTypeEnum . nmdc:FireplaceTypeEnum.WOOD_BURNING a nmdc:FireplaceTypeEnum . nmdc:BiosampleCategoryEnum a rdfs:Class ; rdfs:comment "Funding-based, sample location-based, or experimental method-based defined categories" . a nmdc:BiosampleCategoryEnum ; rdfs:label "Bioenergy Research Centers" ; rdfs:comment "Bioenergy Research Centers funded by the Biological Systems Science Division of the U.S. Department of Energy's Biological and Environmental Research Program." . a nmdc:BiosampleCategoryEnum ; rdfs:label "Facilities Integrating Collaborations for User Science" . a nmdc:BiosampleCategoryEnum ; rdfs:label "National Science Foundation's Long Term Ecological Research Network" . a nmdc:BiosampleCategoryEnum ; rdfs:label "National Science Foundation's National Ecological Observatory Network" . a nmdc:BiosampleCategoryEnum ; rdfs:label "Department of Energy Office of Science Biological and Environmental Research Program Laboratory Science Focus Areas" ; rdfs:comment "Science Focus Area projects funded through the Department of Energy Office of Science Biological and Environmental Research Program" . nmdc:BiosampleCategoryEnum.SIP a nmdc:BiosampleCategoryEnum . nmdc:RoomSampPosEnum a rdfs:Class . nmdc:RoomSampPosEnum.CENTER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.EAST_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.NORTH_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.NORTHEAST_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.NORTHWEST_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.SOUTH_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.SOUTHEAST_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.SOUTHWEST_CORNER a nmdc:RoomSampPosEnum . nmdc:RoomSampPosEnum.WEST_CORNER a nmdc:RoomSampPosEnum . nmdc:LibraryStrategyEnum a rdfs:Class ; rdfs:comment "Sequencing strategy used for library preparation" ; rdfs:seeAlso . nmdc:LibraryStrategyEnum.AMPLICON a nmdc:LibraryStrategyEnum ; rdfs:comment "Sequencing of overlapping or distinct PCR or RT-PCR products" . nmdc:LibraryStrategyEnum.RNA_SEQ a nmdc:LibraryStrategyEnum ; rdfs:comment "Random sequencing of whole transcriptome" ; rdfs:seeAlso . nmdc:LibraryStrategyEnum.WGA a nmdc:LibraryStrategyEnum ; rdfs:label "Whole Genome Amplification" ; rdfs:comment "Whole genome amplification followed by random sequencing." ; rdfs:seeAlso , . nmdc:LibraryStrategyEnum.WGS a nmdc:LibraryStrategyEnum ; rdfs:label "Whole Genome Sequencing" ; rdfs:comment "Random sequencing of the whole genome." ; rdfs:seeAlso . nmdc:DoorTypeEnum a rdfs:Class . nmdc:DoorTypeEnum.COMPOSITE a nmdc:DoorTypeEnum . nmdc:DoorTypeEnum.METAL a nmdc:DoorTypeEnum . nmdc:DoorTypeEnum.WOODEN a nmdc:DoorTypeEnum . nmdc:FilterTypeEnum a rdfs:Class . nmdc:FilterTypeEnum.HEPA a nmdc:FilterTypeEnum . nmdc:FilterTypeEnum.CHEMICAL_AIR_FILTER a nmdc:FilterTypeEnum . nmdc:FilterTypeEnum.ELECTROSTATIC a nmdc:FilterTypeEnum . nmdc:FilterTypeEnum.GAS_PHASE_OR_ULTRAVIOLET_AIR_TREATMENTS a nmdc:FilterTypeEnum . nmdc:FilterTypeEnum.LOW_MERV_PLEATED_MEDIA a nmdc:FilterTypeEnum . nmdc:FilterTypeEnum.PARTICULATE_AIR_FILTER a nmdc:FilterTypeEnum . nmdc:MetadataBadgeEnum a rdfs:Class ; rdfs:comment "Metadata-quality badges a Biosample can be awarded. Each permissible value names one badge topic and is present or absent; there are no levels or tiers. Badges are awarded in two ways. A completeness badge names a badge subset (a subset whose in_subset includes badge_topic) and is awarded when the record populates at least that subset's badge_minimum_slots slots; a test keeps those permissible values and subsets in sync. A provenance badge is awarded from a recorded fact about where the metadata came from, has no subset, and names its source in its own description." ; rdfs:seeAlso . nmdc:MetadataBadgeEnum.BIOGEOCHEMISTRY a nmdc:MetadataBadgeEnum ; rdfs:label "Biogeochemistry" ; rdfs:comment "Completeness badge. Awarded when the Biosample populates at least badge_minimum_slots of the biogeochemistry subset." ; rdfs:seeAlso . nmdc:MetadataBadgeEnum.EXPERT_CURATION a nmdc:MetadataBadgeEnum ; rdfs:label "Expert Curation" ; rdfs:comment "Provenance badge. Awarded when the Biosample's ProvenanceMetadata.source_system_of_record identifies the NMDC submission portal, rather than an ETL process over an external database." ; rdfs:seeAlso . nmdc:MetadataBadgeEnum.HOST_INFORMATION a nmdc:MetadataBadgeEnum ; rdfs:label "Host Information" ; rdfs:comment "Completeness badge. Awarded when the Biosample populates at least badge_minimum_slots of the host_information subset." ; rdfs:seeAlso . nmdc:MassSpectrumCollectionModeEnum a rdfs:Class . nmdc:MassSpectrumCollectionModeEnum.CENTROID a nmdc:MassSpectrumCollectionModeEnum . nmdc:MassSpectrumCollectionModeEnum.FULL_PROFILE a nmdc:MassSpectrumCollectionModeEnum . nmdc:MassSpectrumCollectionModeEnum.REDUCED_PROFILE a nmdc:MassSpectrumCollectionModeEnum . nmdc:MetabolomicsAnalysisCategoryEnum a rdfs:Class ; rdfs:comment "The category of metabolomics analysis being performed." . nmdc:MetabolomicsAnalysisCategoryEnum.GC_MS_METABOLOMICS a nmdc:MetabolomicsAnalysisCategoryEnum ; rdfs:comment "A metabolomics analysis that is performed on gas chromatography mass spectrometry data." . nmdc:MetabolomicsAnalysisCategoryEnum.LC_MS_LIPIDOMICS a nmdc:MetabolomicsAnalysisCategoryEnum ; rdfs:comment "A metabolomics analysis that is performed on liquid chromatography mass spectrometry data for lipidomics annotation." . nmdc:MetabolomicsAnalysisCategoryEnum.LC_MS_METABOLOMICS a nmdc:MetabolomicsAnalysisCategoryEnum ; rdfs:comment "A metabolomics analysis that is performed on liquid chromatography mass spectrometry data." . nmdc:MassAnalyzerEnum a rdfs:Class . nmdc:MassAnalyzerEnum.ORBITRAP a nmdc:MassAnalyzerEnum ; rdfs:comment "An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer." . nmdc:MassAnalyzerEnum.ION_CYCLOTRON_RESONANCE a nmdc:MassAnalyzerEnum ; rdfs:comment "A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z." . nmdc:MassAnalyzerEnum.ION_TRAP a nmdc:MassAnalyzerEnum ; rdfs:comment "A device for spatially confining ions using electric and magnetic fields alone or in combination." . nmdc:MassAnalyzerEnum.QUADRUPOLE a nmdc:MassAnalyzerEnum ; rdfs:comment "A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis." . nmdc:MassAnalyzerEnum.TIME_OF_FLIGHT a nmdc:MassAnalyzerEnum ; rdfs:comment "Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy." . nmdc:TrainStatLocEnum a rdfs:Class . nmdc:TrainStatLocEnum.FOREST_HILLS a nmdc:TrainStatLocEnum . nmdc:TrainStatLocEnum.RIVERSIDE a nmdc:TrainStatLocEnum . nmdc:TrainStatLocEnum.SOUTH_STATION_ABOVE_GROUND a nmdc:TrainStatLocEnum . nmdc:TrainStatLocEnum.SOUTH_STATION_AMTRAK a nmdc:TrainStatLocEnum . nmdc:TrainStatLocEnum.SOUTH_STATION_UNDERGROUND a nmdc:TrainStatLocEnum . nmdc:ChemicalEntityEnum a rdfs:Class . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum ; rdfs:seeAlso . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . a nmdc:ChemicalEntityEnum . nmdc:ArchStrucEnum a rdfs:Class . nmdc:ArchStrucEnum.BUILDING a nmdc:ArchStrucEnum . nmdc:ArchStrucEnum.HOME a nmdc:ArchStrucEnum . nmdc:ArchStrucEnum.SHED a nmdc:ArchStrucEnum . nmdc:LithologyEnum a rdfs:Class . nmdc:LithologyEnum.BASEMENT a nmdc:LithologyEnum . nmdc:LithologyEnum.CHALK a nmdc:LithologyEnum . nmdc:LithologyEnum.CHERT a nmdc:LithologyEnum . nmdc:LithologyEnum.COAL a nmdc:LithologyEnum . nmdc:LithologyEnum.CONGLOMERATE a nmdc:LithologyEnum . nmdc:LithologyEnum.DIATOMITE a nmdc:LithologyEnum . nmdc:LithologyEnum.DOLOMITE a nmdc:LithologyEnum . nmdc:LithologyEnum.LIMESTONE a nmdc:LithologyEnum . nmdc:LithologyEnum.SANDSTONE a nmdc:LithologyEnum . nmdc:LithologyEnum.SHALE a nmdc:LithologyEnum . nmdc:LithologyEnum.SILTSTONE a nmdc:LithologyEnum . nmdc:LithologyEnum.VOLCANIC a nmdc:LithologyEnum . nmdc:LithologyEnum.OTHER a nmdc:LithologyEnum . nmdc:DoorCompTypeEnum a rdfs:Class . nmdc:DoorCompTypeEnum.METAL_COVERED a nmdc:DoorCompTypeEnum . nmdc:DoorCompTypeEnum.REVOLVING a nmdc:DoorCompTypeEnum . nmdc:DoorCompTypeEnum.SLIDING a nmdc:DoorCompTypeEnum . nmdc:DoorCompTypeEnum.TELESCOPIC a nmdc:DoorCompTypeEnum . nmdc:WindowVertPosEnum a rdfs:Class . nmdc:WindowVertPosEnum.BOTTOM a nmdc:WindowVertPosEnum . nmdc:WindowVertPosEnum.HIGH a nmdc:WindowVertPosEnum . nmdc:WindowVertPosEnum.LOW a nmdc:WindowVertPosEnum . nmdc:WindowVertPosEnum.MIDDLE a nmdc:WindowVertPosEnum . nmdc:WindowVertPosEnum.TOP a nmdc:WindowVertPosEnum . nmdc:AeroStrucEnum a rdfs:Class . nmdc:AeroStrucEnum.GLIDER a nmdc:AeroStrucEnum . nmdc:AeroStrucEnum.PLANE a nmdc:AeroStrucEnum . nmdc:MechStrucEnum a rdfs:Class . nmdc:MechStrucEnum.BOAT a nmdc:MechStrucEnum . nmdc:MechStrucEnum.BUS a nmdc:MechStrucEnum . nmdc:MechStrucEnum.CAR a nmdc:MechStrucEnum . nmdc:MechStrucEnum.CARRIAGE a nmdc:MechStrucEnum . nmdc:MechStrucEnum.COACH a nmdc:MechStrucEnum . nmdc:MechStrucEnum.ELEVATOR a nmdc:MechStrucEnum . nmdc:MechStrucEnum.ESCALATOR a nmdc:MechStrucEnum . nmdc:MechStrucEnum.SUBWAY a nmdc:MechStrucEnum . nmdc:MechStrucEnum.TRAIN a nmdc:MechStrucEnum . nmdc:BiolStatEnum a rdfs:Class . nmdc:BiolStatEnum.BREEDER_S_LINE a nmdc:BiolStatEnum . nmdc:BiolStatEnum.CLONAL_SELECTION a nmdc:BiolStatEnum . nmdc:BiolStatEnum.HYBRID a nmdc:BiolStatEnum . nmdc:BiolStatEnum.INBRED_LINE a nmdc:BiolStatEnum . nmdc:BiolStatEnum.MUTANT a nmdc:BiolStatEnum . nmdc:BiolStatEnum.NATURAL a nmdc:BiolStatEnum . nmdc:BiolStatEnum.SEMI_NATURAL a nmdc:BiolStatEnum . nmdc:BiolStatEnum.WILD a nmdc:BiolStatEnum . nmdc:NucleotideSequencingEnum a rdfs:Class . a nmdc:NucleotideSequencingEnum , nmdc:AnalysisTypeEnum ; rdfs:label "Amplicon" , "Amplicon sequencing assay" . nmdc:NucleotideSequencingEnum.ISOLATE_GENOME a nmdc:NucleotideSequencingEnum ; rdfs:label "Isolate Genome" ; rdfs:comment "Sequencing of a single organism's genome, typically from a pure culture or isolate." . nmdc:NucleotideSequencingEnum.ISOLATE_TRANSCRIPTOME a nmdc:NucleotideSequencingEnum ; rdfs:label "Isolate Transcriptome" ; rdfs:comment "Sequencing of a single organism's transcriptome, typically from a pure culture or isolate." . nmdc:NucleotideSequencingEnum.METAGENOME a nmdc:NucleotideSequencingEnum ; rdfs:label "Metagenome" . nmdc:NucleotideSequencingEnum.METATRANSCRIPTOME a nmdc:NucleotideSequencingEnum ; rdfs:label "Metatranscriptome" . nmdc:GenderRestroomEnum a rdfs:Class . nmdc:GenderRestroomEnum.ALL_GENDER a nmdc:GenderRestroomEnum . nmdc:GenderRestroomEnum.FEMALE a nmdc:GenderRestroomEnum . nmdc:GenderRestroomEnum.GENDER_NEUTRAL a nmdc:GenderRestroomEnum . nmdc:GenderRestroomEnum.MALE a nmdc:GenderRestroomEnum . nmdc:GenderRestroomEnum.MALE_AND_FEMALE a nmdc:GenderRestroomEnum . nmdc:GenderRestroomEnum.UNISEX a nmdc:GenderRestroomEnum . nmdc:SedimentTypeEnum a rdfs:Class . nmdc:SedimentTypeEnum.BIOGENOUS a nmdc:SedimentTypeEnum . nmdc:SedimentTypeEnum.COSMOGENOUS a nmdc:SedimentTypeEnum . nmdc:SedimentTypeEnum.HYDROGENOUS a nmdc:SedimentTypeEnum . nmdc:SedimentTypeEnum.LITHOGENOUS a nmdc:SedimentTypeEnum . nmdc:FailureWhereEnum a rdfs:Class ; rdfs:comment "The permitted values for describing where in the process, either a lab or analysis workflow step, the failure occurred." . nmdc:FailureWhereEnum.EXTRACTION a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in extraction, a lab process." . nmdc:FailureWhereEnum.LIBRARY_PREPARATION a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in library preparation, a lab process." . nmdc:FailureWhereEnum.MAGS_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in binning, a workflow process to generate metagenome-assembled genomes (MAGS)." . nmdc:FailureWhereEnum.MASS_SPECTROMETRY a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred during mass spectrometry, a data generation process." . nmdc:FailureWhereEnum.METABOLOMICS_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in analyzing metabolomics data." . nmdc:FailureWhereEnum.METAGENOME_ANNOTATION a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in annotation, a workflow process." . nmdc:FailureWhereEnum.METAGENOME_ASSEMBLY a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in metagenome assembly, a workflow process." . nmdc:FailureWhereEnum.METAPROTEOMICS_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in analyzing metaproteomics data." . nmdc:FailureWhereEnum.METATRANSCRIPTOME_ANNOTATION a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in annotation, a workflow process." . nmdc:FailureWhereEnum.METATRANSCRIPTOME_ASSEMBLY a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in assembly, a workflow process." . nmdc:FailureWhereEnum.METATRANSCRIPTOME_EXPRESSION_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in metatranscriptome expression analysis, a workflow process." . nmdc:FailureWhereEnum.NOM_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in analyzing NOM data." . nmdc:FailureWhereEnum.NUCLEOTIDE_SEQUENCING a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred during nucleotide sequencing, a data generation process." . nmdc:FailureWhereEnum.POOLING a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in pooling, a lab process." . nmdc:FailureWhereEnum.READ_BASED_TAXONOMY_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in reads based taxonomy, a workflow process." . nmdc:FailureWhereEnum.READ_QC_ANALYSIS a nmdc:FailureWhereEnum ; rdfs:comment "A failure has occurred in read qc, a workflow process." . nmdc:SoilHorizonEnum a rdfs:Class ; rdfs:seeAlso , , , , . nmdc:SoilHorizonEnum.A_HORIZON a nmdc:SoilHorizonEnum ; rdfs:comment "The surface horizon, also called topsoil. It has a defined soil structure, and is mostly made up of humus (decayed organic matter)." . nmdc:SoilHorizonEnum.B_HORIZON a nmdc:SoilHorizonEnum ; rdfs:comment "Also known as the subsoil. It is greatly composed of material illuviated (washed in from) layers above it. It is typically denser than the A horizon and has a clayey texture." . nmdc:SoilHorizonEnum.C_HORIZON a nmdc:SoilHorizonEnum ; rdfs:comment "Also known as the substratum is unconsolidated material deepest in the pit and closest to the bedrock." . nmdc:SoilHorizonEnum.E_HORIZON a nmdc:SoilHorizonEnum ; rdfs:comment "Used to refer to subsurface horizons that have undergone a significant loss of minerals, also known as Eluviation (or leaching)." . nmdc:SoilHorizonEnum.M_HORIZON a nmdc:SoilHorizonEnum . a nmdc:SoilHorizonEnum ; rdfs:comment "The organic horizon. Typically at the top of the soil structure and is made up of mostly organic matter." . nmdc:SoilHorizonEnum.PERMAFROST a nmdc:SoilHorizonEnum ; rdfs:comment "Soil that continuously remains below 0 °C (32 °F) for two years or more." . nmdc:SoilHorizonEnum.R_LAYER a nmdc:SoilHorizonEnum ; rdfs:comment "Hard bedrock, which is usually the lowest layer. It is characterized by tightly bound and unbreakable materials." . nmdc:ManifestCategoryEnum a rdfs:Class ; rdfs:comment "A list of contexts in which some DataObjects can be analyzed together." . nmdc:ManifestCategoryEnum.FRACTIONS a nmdc:ManifestCategoryEnum ; rdfs:comment "A collection of data objects that represent fractions of a single sample." . nmdc:ManifestCategoryEnum.INSTRUMENT_RUN a nmdc:ManifestCategoryEnum ; rdfs:comment "A collection of data objects from a single run of an instrument." . nmdc:ManifestCategoryEnum.POOLABLE_REPLICATES a nmdc:ManifestCategoryEnum ; rdfs:comment "A collection of data objects that can be pooled for downstream analyses." . nmdc:WallFinishMatEnum a rdfs:Class . nmdc:WallFinishMatEnum.ACOUSTICAL_TREATMENT a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.GYPSUM_BOARD a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.GYPSUM_PLASTER a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.MASONRY a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.METAL a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.PLASTER a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.STONE_FACING a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.TERRAZZO a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.TILE a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.VENEER_PLASTER a nmdc:WallFinishMatEnum . nmdc:WallFinishMatEnum.WOOD a nmdc:WallFinishMatEnum . nmdc:QuadPosEnum a rdfs:Class . nmdc:QuadPosEnum.EAST_SIDE a nmdc:QuadPosEnum . nmdc:QuadPosEnum.NORTH_SIDE a nmdc:QuadPosEnum . nmdc:QuadPosEnum.SOUTH_SIDE a nmdc:QuadPosEnum . nmdc:QuadPosEnum.WEST_SIDE a nmdc:QuadPosEnum . nmdc:ShadingDeviceTypeEnum a rdfs:Class . nmdc:ShadingDeviceTypeEnum.BAHAMA_SHUTTERS a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.EXTERIOR_ROLL_BLIND a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.GAMBREL_AWNING a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.HOOD_AWNING a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.PORCHROLLER_AWNING a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.SARASOTA_SHUTTERS a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.SLATTED_ALUMINUM a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.SOLID_ALUMINUM_AWNING a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.SUN_SCREEN a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.TREE a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.TRELLIS a nmdc:ShadingDeviceTypeEnum . nmdc:ShadingDeviceTypeEnum.VENETIAN_AWNING a nmdc:ShadingDeviceTypeEnum . nmdc:SubmissionStatusEnum a rdfs:Class . nmdc:SubmissionStatusEnum.APPROVED_HELD a nmdc:SubmissionStatusEnum ; rdfs:label "Approved - Held" ; rdfs:comment "Submission has been reviewed and approved. Information is complete, but not yet shared on the data portal. The submitter cannot edit." . nmdc:SubmissionStatusEnum.APPROVED_PENDING_USER_FACILITY a nmdc:SubmissionStatusEnum ; rdfs:label "Approved - Sent to User Facility" ; rdfs:comment "Submission has been reviewed and approved by NMDC. Sample information has been shared with designated user facility and is ready for their review. The submitter cannot edit." . nmdc:SubmissionStatusEnum.DENIED a nmdc:SubmissionStatusEnum ; rdfs:label "Denied" ; rdfs:comment "Submission has been reviewed and denied. The submitter cannot edit." . nmdc:SubmissionStatusEnum.IN_PROGRESS a nmdc:SubmissionStatusEnum ; rdfs:label "In Progress" ; rdfs:comment "The submitter is currently working on the submission." . nmdc:SubmissionStatusEnum.RELEASED a nmdc:SubmissionStatusEnum ; rdfs:label "Released" ; rdfs:comment "Submission has been reviewed and approved and data is released on the data portal. The submitter cannot edit." . nmdc:SubmissionStatusEnum.SUBMITTED_PENDING_REVIEW a nmdc:SubmissionStatusEnum ; rdfs:label "Submitted - Pending Review" ; rdfs:comment "Submission is ready for NMDC review, the submitter cannot edit." . nmdc:SubmissionStatusEnum.UPDATES_REQUIRED a nmdc:SubmissionStatusEnum ; rdfs:label "Updates Required" ; rdfs:comment "Submission has been reviewed and submitter edits are required for approval. The submitter can edit the submission." . nmdc:LibraryTypeEnum a rdfs:Class . nmdc:LibraryTypeEnum.DNA a nmdc:LibraryTypeEnum . nmdc:LibraryTypeEnum.RNA a nmdc:LibraryTypeEnum . nmdc:FaoClassEnum a rdfs:Class . nmdc:FaoClassEnum.ACRISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.ALISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.ANDOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.ANTHROSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.ARENOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.CALCISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.CAMBISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.CHERNOZEMS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.CRYOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.DURISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.FERRALSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.FLUVISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.GLEYSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.GREYZEMS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.GYPSISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.HISTOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.KASTANOZEMS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.LEPTOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.LITHOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.LIXISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.LUVISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.NITOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.PHAEOZEMS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.PLANOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.PLINTHOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.PODZOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.PODZOLUVISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.RANKERS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.REGOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.RENDZINAS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.SOLONCHAKS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.SOLONETZ a nmdc:FaoClassEnum . nmdc:FaoClassEnum.STAGNOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.TECHNOSOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.UMBRISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.VERTISOLS a nmdc:FaoClassEnum . nmdc:FaoClassEnum.YERMOSOLS a nmdc:FaoClassEnum . nmdc:AnalysisTypeEnum a rdfs:Class . nmdc:AnalysisTypeEnum.BULK_CHEMISTRY a nmdc:AnalysisTypeEnum ; rdfs:comment "Analysis of bulk chemical properties of a sample, such as pH, conductivity, total carbon, total nitrogen, etc." . nmdc:AnalysisTypeEnum.ISOLATE_GENOME_SEQUENCING a nmdc:AnalysisTypeEnum ; rdfs:label "Isolate genome sequencing" ; rdfs:comment "Sequencing of DNA from an isolated organism, such as a pure culture." . nmdc:AnalysisTypeEnum.ISOLATE_TRANSCRIPTOME_SEQUENCING a nmdc:AnalysisTypeEnum ; rdfs:label "Isolate transcriptome sequencing" ; rdfs:comment "Sequencing of RNA from an isolated organism, such as a pure culture." . nmdc:AnalysisTypeEnum.LIPIDOMICS a nmdc:AnalysisTypeEnum ; rdfs:comment "Mass spectrometry-based analysis of lipids." . nmdc:AnalysisTypeEnum.METABOLOMICS a nmdc:AnalysisTypeEnum ; rdfs:comment "Mass spectrometry-based analysis of metabolites." . nmdc:AnalysisTypeEnum.METAGENOMICS a nmdc:AnalysisTypeEnum ; rdfs:label "Metagenomics" ; rdfs:comment "Standard short-read metagenomic sequencing" . nmdc:AnalysisTypeEnum.METAGENOMICS_LONG_READ a nmdc:AnalysisTypeEnum ; rdfs:label "Metagenomics (long read)" ; rdfs:comment "Long-read metagenomic sequencing" . nmdc:AnalysisTypeEnum.METAPROTEOMICS a nmdc:AnalysisTypeEnum ; rdfs:comment "Mass spectrometry-based analysis of proteins from a mixed community." . nmdc:AnalysisTypeEnum.METATRANSCRIPTOMICS a nmdc:AnalysisTypeEnum ; rdfs:comment "Short-read metatranscriptomic sequencing of RNA from a mixed community." . nmdc:AnalysisTypeEnum.NATURAL_ORGANIC_MATTER a nmdc:AnalysisTypeEnum ; rdfs:comment "Analysis of natural organic matter (NOM), such as by Fourier-transform ion cyclotron resonance mass spectrometry (FTICR-MS)." . nmdc:LibLayoutEnum a rdfs:Class . nmdc:LibLayoutEnum.OTHER a nmdc:LibLayoutEnum . nmdc:LibLayoutEnum.PAIRED a nmdc:LibLayoutEnum . nmdc:LibLayoutEnum.SINGLE a nmdc:LibLayoutEnum . nmdc:LibLayoutEnum.VECTOR a nmdc:LibLayoutEnum . nmdc:SampleStateEnum a rdfs:Class . nmdc:SampleStateEnum.GAS a nmdc:SampleStateEnum . nmdc:SampleStateEnum.LIQUID a nmdc:SampleStateEnum . nmdc:SampleStateEnum.SOLID a nmdc:SampleStateEnum . nmdc:SourceSystemEnum a rdfs:Class . nmdc:SourceSystemEnum.GOLD a nmdc:SourceSystemEnum ; rdfs:comment "JGI's GOLD system" ; rdfs:seeAlso . nmdc:SourceSystemEnum.NCBI a nmdc:SourceSystemEnum ; rdfs:comment "National Center for Biotechnology Information database" ; rdfs:seeAlso . nmdc:SourceSystemEnum.NEON_DATA_PORTAL a nmdc:SourceSystemEnum ; rdfs:comment "National Science Foundation National Ecologial Observatory Network's Data Portal" ; rdfs:seeAlso . nmdc:SourceSystemEnum.NMDC_SUBMISSION_PORTAL a nmdc:SourceSystemEnum ; rdfs:comment "The National Microbiome Data Collaborative's Submission Portal" ; rdfs:seeAlso . nmdc:SourceSystemEnum.CUSTOM a nmdc:SourceSystemEnum ; rdfs:comment "Metadata was generated by custom methods such as an offline spreadsheet provided by a user or staff member." ; rdfs:seeAlso . nmdc:InstrumentVendorEnum a rdfs:Class . nmdc:InstrumentVendorEnum.AGILENT a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.BRUKER a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.GILSON a nmdc:InstrumentVendorEnum . a nmdc:InstrumentVendorEnum . a nmdc:InstrumentVendorEnum . a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.PERKIN_ELMER a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.PNNL a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.SCIENTIFIC_INDUSTRIES a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.THERMO_FISHER a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.VWR a nmdc:InstrumentVendorEnum . nmdc:InstrumentVendorEnum.WATERS a nmdc:InstrumentVendorEnum . nmdc:SurfMaterialEnum a rdfs:Class . nmdc:SurfMaterialEnum.ADOBE a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.CARPET a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.CINDER_BLOCKS a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.CONCRETE a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.GLASS a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.HAY_BALES a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.METAL a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.PAINT a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.PLASTIC a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.STAINLESS_STEEL a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.STONE a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.STUCCO a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.TILE a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.VINYL a nmdc:SurfMaterialEnum . nmdc:SurfMaterialEnum.WOOD a nmdc:SurfMaterialEnum . nmdc:OxyStatSampEnum a rdfs:Class . nmdc:OxyStatSampEnum.AEROBIC a nmdc:OxyStatSampEnum . nmdc:OxyStatSampEnum.ANAEROBIC a nmdc:OxyStatSampEnum . nmdc:OxyStatSampEnum.OTHER a nmdc:OxyStatSampEnum . nmdc:TillageEnum a rdfs:Class . nmdc:TillageEnum.CHISEL a nmdc:TillageEnum . nmdc:TillageEnum.CUTTING_DISC a nmdc:TillageEnum . nmdc:TillageEnum.DISC_PLOUGH a nmdc:TillageEnum . nmdc:TillageEnum.DRILL a nmdc:TillageEnum . nmdc:TillageEnum.MOULDBOARD a nmdc:TillageEnum . nmdc:TillageEnum.RIDGE_TILL a nmdc:TillageEnum . nmdc:TillageEnum.STRIP_TILLAGE a nmdc:TillageEnum . nmdc:TillageEnum.TINED a nmdc:TillageEnum . nmdc:TillageEnum.ZONAL_TILLAGE a nmdc:TillageEnum . nmdc:BuildingSettingEnum a rdfs:Class . nmdc:BuildingSettingEnum.EXURBAN a nmdc:BuildingSettingEnum . nmdc:BuildingSettingEnum.RURAL a nmdc:BuildingSettingEnum . nmdc:BuildingSettingEnum.SUBURBAN a nmdc:BuildingSettingEnum . nmdc:BuildingSettingEnum.URBAN a nmdc:BuildingSettingEnum . nmdc:ChemicalConversionCategoryEnum a rdfs:Class . nmdc:ChemicalConversionCategoryEnum.ACID_BASE a nmdc:ChemicalConversionCategoryEnum . nmdc:ChemicalConversionCategoryEnum.ADDITION a nmdc:ChemicalConversionCategoryEnum . nmdc:ChemicalConversionCategoryEnum.COMBUSTION a nmdc:ChemicalConversionCategoryEnum . nmdc:ChemicalConversionCategoryEnum.DECOMPOSITION a nmdc:ChemicalConversionCategoryEnum . a nmdc:ChemicalConversionCategoryEnum ; rdfs:comment "an enzymatic cleavage which relies on an enzyme with protease activity to act on proteins and to produce polypeptides (protein fragments)." . nmdc:ChemicalConversionCategoryEnum.REDUCTION_OXIDATION a nmdc:ChemicalConversionCategoryEnum . nmdc:ChemicalConversionCategoryEnum.SUBSTITUTION a nmdc:ChemicalConversionCategoryEnum . nmdc:StatusEnum a rdfs:Class . nmdc:StatusEnum.FAIL a nmdc:StatusEnum . nmdc:StatusEnum.PASS a nmdc:StatusEnum . nmdc:CurLandUseEnum a rdfs:Class . nmdc:CurLandUseEnum.BADLANDS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.CITIES a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.CONIFERS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.CROP_TREES a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.FARMSTEAD a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.GRAVEL a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.HARDWOODS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.HAYLAND a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.HORTICULTURAL_PLANTS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.INDUSTRIAL_AREAS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.INTERMIXED_HARDWOOD_AND_CONIFERS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.MARSHLANDS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.MEADOWS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.MINES_QUARRIES a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.MUDFLATS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.OIL_WASTE_AREAS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.PASTURELAND a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.PERMANENT_SNOW_OR_ICE a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.RAINFOREST a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.RANGELAND a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.ROADS_RAILROADS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.ROCK a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.ROW_CROPS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SALINE_SEEPS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SALT_FLATS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SAND a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SHRUB_CROPS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SHRUB_LAND a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SMALL_GRAINS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SUCCESSIONAL_SHRUB_LAND a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.SWAMP a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.TROPICAL a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.TUNDRA a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.VEGETABLE_CROPS a nmdc:CurLandUseEnum . nmdc:CurLandUseEnum.VINE_CROPS a nmdc:CurLandUseEnum . nmdc:EluentIntroductionCategoryEnum a rdfs:Class . nmdc:EluentIntroductionCategoryEnum.DIRECT_INFUSION_AUTOSAMPLER a nmdc:EluentIntroductionCategoryEnum ; rdfs:label "direct infusion autosampler" ; rdfs:comment "The processed sample is introduced into the mass spectrometer through a direct infusion process using an autosampler." . nmdc:EluentIntroductionCategoryEnum.DIRECT_INFUSION_SYRINGE a nmdc:EluentIntroductionCategoryEnum ; rdfs:label "direct infusion syringe" ; rdfs:comment "The processed sample is introduced into the mass spectrometer through a direct infusion process using a syringe." . nmdc:EluentIntroductionCategoryEnum.GAS_CHROMATOGRAPHY a nmdc:EluentIntroductionCategoryEnum ; rdfs:label "gas chromatography" ; rdfs:comment "The processed sample is introduced into the mass spectrometer through a gas chromatography process." . nmdc:EluentIntroductionCategoryEnum.LIQUID_CHROMATOGRAPHY a nmdc:EluentIntroductionCategoryEnum ; rdfs:label "liquid chromatography" ; rdfs:comment "The processed sample is introduced into the mass spectrometer through a liquid chromatography process." . nmdc:ProtocolCategoryEnum a rdfs:Class ; rdfs:comment "The possible protocols that may be followed for an assay." . nmdc:ProtocolCategoryEnum.DERIVATIZATION a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.DNA_EXTRACTION a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.FILTER_CLEAN_UP a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.MPLEX a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.ORGANIC_MATTER_EXTRACTION a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.PH_MEASUREMENT a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.PHENOL_CHLOROFORM_EXTRACTION a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.PHOSPHORUS_EXTRACTION a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.RESPIRATION_MEASUREMENT a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.SOLID_PHASE_EXTRACTION a nmdc:ProtocolCategoryEnum . nmdc:ProtocolCategoryEnum.TEXTURE_MEASUREMENT a nmdc:ProtocolCategoryEnum . nmdc:BinQualityEnum a rdfs:Class . nmdc:BinQualityEnum.HQ a nmdc:BinQualityEnum ; rdfs:comment "Metagenome-assembled genome is high quality based on MIMAG standards (https://doi.org/10.1038/nbt.3893)" . nmdc:BinQualityEnum.LQ a nmdc:BinQualityEnum ; rdfs:comment "Metagenome-assembled genome is low quality based on MIMAG standards (https://doi.org/10.1038/nbt.3893)" . nmdc:BinQualityEnum.MQ a nmdc:BinQualityEnum ; rdfs:comment "Metagenome-assembled genome is medium quality based on MIMAG standards (https://doi.org/10.1038/nbt.3893)" . nmdc:RoomCondtEnum a rdfs:Class . nmdc:RoomCondtEnum.DAMAGED a nmdc:RoomCondtEnum . nmdc:RoomCondtEnum.NEEDS_REPAIR a nmdc:RoomCondtEnum . nmdc:RoomCondtEnum.NEW a nmdc:RoomCondtEnum . nmdc:RoomCondtEnum.RUPTURE a nmdc:RoomCondtEnum . nmdc:RoomCondtEnum.VISIBLE_SIGNS_OF_MOLD_MILDEW a nmdc:RoomCondtEnum . nmdc:RoomCondtEnum.VISIBLE_WEAR a nmdc:RoomCondtEnum . nmdc:StudyCategoryEnum a rdfs:Class . nmdc:StudyCategoryEnum.CONSORTIUM a nmdc:StudyCategoryEnum ; rdfs:comment "A group formed to undertake a venture that is beyond the capabilities of the individual members. Each member of the consortium brings a high level of expertise in a specific area to ensure the successful completion of the project." . nmdc:StudyCategoryEnum.RESEARCH_STUDY a nmdc:StudyCategoryEnum ; rdfs:comment "A detailed examination, analysis, or critical inspection of a hypothesis-driven experiment." . nmdc:SeparationMethodEnum a rdfs:Class ; rdfs:comment "The tool/substance used to separate or filter a solution or mixture." . nmdc:SeparationMethodEnum.PTFE_96_WELL_FILTER_PLATE a nmdc:SeparationMethodEnum . nmdc:SeparationMethodEnum.SYRINGE a nmdc:SeparationMethodEnum . nmdc:WindowStatusEnum a rdfs:Class . nmdc:WindowStatusEnum.CLOSED a nmdc:WindowStatusEnum . nmdc:WindowStatusEnum.OPEN a nmdc:WindowStatusEnum . nmdc:DrawingsEnum a rdfs:Class . nmdc:DrawingsEnum.AS_BUILT a nmdc:DrawingsEnum . nmdc:DrawingsEnum.BID a nmdc:DrawingsEnum . nmdc:DrawingsEnum.BUILDING_NAVIGATION_MAP a nmdc:DrawingsEnum . nmdc:DrawingsEnum.CONSTRUCTION a nmdc:DrawingsEnum . nmdc:DrawingsEnum.DESIGN a nmdc:DrawingsEnum . nmdc:DrawingsEnum.DIAGRAM a nmdc:DrawingsEnum . nmdc:DrawingsEnum.OPERATION a nmdc:DrawingsEnum . nmdc:DrawingsEnum.SKETCH a nmdc:DrawingsEnum . nmdc:IndoorSurfEnum a rdfs:Class . nmdc:IndoorSurfEnum.CABINET a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.CEILING a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.COUNTER_TOP a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.DOOR a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.SHELVING a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.VENT_COVER a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.WALL a nmdc:IndoorSurfEnum . nmdc:IndoorSurfEnum.WINDOW a nmdc:IndoorSurfEnum . nmdc:YesNoEnum a rdfs:Class ; rdfs:comment "replaces DnaDnaseEnum and DnaseRnaEnum" . nmdc:YesNoEnum.NO a nmdc:YesNoEnum . nmdc:YesNoEnum.YES a nmdc:YesNoEnum . nmdc:HandidnessEnum a rdfs:Class . nmdc:HandidnessEnum.AMBIDEXTERITY a nmdc:HandidnessEnum . nmdc:HandidnessEnum.LEFT_HANDEDNESS a nmdc:HandidnessEnum . nmdc:HandidnessEnum.MIXED_HANDEDNESS a nmdc:HandidnessEnum . nmdc:HandidnessEnum.RIGHT_HANDEDNESS a nmdc:HandidnessEnum . nmdc:IndoorSpaceEnum a rdfs:Class . nmdc:IndoorSpaceEnum.BATHROOM a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.BEDROOM a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.ELEVATOR a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.FOYER a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.HALLWAY a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.KITCHEN a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.LOCKER_ROOM a nmdc:IndoorSpaceEnum . nmdc:IndoorSpaceEnum.OFFICE a nmdc:IndoorSpaceEnum . nmdc:GeolAgeEnum a rdfs:Class . nmdc:GeolAgeEnum.ARCHEAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.CAMBRIAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.CARBONIFEROUS a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.CENOZOIC a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.CRETACEOUS a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.DEVONIAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.JURASSIC a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.MESOZOIC a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.NEOGENE a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.ORDOVICIAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.PALEOGENE a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.PALEOZOIC a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.PERMIAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.PRECAMBRIAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.PROTEROZOIC a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.SILURIAN a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.TRIASSIC a nmdc:GeolAgeEnum . nmdc:GeolAgeEnum.OTHER a nmdc:GeolAgeEnum . nmdc:FurnitureEnum a rdfs:Class . nmdc:FurnitureEnum.CABINET a nmdc:FurnitureEnum . nmdc:FurnitureEnum.CHAIR a nmdc:FurnitureEnum . nmdc:FurnitureEnum.DESKS a nmdc:FurnitureEnum . nmdc:ExecutionResourceEnum a rdfs:Class ; rdfs:seeAlso nmdc:DoiProviderEnum , nmdc:ProcessingInstitutionEnum , nmdc:ExecutionResourceEnum . nmdc:ExecutionResourceEnum.EMSL_RZR a nmdc:ExecutionResourceEnum ; rdfs:comment "Environmental Molecular Sciences Laboratory RZR cluster" . nmdc:ExecutionResourceEnum.EMSL_TAHOMA a nmdc:ExecutionResourceEnum ; rdfs:comment "Environmental Molecular Sciences Laboratory RZR Tahoma cluster" . nmdc:ExecutionResourceEnum.NERSC_CORI a nmdc:ExecutionResourceEnum ; rdfs:comment "NERSC Cori supercomputer" . nmdc:ExecutionResourceEnum.NERSC_PERLMUTTER a nmdc:ExecutionResourceEnum ; rdfs:comment "NERSC Perlmutter supercomputer" . nmdc:SpaceTypStateEnum a rdfs:Class . nmdc:SpaceTypStateEnum.TYPICALLY_OCCUPIED a nmdc:SpaceTypStateEnum . nmdc:SpaceTypStateEnum.TYPICALLY_UNOCCUPIED a nmdc:SpaceTypStateEnum . nmdc:CreditEnum a rdfs:Class ; rdfs:seeAlso . nmdc:CreditEnum.CONCEPTUALIZATION a nmdc:CreditEnum ; rdfs:comment "Conceptualization" . nmdc:CreditEnum.DATA_CURATION a nmdc:CreditEnum ; rdfs:comment "Data curation" . nmdc:CreditEnum.FORMAL_ANALYSIS a nmdc:CreditEnum ; rdfs:comment "Formal Analysis" . nmdc:CreditEnum.FUNDING_ACQUISITION a nmdc:CreditEnum ; rdfs:comment "Funding acquisition" . nmdc:CreditEnum.INVESTIGATION a nmdc:CreditEnum ; rdfs:comment "Investigation" . nmdc:CreditEnum.METHODOLOGY a nmdc:CreditEnum ; rdfs:comment "Methodology" . a nmdc:CreditEnum ; rdfs:comment "principal investigator role" . nmdc:CreditEnum.PROJECT_ADMINISTRATION a nmdc:CreditEnum ; rdfs:comment "Project administration" . nmdc:CreditEnum.RESOURCES a nmdc:CreditEnum ; rdfs:comment "Resources" . nmdc:CreditEnum.SOFTWARE a nmdc:CreditEnum ; rdfs:comment "Software" . a nmdc:CreditEnum ; rdfs:comment "the person(s) who enter study and biosample metadata into the NMDC submission portal" . nmdc:CreditEnum.SUPERVISION a nmdc:CreditEnum ; rdfs:comment "Supervision" . nmdc:CreditEnum.VALIDATION a nmdc:CreditEnum ; rdfs:comment "Validation" . nmdc:CreditEnum.VISUALIZATION a nmdc:CreditEnum ; rdfs:comment "Visualization" . nmdc:CreditEnum.WRITING_ORIGINAL_DRAFT a nmdc:CreditEnum ; rdfs:comment "Writing original draft" . nmdc:CreditEnum.WRITING_REVIEW_AND_EDITING a nmdc:CreditEnum ; rdfs:comment "Writing review & editing" . nmdc:ContainerCategoryEnum a rdfs:Class ; rdfs:comment "The permitted types of containers used in processing metabolomic samples." . nmdc:ContainerCategoryEnum.FALCON_TUBE a nmdc:ContainerCategoryEnum . nmdc:ContainerCategoryEnum.V_BOTTOM_CONICAL_TUBE a nmdc:ContainerCategoryEnum . nmdc:WallSurfTreatmentEnum a rdfs:Class . nmdc:WallSurfTreatmentEnum.FABRIC a nmdc:WallSurfTreatmentEnum . nmdc:WallSurfTreatmentEnum.NO_TREATMENT a nmdc:WallSurfTreatmentEnum . nmdc:WallSurfTreatmentEnum.PAINTED a nmdc:WallSurfTreatmentEnum . nmdc:WallSurfTreatmentEnum.PANELING a nmdc:WallSurfTreatmentEnum . nmdc:WallSurfTreatmentEnum.STUCCO a nmdc:WallSurfTreatmentEnum . nmdc:WallSurfTreatmentEnum.WALL_PAPER a nmdc:WallSurfTreatmentEnum . nmdc:StrandedOrientationEnum a rdfs:Class ; rdfs:comment "This enumeration specifies information about stranded RNA library preparations." . nmdc:StrandedOrientationEnum.ANTISENSE_ORIENTATION a nmdc:StrandedOrientationEnum ; rdfs:comment "Orientation that is complementary (non-coding) to a sequence of messenger RNA." . nmdc:StrandedOrientationEnum.SENSE_ORIENTATION a nmdc:StrandedOrientationEnum ; rdfs:comment "Orientation that corresponds to the coding sequence of messenger RNA." . nmdc:CompassDirections8Enum a rdfs:Class . nmdc:CompassDirections8Enum.EAST a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.NORTH a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.NORTHEAST a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.NORTHWEST a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.SOUTH a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.SOUTHEAST a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.SOUTHWEST a nmdc:CompassDirections8Enum . nmdc:CompassDirections8Enum.WEST a nmdc:CompassDirections8Enum . nmdc:HostSexEnum a rdfs:Class . nmdc:HostSexEnum.FEMALE a nmdc:HostSexEnum . nmdc:HostSexEnum.HERMAPHRODITE a nmdc:HostSexEnum . nmdc:HostSexEnum.MALE a nmdc:HostSexEnum . nmdc:HostSexEnum.NON_BINARY a nmdc:HostSexEnum . nmdc:HostSexEnum.TRANSGENDER a nmdc:HostSexEnum . nmdc:HostSexEnum.TRANSGENDER_FEMALE_TO_MALE a nmdc:HostSexEnum . nmdc:HostSexEnum.TRANSGENDER_MALE_TO_FEMALE a nmdc:HostSexEnum . nmdc:HostSexEnum.UNDECLARED a nmdc:HostSexEnum . nmdc:MoldVisibilityEnum a rdfs:Class . nmdc:MoldVisibilityEnum.NO_PRESENCE_OF_MOLD_VISIBLE a nmdc:MoldVisibilityEnum . nmdc:MoldVisibilityEnum.PRESENCE_OF_MOLD_VISIBLE a nmdc:MoldVisibilityEnum . nmdc:SrKerogTypeEnum a rdfs:Class . nmdc:SrKerogTypeEnum.TYPE_I a nmdc:SrKerogTypeEnum . nmdc:SrKerogTypeEnum.TYPE_II a nmdc:SrKerogTypeEnum . nmdc:SrKerogTypeEnum.TYPE_III a nmdc:SrKerogTypeEnum . nmdc:SrKerogTypeEnum.TYPE_IV a nmdc:SrKerogTypeEnum . nmdc:SrKerogTypeEnum.OTHER a nmdc:SrKerogTypeEnum . nmdc:PolarityModeEnum a rdfs:Class . nmdc:PolarityModeEnum.NEGATIVE a nmdc:PolarityModeEnum . nmdc:PolarityModeEnum.POSITIVE a nmdc:PolarityModeEnum . nmdc:UnitEnum a rdfs:Class . nmdc:UnitEnum.1 a nmdc:UnitEnum ; rdfs:label "ratio/unitless" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of dimensionless quantity." . nmdc:UnitEnum.1_SFT_I a nmdc:UnitEnum ; rdfs:label "per square foot" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of per square foot." . nmdc:UnitEnum.1_D a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of per day (frequency)." . nmdc:UnitEnum.BQ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of becquerel." . nmdc:UnitEnum.CEL a nmdc:UnitEnum ; rdfs:label "degrees Celsius" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of degrees Celsius; a SI unit of temperature equal to one unit Kelvin." . nmdc:UnitEnum.CI a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of curie." . nmdc:UnitEnum.G_BQ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of gigabecquerel." . nmdc:UnitEnum.G_HZ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of gigahertz." . nmdc:UnitEnum.GY a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of gray (absorbed dose)." . nmdc:UnitEnum.HZ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of hertz." . nmdc:UnitEnum.J a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of joule." . nmdc:UnitEnum.J_K a nmdc:UnitEnum ; rdfs:label "J/degree Celsius" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of joule per kelvin." . nmdc:UnitEnum.L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of liter." . nmdc:UnitEnum.L_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of liters per hour." . nmdc:UnitEnum.L_S a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of liters per second." . nmdc:UnitEnum.M_BQ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of megabecquerel." . nmdc:UnitEnum.M_HZ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of megahertz." . nmdc:UnitEnum.MJ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of megajoule." . nmdc:UnitEnum.N a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of newton." . nmdc:UnitEnum.PERCENT a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of percent." . nmdc:UnitEnum.RAD a nmdc:UnitEnum ; rdfs:label "rad (radiation absorbed dose)" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of rad (radiation absorbed dose)." , "The Unified Code for Units of Measure (UCUM) representation of radian." . nmdc:UnitEnum.U a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of enzyme unit." . nmdc:UnitEnum.V a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of volt." . nmdc:UnitEnum.W a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of watt." . nmdc:UnitEnum.W_M_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of watts per square meter." . nmdc:UnitEnum.FNU a nmdc:UnitEnum ; rdfs:label "Formazin Nephelometric Units" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of Formazin Nephelometric Units." . nmdc:UnitEnum.NTU a nmdc:UnitEnum ; rdfs:label "Nephelometric Turbidity Units" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of Nephelometric Turbidity Units." . nmdc:UnitEnum.CFT_I a nmdc:UnitEnum ; rdfs:label "cubic feet" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of cubic feet." . nmdc:UnitEnum.G a nmdc:UnitEnum ; rdfs:label "standard gravity" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of standard gravity." , "The Unified Code for Units of Measure (UCUM) representation of gram." . nmdc:UnitEnum.IN_I a nmdc:UnitEnum ; rdfs:label "inches" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of inch." . nmdc:UnitEnum.KN_I a nmdc:UnitEnum ; rdfs:label "knots" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of knot (nautical miles per hour)." . nmdc:UnitEnum.LB_AV a nmdc:UnitEnum ; rdfs:label "pounds (avoirdupois)" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of pound (avoirdupois)." . nmdc:UnitEnum.P_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of pH units." . nmdc:UnitEnum.PPB a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of parts per billion." . nmdc:UnitEnum.PPM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of parts per million." ; rdfs:seeAlso , . nmdc:UnitEnum.PPTH a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of parts per thousand." . nmdc:UnitEnum.SFT_I a nmdc:UnitEnum ; rdfs:label "square feet" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of square feet." . nmdc:UnitEnum.A a nmdc:UnitEnum ; rdfs:label "years" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of year." . nmdc:UnitEnum.ATM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of atmosphere." . nmdc:UnitEnum.C_P a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of centipoise." . nmdc:UnitEnum.CM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of centimeter." . nmdc:UnitEnum.CM_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of square centimeter." . nmdc:UnitEnum.CM_3_CM_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of cubic centimeters per cubic centimeter." . nmdc:UnitEnum.D a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of day." . nmdc:UnitEnum.DEG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of degree (angle)." . nmdc:UnitEnum.ERG_CM_2_S a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of ergs per square centimeter per second." . nmdc:UnitEnum.G_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of grams per liter." . nmdc:UnitEnum.G_CM_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of grams per cubic centimeter." . nmdc:UnitEnum.G_G a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of gram per gram." . nmdc:UnitEnum.G_KG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of grams per kilogram." . nmdc:UnitEnum.G_M_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of grams per square meter." . nmdc:UnitEnum.G_M_2_D a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of grams per square meter per day." . nmdc:UnitEnum.G_M_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of grams per cubic meter." . nmdc:UnitEnum.H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of hour." . nmdc:UnitEnum.K_BQ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilobecquerel." . nmdc:UnitEnum.K_HZ a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilohertz." . nmdc:UnitEnum.K_J a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilojoule." . nmdc:UnitEnum.K_N a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilonewton." . nmdc:UnitEnum.K_PA a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilopascal." . nmdc:UnitEnum.K_W a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilowatt." . nmdc:UnitEnum.K_W_M_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilowatts per square meter." . nmdc:UnitEnum.K_W_M_2_D a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilowatts per square meter per day." . nmdc:UnitEnum.KG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilogram." . nmdc:UnitEnum.KG_KG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilogram per kilogram." . nmdc:UnitEnum.KG_M_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilograms per cubic meter." . nmdc:UnitEnum.KM_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of kilometers per hour." . nmdc:UnitEnum.LM_M_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of lumens per square meter." . nmdc:UnitEnum.LX a nmdc:UnitEnum ; rdfs:label "lux" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of lux." . nmdc:UnitEnum.M a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of meter." . nmdc:UnitEnum.M_S a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of meters per second." . nmdc:UnitEnum.M_S_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of meters per second squared." . nmdc:UnitEnum.M_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of square meters." . nmdc:UnitEnum.M_2_S a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of square meters per second." . nmdc:UnitEnum.M_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of cubic meter." . nmdc:UnitEnum.M_3_D a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of cubic meters per day." . nmdc:UnitEnum.M_3_MIN a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of cubic meters per minute." . nmdc:UnitEnum.M_3_S a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of cubic meters per second." . nmdc:UnitEnum.M_CI a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millicurie." . nmdc:UnitEnum.M_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milliliter." . nmdc:UnitEnum.M_L_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milliliters per liter." . nmdc:UnitEnum.M_S_CM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millisiemens per centimeter." . nmdc:UnitEnum.M_U a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millienzyme unit." . nmdc:UnitEnum.M_V a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millivolt." . nmdc:UnitEnum.MBAR a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millibar." . nmdc:UnitEnum.MEQ_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milliequivalents per liter." . nmdc:UnitEnum.MG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milligram." . nmdc:UnitEnum.MG_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milligrams per liter." . nmdc:UnitEnum.MG_G a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milligrams per gram." . nmdc:UnitEnum.MG_KG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milligrams per kilogram." . nmdc:UnitEnum.MG_M_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milligrams per cubic meter." . nmdc:UnitEnum.MG_M_3_D a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of milligrams per cubic meter per day." . nmdc:UnitEnum.MIN a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of minute." . nmdc:UnitEnum.MM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millimeter." . nmdc:UnitEnum.MM_A a nmdc:UnitEnum ; rdfs:label "millimeters per year" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millimeters per year." . nmdc:UnitEnum.MM_HG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millimeters of mercury." . nmdc:UnitEnum.MMOL a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millimole." . nmdc:UnitEnum.MMOL_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of millimolar." . nmdc:UnitEnum.MOL a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of mole." . nmdc:UnitEnum.MOL_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of moles per liter." . nmdc:UnitEnum.MOL_L_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of moles per liter per hour." . nmdc:UnitEnum.MOL_G a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of moles per gram." . nmdc:UnitEnum.N_CI a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanocurie." . nmdc:UnitEnum.N_U a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanoenzyme unit." . nmdc:UnitEnum.NG_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanograms per liter." . nmdc:UnitEnum.NG_G a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanograms per gram." . nmdc:UnitEnum.NG_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanograms per hour." . nmdc:UnitEnum.NG_M_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanograms per milliliter." . nmdc:UnitEnum.NMOL a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of nanomole." . nmdc:UnitEnum.P_CI a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of picocurie." . nmdc:UnitEnum.PG_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of picograms per liter." . nmdc:UnitEnum.PG_G a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of picograms per gram." . nmdc:UnitEnum.PG_M_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of picograms per milliliter." . nmdc:UnitEnum.PMOL a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of picomole." . nmdc:UnitEnum.SR a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of steradian." . nmdc:UnitEnum.U_CI a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of microcurie." . nmdc:UnitEnum.U_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of microliter." . nmdc:UnitEnum.U_L_KG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of microliters per kilogram." . nmdc:UnitEnum.U_S_CM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of microsiemens per centimeter." . nmdc:UnitEnum.U_U a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of microenzyme unit." . nmdc:UnitEnum.UG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of microgram." . nmdc:UnitEnum.UG_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrograms per liter." . nmdc:UnitEnum.UG_L_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrograms per liter per hour." . nmdc:UnitEnum.UG_G a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrograms per gram." . nmdc:UnitEnum.UG_M_3 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrograms per cubic meter." . nmdc:UnitEnum.UG_M_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrograms per milliliter." . nmdc:UnitEnum.UG_U_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrograms per microliter." . nmdc:UnitEnum.UM a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micrometer." . nmdc:UnitEnum.UMOL a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micromole." . nmdc:UnitEnum.UMOL_L a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micromoles per liter." . nmdc:UnitEnum.UMOL_L_H a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micromoles per liter per hour." . nmdc:UnitEnum.UMOL_KG a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micromoles per kilogram." . nmdc:UnitEnum.UMOL_M_2_S a nmdc:UnitEnum ; rdfs:label "micromoles per square meter per second" ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micromoles per square meter per second." . nmdc:UnitEnum.UMOL_S_M_2 a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of micromoles per second per square meter." . nmdc:UnitEnum.WK a nmdc:UnitEnum ; rdfs:comment "The Unified Code for Units of Measure (UCUM) representation of week." . nmdc:DoorDirectEnum a rdfs:Class . nmdc:DoorDirectEnum.INWARD a nmdc:DoorDirectEnum . nmdc:DoorDirectEnum.OUTWARD a nmdc:DoorDirectEnum . nmdc:DoorDirectEnum.SIDEWAYS a nmdc:DoorDirectEnum . nmdc:RoomLocEnum a rdfs:Class . nmdc:RoomLocEnum.CORNER_ROOM a nmdc:RoomLocEnum . nmdc:RoomLocEnum.EXTERIOR_WALL a nmdc:RoomLocEnum . nmdc:RoomLocEnum.INTERIOR_ROOM a nmdc:RoomLocEnum . nmdc:LibrarySourceEnum a rdfs:Class ; rdfs:comment "Molecular source of the sequencing library" ; rdfs:seeAlso . nmdc:LibrarySourceEnum.GENOMIC a nmdc:LibrarySourceEnum ; rdfs:comment "Genomic DNA (includes PCR products from genomic DNA)" . nmdc:LibrarySourceEnum.GENOMIC_SINGLE_CELL a nmdc:LibrarySourceEnum ; rdfs:comment "Single cell genomic DNA source" . nmdc:LibrarySourceEnum.METAGENOMIC a nmdc:LibrarySourceEnum ; rdfs:comment "Mixed material from metagenome" . nmdc:LibrarySourceEnum.METATRANSCRIPTOMIC a nmdc:LibrarySourceEnum ; rdfs:comment "Transcription products from community targets" . nmdc:LibrarySourceEnum.OTHER a nmdc:LibrarySourceEnum ; rdfs:comment "Other, unspecified, or unknown library source material " . nmdc:LibrarySourceEnum.SYNTHETIC a nmdc:LibrarySourceEnum ; rdfs:comment "Synthetic DNA" . nmdc:LibrarySourceEnum.TRANSCRIPTOMIC a nmdc:LibrarySourceEnum ; rdfs:comment "Transcription products or non-genomic DNA" . nmdc:LibrarySourceEnum.TRANSCRIPTOMIC_SINGLE_CELL a nmdc:LibrarySourceEnum ; rdfs:comment "Single cell transcriptomic source" . nmdc:LibrarySourceEnum.VIRAL_RNA a nmdc:LibrarySourceEnum ; rdfs:comment "Viral RNA" . nmdc:TrainStopLocEnum a rdfs:Class . nmdc:TrainStopLocEnum.DOWNTOWN a nmdc:TrainStopLocEnum . nmdc:TrainStopLocEnum.END a nmdc:TrainStopLocEnum . nmdc:TrainStopLocEnum.MID a nmdc:TrainStopLocEnum . nmdc:SampSubtypeEnum a rdfs:Class . nmdc:SampSubtypeEnum.BIOFILM a nmdc:SampSubtypeEnum . nmdc:SampSubtypeEnum.NOT_APPLICABLE a nmdc:SampSubtypeEnum . nmdc:SampSubtypeEnum.OIL_PHASE a nmdc:SampSubtypeEnum . nmdc:SampSubtypeEnum.OTHER a nmdc:SampSubtypeEnum . nmdc:SampSubtypeEnum.WATER_PHASE a nmdc:SampSubtypeEnum . nmdc:TrainLineEnum a rdfs:Class . nmdc:TrainLineEnum.GREEN a nmdc:TrainLineEnum . nmdc:TrainLineEnum.ORANGE a nmdc:TrainLineEnum . nmdc:TrainLineEnum.RED a nmdc:TrainLineEnum . nmdc:DamagedEnum a rdfs:Class . nmdc:DamagedEnum.DAMAGED a nmdc:DamagedEnum . nmdc:DamagedEnum.NEEDS_REPAIR a nmdc:DamagedEnum . nmdc:DamagedEnum.NEW a nmdc:DamagedEnum . nmdc:DamagedEnum.RUPTURE a nmdc:DamagedEnum . nmdc:DamagedEnum.VISIBLE_WEAR a nmdc:DamagedEnum . nmdc:ProcessingInstitutionEnum a rdfs:Class . a nmdc:ProcessingInstitutionEnum ; rdfs:label "Argonne National Laboratory" . a nmdc:ProcessingInstitutionEnum ; rdfs:label "Azenta Life Sciences" . a nmdc:ProcessingInstitutionEnum ; rdfs:label "Battelle Memorial Institute" . a nmdc:ProcessingInstitutionEnum , nmdc:DoiProviderEnum ; rdfs:label "Environmental Molecular Sciences Laboratory" , "EMSL" . a nmdc:ProcessingInstitutionEnum , nmdc:DoiProviderEnum ; rdfs:label "Joint Genome Institute" , "JGI" . a nmdc:ProcessingInstitutionEnum ; rdfs:label "National Microbiome Data Collaborative" . a nmdc:ProcessingInstitutionEnum ; rdfs:label "SeqCenter" . a nmdc:ProcessingInstitutionEnum ; rdfs:label "University of California, Davis Genome Center" . a nmdc:ProcessingInstitutionEnum ; rdfs:label "University of California, San Diego" . nmdc:HeatSysDelivMethEnum a rdfs:Class . nmdc:HeatSysDelivMethEnum.CONDUCTIVE a nmdc:HeatSysDelivMethEnum . nmdc:HeatSysDelivMethEnum.RADIANT a nmdc:HeatSysDelivMethEnum . nmdc:PlantSexEnum a rdfs:Class . nmdc:PlantSexEnum.ANDRODIOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.ANDROECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.ANDROGYNOMONOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.ANDROGYNOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.ANDROMONOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.BISEXUAL a nmdc:PlantSexEnum . nmdc:PlantSexEnum.DICHOGAMOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.DICLINOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.DIOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.GYNODIOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.GYNOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.GYNOMONOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.HERMAPHRODITIC a nmdc:PlantSexEnum . nmdc:PlantSexEnum.IMPERFECT a nmdc:PlantSexEnum . nmdc:PlantSexEnum.MONOCLINOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.MONOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.PERFECT a nmdc:PlantSexEnum . nmdc:PlantSexEnum.POLYGAMODIOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.POLYGAMOMONOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.POLYGAMOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.PROTANDROUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.PROTOGYNOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.SUBANDROECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.SUBDIOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.SUBGYNOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.SYNOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.TRIMONOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.TRIOECIOUS a nmdc:PlantSexEnum . nmdc:PlantSexEnum.UNISEXUAL a nmdc:PlantSexEnum . nmdc:WeekdayEnum a rdfs:Class . nmdc:WeekdayEnum.FRIDAY a nmdc:WeekdayEnum . nmdc:WeekdayEnum.MONDAY a nmdc:WeekdayEnum . nmdc:WeekdayEnum.SATURDAY a nmdc:WeekdayEnum . nmdc:WeekdayEnum.SUNDAY a nmdc:WeekdayEnum . nmdc:WeekdayEnum.THURSDAY a nmdc:WeekdayEnum . nmdc:WeekdayEnum.TUESDAY a nmdc:WeekdayEnum . nmdc:WeekdayEnum.WEDNESDAY a nmdc:WeekdayEnum . nmdc:FailureWhatEnum a rdfs:Class ; rdfs:comment "The permitted values for describing where a failure occurred during processing in the lab during analysis workflows." . nmdc:FailureWhatEnum.ASSEMBLY_SIZE_TOO_SMALL a nmdc:FailureWhatEnum ; rdfs:comment "The size of the metagenome or metatranscriptome assembly is too small to proceed to the next analysis workflow." . nmdc:FailureWhatEnum.LOW_C_13_ISOTOPOLOGUE_ASSIGNMENT a nmdc:FailureWhatEnum ; rdfs:comment "Number of 13C isotopologues identified during the Metabolomics or Lipidomics workflow is not sufficient." . nmdc:FailureWhatEnum.LOW_METABOLITE_ASSIGNMENT a nmdc:FailureWhatEnum ; rdfs:comment "Number of metabolites identified during the Metabolomics or Lipidomics workflow is not sufficient." . nmdc:FailureWhatEnum.LOW_MOLECULAR_FORMULA_ASSIGNMENT a nmdc:FailureWhatEnum ; rdfs:comment "Number of peaks with assigned molecular formulas during the workflow is not sufficient." . nmdc:FailureWhatEnum.LOW_PEPTIDE_TO_SPECTRUM_MATCH_RATE a nmdc:FailureWhatEnum ; rdfs:comment "Rate of peptide assignment during the analysis is not sufficient." . nmdc:FailureWhatEnum.LOW_READ_COUNT a nmdc:FailureWhatEnum ; rdfs:comment "Number of output reads is not sufficient to continue to the next analysis step." . nmdc:FailureWhatEnum.MALFORMED_DATA a nmdc:FailureWhatEnum ; rdfs:comment "Workflow failure reading input or writing the output file(s)." . nmdc:FailureWhatEnum.NO_VALID_DATA_GENERATED a nmdc:FailureWhatEnum ; rdfs:comment "A process ran but did not produce any output. Ie binning ran but did not produce any medium or high quality bins." . nmdc:FailureWhatEnum.OTHER a nmdc:FailureWhatEnum ; rdfs:comment "A lab process or analysis workflow has failed in a way that has not been captured by the available values yet. Please use slot 'qc_comment' to specify details." . nmdc:DoiCategoryEnum a rdfs:Class ; rdfs:seeAlso , . nmdc:DoiCategoryEnum.AWARD_DOI a nmdc:DoiCategoryEnum ; rdfs:comment "A type of DOI that resolves to a funding authority." . nmdc:DoiCategoryEnum.DATA_MANAGEMENT_PLAN_DOI a nmdc:DoiCategoryEnum ; rdfs:comment "A type of DOI that resolves to a data management plan." . nmdc:DoiCategoryEnum.DATASET_DOI a nmdc:DoiCategoryEnum ; rdfs:comment "A type of DOI that resolves to generated data." . nmdc:DoiCategoryEnum.PUBLICATION_DOI a nmdc:DoiCategoryEnum ; rdfs:comment "A type of DOI that resolves to a publication." . nmdc:BuiltStrucSetEnum a rdfs:Class . nmdc:BuiltStrucSetEnum.RURAL a nmdc:BuiltStrucSetEnum . nmdc:BuiltStrucSetEnum.URBAN a nmdc:BuiltStrucSetEnum . nmdc:SurfAirContEnum a rdfs:Class . nmdc:SurfAirContEnum.BIOCIDES a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.BIOLOGICAL_CONTAMINANTS a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.DUST a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.NUTRIENTS a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.ORGANIC_MATTER a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.PARTICULATE_MATTER a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.RADON a nmdc:SurfAirContEnum . nmdc:SurfAirContEnum.VOLATILE_ORGANIC_COMPOUNDS a nmdc:SurfAirContEnum . nmdc:SeasonUseEnum a rdfs:Class . nmdc:SeasonUseEnum.FALL a nmdc:SeasonUseEnum . nmdc:SeasonUseEnum.SPRING a nmdc:SeasonUseEnum . nmdc:SeasonUseEnum.SUMMER a nmdc:SeasonUseEnum . nmdc:SeasonUseEnum.WINTER a nmdc:SeasonUseEnum . nmdc:DrainageClassEnum a rdfs:Class . nmdc:DrainageClassEnum.EXCESSIVELY_DRAINED a nmdc:DrainageClassEnum . nmdc:DrainageClassEnum.MODERATELY_WELL a nmdc:DrainageClassEnum . nmdc:DrainageClassEnum.POORLY a nmdc:DrainageClassEnum . nmdc:DrainageClassEnum.SOMEWHAT_POORLY a nmdc:DrainageClassEnum . nmdc:DrainageClassEnum.VERY_POORLY a nmdc:DrainageClassEnum . nmdc:DrainageClassEnum.WELL a nmdc:DrainageClassEnum . nmdc:SubstructureTypeEnum a rdfs:Class . nmdc:SubstructureTypeEnum.BASEMENT a nmdc:SubstructureTypeEnum . nmdc:SubstructureTypeEnum.CRAWLSPACE a nmdc:SubstructureTypeEnum . nmdc:SubstructureTypeEnum.SLAB_ON_GRADE a nmdc:SubstructureTypeEnum . nmdc:FreqCleanEnum a rdfs:Class . nmdc:FreqCleanEnum.ANNUALLY a nmdc:FreqCleanEnum . nmdc:FreqCleanEnum.DAILY a nmdc:FreqCleanEnum . nmdc:FreqCleanEnum.MONTHLY a nmdc:FreqCleanEnum . nmdc:FreqCleanEnum.QUARTERLY a nmdc:FreqCleanEnum . nmdc:FreqCleanEnum.WEEKLY a nmdc:FreqCleanEnum . nmdc:FreqCleanEnum.OTHER a nmdc:FreqCleanEnum . nmdc:SeasonEnum a rdfs:Class . a nmdc:SeasonEnum . a nmdc:SeasonEnum . a nmdc:SeasonEnum . a nmdc:SeasonEnum . nmdc:ChromatographicCategoryEnum a rdfs:Class . nmdc:ChromatographicCategoryEnum.GAS_CHROMATOGRAPHY a nmdc:ChromatographicCategoryEnum . nmdc:ChromatographicCategoryEnum.LIQUID_CHROMATOGRAPHY a nmdc:ChromatographicCategoryEnum . nmdc:ChromatographicCategoryEnum.SOLID_PHASE_EXTRACTION a nmdc:ChromatographicCategoryEnum . nmdc:WindowMatEnum a rdfs:Class . nmdc:WindowMatEnum.CLAD a nmdc:WindowMatEnum . nmdc:WindowMatEnum.FIBERGLASS a nmdc:WindowMatEnum . nmdc:WindowMatEnum.METAL a nmdc:WindowMatEnum . nmdc:WindowMatEnum.VINYL a nmdc:WindowMatEnum . nmdc:WindowMatEnum.WOOD a nmdc:WindowMatEnum . nmdc:GrowthHabitEnum a rdfs:Class . nmdc:GrowthHabitEnum.ERECT a nmdc:GrowthHabitEnum . nmdc:GrowthHabitEnum.PROSTRATE a nmdc:GrowthHabitEnum . nmdc:GrowthHabitEnum.SEMI_ERECT a nmdc:GrowthHabitEnum . nmdc:GrowthHabitEnum.SPREADING a nmdc:GrowthHabitEnum . nmdc:ResolutionCategoryEnum a rdfs:Class . nmdc:ResolutionCategoryEnum.HIGH a nmdc:ResolutionCategoryEnum ; rdfs:comment "higher than unit resolution" . nmdc:ResolutionCategoryEnum.LOW a nmdc:ResolutionCategoryEnum ; rdfs:comment "at unit resolution" . nmdc:CeilFinishMatEnum a rdfs:Class . nmdc:CeilFinishMatEnum.PVC a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.DRYWALL a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.FIBERGLASS a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.METAL a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.MINERAL_FIBRE a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.MINERAL_WOOL_CALCIUM_SILICATE a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.PLASTERBOARD a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.STUCCO a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.TILES a nmdc:CeilFinishMatEnum . nmdc:CeilFinishMatEnum.WOOD a nmdc:CeilFinishMatEnum . nmdc:BuildDocsEnum a rdfs:Class . nmdc:BuildDocsEnum.BUILDING_INFORMATION_MODEL a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.COMMISSIONING_REPORT a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.COMPLAINT_LOGS a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.CONTRACT_ADMINISTRATION a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.COST_ESTIMATE a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.JANITORIAL_SCHEDULES_OR_LOGS a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.MAINTENANCE_PLANS a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.SCHEDULE a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.SECTIONS a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.SHOP_DRAWINGS a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.SUBMITTALS a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.VENTILATION_SYSTEM a nmdc:BuildDocsEnum . nmdc:BuildDocsEnum.WINDOWS a nmdc:BuildDocsEnum . nmdc:CeilingWallTextureEnum a rdfs:Class . nmdc:CeilingWallTextureEnum.SANTA_FE_TEXTURE a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.CROWS_FEET a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.CROWS_FOOT_STOMP a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.DOUBLE_SKIP a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.HAWK_AND_TROWEL a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.KNOCKDOWN a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.ORANGE_PEEL a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.POPCORN a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.ROSEBUD_STOMP a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.SKIP_TROWEL a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.SMOOTH a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.STOMP_KNOCKDOWN a nmdc:CeilingWallTextureEnum . nmdc:CeilingWallTextureEnum.SWIRL a nmdc:CeilingWallTextureEnum . nmdc:LightTypeEnum a rdfs:Class . nmdc:LightTypeEnum.DESK_LAMP a nmdc:LightTypeEnum . nmdc:LightTypeEnum.ELECTRIC_LIGHT a nmdc:LightTypeEnum . nmdc:LightTypeEnum.FLUORESCENT_LIGHTS a nmdc:LightTypeEnum . nmdc:LightTypeEnum.NATURAL_LIGHT a nmdc:LightTypeEnum . nmdc:LightTypeEnum.NONE a nmdc:LightTypeEnum . nmdc:WindowTypeEnum a rdfs:Class . nmdc:WindowTypeEnum.FIXED_WINDOW a nmdc:WindowTypeEnum . nmdc:WindowTypeEnum.HORIZONTAL_SASH_WINDOW a nmdc:WindowTypeEnum . nmdc:WindowTypeEnum.SINGLE_HUNG_SASH_WINDOW a nmdc:WindowTypeEnum . nmdc:HcProducedEnum a rdfs:Class . nmdc:HcProducedEnum.BITUMEN a nmdc:HcProducedEnum . nmdc:HcProducedEnum.COALBED_METHANE a nmdc:HcProducedEnum . nmdc:HcProducedEnum.GAS a nmdc:HcProducedEnum . nmdc:HcProducedEnum.GAS_CONDENSATE a nmdc:HcProducedEnum . nmdc:HcProducedEnum.OIL a nmdc:HcProducedEnum . nmdc:HcProducedEnum.OTHER a nmdc:HcProducedEnum . nmdc:BuildOccupTypeEnum a rdfs:Class . nmdc:BuildOccupTypeEnum.AIRPORT a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.COMMERCIAL a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.HEALTH_CARE a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.HIGH_RISE a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.LOW_RISE a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.MARKET a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.OFFICE a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.RESIDENCE a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.RESIDENTIAL a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.RESTAURANT a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.SCHOOL a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.SPORTS_COMPLEX a nmdc:BuildOccupTypeEnum . nmdc:BuildOccupTypeEnum.WOOD_FRAMED a nmdc:BuildOccupTypeEnum . nmdc:OccupDocumentEnum a rdfs:Class . nmdc:OccupDocumentEnum.AUTOMATED_COUNT a nmdc:OccupDocumentEnum . nmdc:OccupDocumentEnum.ESTIMATE a nmdc:OccupDocumentEnum . nmdc:OccupDocumentEnum.MANUAL_COUNT a nmdc:OccupDocumentEnum . nmdc:OccupDocumentEnum.VIDEOS a nmdc:OccupDocumentEnum . nmdc:ProfilePositionEnum a rdfs:Class . nmdc:ProfilePositionEnum.BACKSLOPE a nmdc:ProfilePositionEnum . nmdc:ProfilePositionEnum.FOOTSLOPE a nmdc:ProfilePositionEnum . nmdc:ProfilePositionEnum.SHOULDER a nmdc:ProfilePositionEnum . nmdc:ProfilePositionEnum.SUMMIT a nmdc:ProfilePositionEnum . nmdc:ProfilePositionEnum.TOESLOPE a nmdc:ProfilePositionEnum . nmdc:SrDepEnvEnum a rdfs:Class . nmdc:SrDepEnvEnum.FLUVIOLDELTAIC a nmdc:SrDepEnvEnum . nmdc:SrDepEnvEnum.FLUVIOMARINE a nmdc:SrDepEnvEnum . nmdc:SrDepEnvEnum.LACUSTINE a nmdc:SrDepEnvEnum . nmdc:SrDepEnvEnum.MARINE a nmdc:SrDepEnvEnum . nmdc:SrDepEnvEnum.OTHER a nmdc:SrDepEnvEnum . nmdc:FloorWaterMoldEnum a rdfs:Class . nmdc:FloorWaterMoldEnum.BULGING_WALLS a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.CEILING_DISCOLORATION a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.CONDENSATION a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.FLOOR_DISCOLORATION a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.MOLD_ODOR a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.PEELING_PAINT_OR_WALLPAPER a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.WALL_DISCOLORATION a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.WATER_STAINS a nmdc:FloorWaterMoldEnum . nmdc:FloorWaterMoldEnum.WET_FLOOR a nmdc:FloorWaterMoldEnum . nmdc:DamagedRupturedEnum a rdfs:Class . nmdc:DamagedRupturedEnum.DAMAGED a nmdc:DamagedRupturedEnum . nmdc:DamagedRupturedEnum.NEEDS_REPAIR a nmdc:DamagedRupturedEnum . nmdc:DamagedRupturedEnum.NEW a nmdc:DamagedRupturedEnum . nmdc:DamagedRupturedEnum.RUPTURE a nmdc:DamagedRupturedEnum . nmdc:DamagedRupturedEnum.VISIBLE_WEAR a nmdc:DamagedRupturedEnum . nmdc:MassSpectrometryEnum a rdfs:Class . nmdc:MassSpectrometryEnum.LIPIDOME a nmdc:MassSpectrometryEnum ; rdfs:label "Lipidome" . nmdc:MassSpectrometryEnum.METABOLOME a nmdc:MassSpectrometryEnum ; rdfs:label "Metabolome" . nmdc:MassSpectrometryEnum.METAPROTEOME a nmdc:MassSpectrometryEnum ; rdfs:label "Metaproteome" . nmdc:MassSpectrometryEnum.NOM a nmdc:MassSpectrometryEnum ; rdfs:label "Natural Organic Matter" . nmdc:HcrEnum a rdfs:Class . nmdc:HcrEnum.COALBED a nmdc:HcrEnum . nmdc:HcrEnum.GAS_RESERVOIR a nmdc:HcrEnum . nmdc:HcrEnum.OIL_RESERVOIR a nmdc:HcrEnum . nmdc:HcrEnum.OIL_SAND a nmdc:HcrEnum . nmdc:HcrEnum.SHALE a nmdc:HcrEnum . nmdc:HcrEnum.TIGHT_GAS_RESERVOIR a nmdc:HcrEnum . nmdc:HcrEnum.TIGHT_OIL_RESERVOIR a nmdc:HcrEnum . nmdc:HcrEnum.OTHER a nmdc:HcrEnum . nmdc:RelSampLocEnum a rdfs:Class . nmdc:RelSampLocEnum.CENTER_OF_CAR a nmdc:RelSampLocEnum . nmdc:RelSampLocEnum.EDGE_OF_CAR a nmdc:RelSampLocEnum . nmdc:RelSampLocEnum.UNDER_A_SEAT a nmdc:RelSampLocEnum . nmdc:SampDisStageEnum a rdfs:Class . nmdc:SampDisStageEnum.DISSEMINATION a nmdc:SampDisStageEnum . nmdc:SampDisStageEnum.GROWTH_AND_REPRODUCTION a nmdc:SampDisStageEnum . nmdc:SampDisStageEnum.INFECTION a nmdc:SampDisStageEnum . nmdc:SampDisStageEnum.INOCULATION a nmdc:SampDisStageEnum . nmdc:SampDisStageEnum.OTHER a nmdc:SampDisStageEnum . nmdc:SampDisStageEnum.PENETRATION a nmdc:SampDisStageEnum . nmdc:DoorMatEnum a rdfs:Class . nmdc:DoorMatEnum.ALUMINUM a nmdc:DoorMatEnum . nmdc:DoorMatEnum.CELLULAR_PVC a nmdc:DoorMatEnum . nmdc:DoorMatEnum.ENGINEERED_PLASTIC a nmdc:DoorMatEnum . nmdc:DoorMatEnum.FIBERBOARD a nmdc:DoorMatEnum . nmdc:DoorMatEnum.FIBERGLASS a nmdc:DoorMatEnum . nmdc:DoorMatEnum.METAL a nmdc:DoorMatEnum . nmdc:DoorMatEnum.THERMOPLASTIC_ALLOY a nmdc:DoorMatEnum . nmdc:DoorMatEnum.VINYL a nmdc:DoorMatEnum . nmdc:DoorMatEnum.WOOD a nmdc:DoorMatEnum . nmdc:DoorMatEnum.WOOD_PLASTIC_COMPOSITE a nmdc:DoorMatEnum . nmdc:CalibrationTargetEnum a rdfs:Class . nmdc:CalibrationTargetEnum.MASS_CHARGE_RATIO a nmdc:CalibrationTargetEnum ; rdfs:label "m/z" . nmdc:CalibrationTargetEnum.RETENTION_INDEX a nmdc:CalibrationTargetEnum . nmdc:CalibrationTargetEnum.RETENTION_TIME a nmdc:CalibrationTargetEnum . nmdc:MetaproteomicsAnalysisCategoryEnum a rdfs:Class ; rdfs:comment "The category of metaproteomics analysis being performed." . nmdc:MetaproteomicsAnalysisCategoryEnum.IN_SILICO_METAGENOME a nmdc:MetaproteomicsAnalysisCategoryEnum ; rdfs:comment "A metaproteomics analysis that is matched to an in silico generated metagenome." . nmdc:MetaproteomicsAnalysisCategoryEnum.MATCHED_METAGENOME a nmdc:MetaproteomicsAnalysisCategoryEnum ; rdfs:comment "A metaproteomics analysis that is matched to a metagenome derived from the same biosample." . nmdc:LibrarySelectionEnum a rdfs:Class ; rdfs:comment "Library selection or enrichment method" ; rdfs:seeAlso . nmdc:LibrarySelectionEnum.MDA a nmdc:LibrarySelectionEnum ; rdfs:comment "Multiple displacement amplification" . nmdc:LibrarySelectionEnum.PCR a nmdc:LibrarySelectionEnum ; rdfs:comment "Source material was selected by designed primers" . nmdc:LibrarySelectionEnum.POLY_A a nmdc:LibrarySelectionEnum ; rdfs:comment "PolyA selection or enrichment for messenger RNA (mRNA)" . nmdc:LibrarySelectionEnum.RANDOM a nmdc:LibrarySelectionEnum ; rdfs:comment "Random selection by shearing or other method" . nmdc:LibrarySelectionEnum.OTHER a nmdc:LibrarySelectionEnum ; rdfs:comment "Other library enrichment, screening, or selection process (please include additional info in the design description)" . nmdc:LibrarySelectionEnum.SIZE_FRACTIONATION a nmdc:LibrarySelectionEnum ; rdfs:comment "Physical selection of size appropriate targets" . nmdc:TargetGeneOrLocusEnum a rdfs:Class . a nmdc:TargetGeneOrLocusEnum ; rdfs:comment "the small subunit of the bacterial/archaeal ribosome" . a nmdc:TargetGeneOrLocusEnum ; rdfs:comment "the small subunit of the eukaryotic ribosome" . a nmdc:TargetGeneOrLocusEnum ; rdfs:comment "the large subunit of the bacterial/archaeal ribosome" . a nmdc:TargetGeneOrLocusEnum ; rdfs:comment "the large subunit of the eukaryotic ribosome" . nmdc:TargetGeneOrLocusEnum.BACTERIAL_R_RNA_OPERON a nmdc:TargetGeneOrLocusEnum ; rdfs:comment "Bacterial ribosomal RNA operon (rrn): the transcript containing the 16S rRNA gene (SO:0001000), the 16S-23S intergenic spacer, and the 23S rRNA gene (SO:0001001), with the 5S rRNA gene (SO:0000652) typically further downstream. Recorded as the target for near-full-length operon amplicon sequencing; the example primers 8F and 2490R span 16S through 23S." . nmdc:TargetGeneOrLocusEnum.EUKARYOTIC_R_RNA_OPERON a nmdc:TargetGeneOrLocusEnum ; rdfs:comment "Eukaryotic ribosomal RNA cistron: the transcript containing the 18S rRNA gene (SO:0000407), internal transcribed spacer 1, the 5.8S rRNA gene (SO:0000375), internal transcribed spacer 2, and the 28S rRNA gene (SO:0000653). Recorded as the target for near-full-length operon amplicon sequencing, for example with primers 3NDF and 21R." . nmdc:ProtocolForEnum a rdfs:Class ; rdfs:comment "The permitted values for describing the type of planned process that a protocol describes." . nmdc:ProtocolForEnum.ANNOTATING_WORKFLOW a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.CHEMICAL_CONVERSION_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.CHROMATOGRAPHIC_SEPARATION_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.COLLECTING_BIOSAMPLES_FROM_SITE a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.CULTURING a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.DATA_EMITTER_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.DATA_GENERATION a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.DISSOLVING_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.EXTRACTION a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.FILTRATION_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.ISOLATION a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.LIBRARY_PREPARATION a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.MAGS_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.MASS_SPECTROMETRY a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.MATERIAL_PROCESSING a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METABOLOMICS_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METAGENOME_ANNOTATION a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METAGENOME_ASSEMBLY a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METAPROTEOMICS_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METATRANSCRIPTOME_ANNOTATION a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METATRANSCRIPTOME_ASSEMBLY a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.METATRANSCRIPTOME_EXPRESSION_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.MIXING_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.NOM_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.NUCLEOTIDE_SEQUENCING a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.PLANNED_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.POOLING a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.READ_BASED_TAXONOMY_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.READ_QC_ANALYSIS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.STORAGE_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.SUB_SAMPLING_PROCESS a nmdc:ProtocolForEnum . nmdc:ProtocolForEnum.WORKFLOW_EXECUTION a nmdc:ProtocolForEnum . nmdc:SampCollectPointEnum a rdfs:Class . nmdc:SampCollectPointEnum.DRILLING_RIG a nmdc:SampCollectPointEnum . nmdc:SampCollectPointEnum.OTHER a nmdc:SampCollectPointEnum . nmdc:SampCollectPointEnum.SEPARATOR a nmdc:SampCollectPointEnum . nmdc:SampCollectPointEnum.STORAGE_TANK a nmdc:SampCollectPointEnum . nmdc:SampCollectPointEnum.TEST_WELL a nmdc:SampCollectPointEnum . nmdc:SampCollectPointEnum.WELL a nmdc:SampCollectPointEnum . nmdc:SampCollectPointEnum.WELLHEAD a nmdc:SampCollectPointEnum . nmdc:DoorMoveEnum a rdfs:Class . nmdc:DoorMoveEnum.COLLAPSIBLE a nmdc:DoorMoveEnum . nmdc:DoorMoveEnum.FOLDING a nmdc:DoorMoveEnum . nmdc:DoorMoveEnum.REVOLVING a nmdc:DoorMoveEnum . nmdc:DoorMoveEnum.ROLLING_SHUTTER a nmdc:DoorMoveEnum . nmdc:DoorMoveEnum.SLIDING a nmdc:DoorMoveEnum . nmdc:DoorMoveEnum.SWINGING a nmdc:DoorMoveEnum . nmdc:IonizationSourceEnum a rdfs:Class . nmdc:IonizationSourceEnum.ATMOSPHERIC_PRESSURE_CHEMICAL_IONIZATION a nmdc:IonizationSourceEnum . nmdc:IonizationSourceEnum.ATMOSPHERIC_PRESSURE_PHOTO_IONIZATION a nmdc:IonizationSourceEnum . nmdc:IonizationSourceEnum.ELECTRON_IONIZATION a nmdc:IonizationSourceEnum . nmdc:IonizationSourceEnum.ELECTROSPRAY_IONIZATION a nmdc:IonizationSourceEnum . nmdc:IonizationSourceEnum.MATRIX_ASSISTED_LASER_DESORPTION_IONIZATION a nmdc:IonizationSourceEnum . nmdc:PloidyEnum a rdfs:Class ; rdfs:comment "The ploidy state of an organism's genome, drawn from the ploidy classes of the Phenotypic Quality Ontology (PATO)." . a nmdc:PloidyEnum ; rdfs:comment "Polyploid whose chromosome sets derive from two or more different species." . a nmdc:PloidyEnum ; rdfs:comment "A chromosome number that is not an exact multiple of the haploid set (extra or missing chromosomes)." . a nmdc:PloidyEnum ; rdfs:comment "Polyploid whose chromosome sets derive from a single species." . a nmdc:PloidyEnum ; rdfs:comment "Two homologous sets of chromosomes." . a nmdc:PloidyEnum ; rdfs:comment "A single set of homologous chromosomes." . a nmdc:PloidyEnum ; rdfs:comment "Six homologous sets of chromosomes." . a nmdc:PloidyEnum ; rdfs:comment "Five homologous sets of chromosomes." . a nmdc:PloidyEnum ; rdfs:comment "More than two homologous sets of chromosomes; use a more specific value when the level is known." . a nmdc:PloidyEnum ; rdfs:comment "Four homologous sets of chromosomes." . a nmdc:PloidyEnum ; rdfs:comment "Three homologous sets of chromosomes." . nmdc:SampCaptStatusEnum a rdfs:Class . nmdc:SampCaptStatusEnum.ACTIVE_SURVEILLANCE_IN_RESPONSE_TO_AN_OUTBREAK a nmdc:SampCaptStatusEnum . nmdc:SampCaptStatusEnum.ACTIVE_SURVEILLANCE_NOT_INITIATED_BY_AN_OUTBREAK a nmdc:SampCaptStatusEnum . nmdc:SampCaptStatusEnum.FARM_SAMPLE a nmdc:SampCaptStatusEnum . nmdc:SampCaptStatusEnum.MARKET_SAMPLE a nmdc:SampCaptStatusEnum . nmdc:SampCaptStatusEnum.OTHER a nmdc:SampCaptStatusEnum . nmdc:MassSpectrometryAcquisitionStrategyEnum a rdfs:Class . nmdc:MassSpectrometryAcquisitionStrategyEnum.DATA_DEPENDENT_ACQUISITION a nmdc:MassSpectrometryAcquisitionStrategyEnum ; rdfs:comment "Mass spectrometer data acquisition method wherein MSn spectra are triggered based on the m/z of precursor ions detected in the same run." . nmdc:MassSpectrometryAcquisitionStrategyEnum.DATA_INDEPENDENT_ACQUISITION a nmdc:MassSpectrometryAcquisitionStrategyEnum ; rdfs:comment "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented. Examples of such an approach include MS^E, AIF, and bbCID." . nmdc:MassSpectrometryAcquisitionStrategyEnum.FULL_SCAN_ONLY a nmdc:MassSpectrometryAcquisitionStrategyEnum ; rdfs:comment "Mass spectrometer data acquisition method wherein only MS1 data are acquired." . nmdc:SeqQualityCheckEnum a rdfs:Class . nmdc:SeqQualityCheckEnum.MANUALLY_EDITED a nmdc:SeqQualityCheckEnum . nmdc:SeqQualityCheckEnum.NONE a nmdc:SeqQualityCheckEnum . nmdc:TidalStageEnum a rdfs:Class . nmdc:TidalStageEnum.EBB_TIDE a nmdc:TidalStageEnum . nmdc:TidalStageEnum.FLOOD_TIDE a nmdc:TidalStageEnum . nmdc:TidalStageEnum.HIGH_TIDE a nmdc:TidalStageEnum . nmdc:TidalStageEnum.LOW_TIDE a nmdc:TidalStageEnum . nmdc:ShadingDeviceLocEnum a rdfs:Class . nmdc:ShadingDeviceLocEnum.EXTERIOR a nmdc:ShadingDeviceLocEnum . nmdc:ShadingDeviceLocEnum.INTERIOR a nmdc:ShadingDeviceLocEnum . nmdc:FileTypeEnum a rdfs:Class . nmdc:FileTypeEnum.ANALYSIS_TOOL_PARAMETER_FILE a nmdc:FileTypeEnum ; rdfs:comment "A configuration file used by a single computational software tool that stores settings that are specific to that tool." . nmdc:FileTypeEnum.ANNOTATION_AMINO_ACID_FASTA a nmdc:FileTypeEnum ; rdfs:comment "FASTA amino acid file for annotated proteins" . nmdc:FileTypeEnum.ANNOTATION_ENZYME_COMMISSION a nmdc:FileTypeEnum ; rdfs:comment "Tab delimited file for EC annotation" . nmdc:FileTypeEnum.ANNOTATION_INFO_FILE a nmdc:FileTypeEnum ; rdfs:comment "File containing annotation info" . nmdc:FileTypeEnum.ANNOTATION_KEGG_ORTHOLOGY a nmdc:FileTypeEnum ; rdfs:comment "Tab delimited file for KO annotation" . nmdc:FileTypeEnum.ANNOTATION_STATISTICS a nmdc:FileTypeEnum ; rdfs:comment "Annotation statistics report" . nmdc:FileTypeEnum.ASSEMBLY_AGP a nmdc:FileTypeEnum ; rdfs:comment "An AGP format file that describes the assembly" . nmdc:FileTypeEnum.ASSEMBLY_CONTIGS a nmdc:FileTypeEnum ; rdfs:comment "Final assembly contigs fasta" . nmdc:FileTypeEnum.ASSEMBLY_COVERAGE_BAM a nmdc:FileTypeEnum ; rdfs:comment "Sorted bam file of reads mapping back to the final assembly" . nmdc:FileTypeEnum.ASSEMBLY_COVERAGE_STATS a nmdc:FileTypeEnum ; rdfs:comment "Assembled contigs coverage information" . nmdc:FileTypeEnum.ASSEMBLY_INFO_FILE a nmdc:FileTypeEnum ; rdfs:comment "File containing assembly info" . nmdc:FileTypeEnum.ASSEMBLY_SCAFFOLDS a nmdc:FileTypeEnum ; rdfs:comment "Final assembly scaffolds fasta" . nmdc:FileTypeEnum.BAI_FILE a nmdc:FileTypeEnum ; rdfs:comment "An index file found in the same directory as the binary alignment map (BAM) file, a compressed binary version of a sequence alignment/map (SAM) file." . nmdc:FileTypeEnum.CATH_FUN_FAMS_FUNCTIONAL_FAMILIES_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with CATH FunFams" . nmdc:FileTypeEnum.CRT_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with CRT" . nmdc:FileTypeEnum.CENTRIFUGE_KRONA_PLOT a nmdc:FileTypeEnum ; rdfs:comment "Centrifuge krona plot HTML file" . nmdc:FileTypeEnum.CENTRIFUGE_TAXONOMIC_CLASSIFICATION a nmdc:FileTypeEnum ; rdfs:comment "Centrifuge output read classification file" . nmdc:FileTypeEnum.CENTRIFUGE_OUTPUT_REPORT_FILE a nmdc:FileTypeEnum ; rdfs:comment "Centrifuge output report file" . nmdc:FileTypeEnum.CHECK_M_STATISTICS a nmdc:FileTypeEnum ; rdfs:comment "CheckM statistics report" . nmdc:FileTypeEnum.CLUSTERS_OF_ORTHOLOGOUS_GROUPS_COG_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with COGs" . nmdc:FileTypeEnum.CONFIGURATION_TOML a nmdc:FileTypeEnum ; rdfs:comment "A configuration toml file used by various programs to store settings that are specific to their respective software." . nmdc:FileTypeEnum.CONTAMINANTS_AMINO_ACID_FASTA a nmdc:FileTypeEnum ; rdfs:comment "FASTA amino acid file for contaminant proteins commonly observed in proteomics data." . nmdc:FileTypeEnum.CONTIG_MAPPING_FILE a nmdc:FileTypeEnum ; rdfs:comment "Contig mappings between contigs and scaffolds" . nmdc:FileTypeEnum.CRISPR_TERMS a nmdc:FileTypeEnum ; rdfs:comment "Crispr Terms" . nmdc:FileTypeEnum.DIRECT_INFUSION_FT_ICR_MS_RAW_DATA a nmdc:FileTypeEnum ; rdfs:comment "Direct infusion Fourier transform ion cyclotron resonance mass spectrometry raw data" . nmdc:FileTypeEnum.DIRECT_INFUSION_FT_ICR_MS_ANALYSIS_RESULTS a nmdc:FileTypeEnum ; rdfs:comment "FT-ICR MS based molecular formula assignment results table" . nmdc:FileTypeEnum.DIRECT_INFUSION_FT_ICR_MS_QC_PLOTS a nmdc:FileTypeEnum ; rdfs:comment "Quality control plots for FT-ICR MS raw data acquired by direct infusion" . nmdc:FileTypeEnum.ERROR_CORRECTED_READS a nmdc:FileTypeEnum ; rdfs:comment "Error corrected reads fastq" . nmdc:FileTypeEnum.FILTERED_SEQUENCING_READS a nmdc:FileTypeEnum ; rdfs:comment "Reads QC result fastq (clean data)" . nmdc:FileTypeEnum.FUNCTIONAL_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with functional annotations" . nmdc:FileTypeEnum.GC_MS_METABOLOMICS_RESULTS a nmdc:FileTypeEnum ; rdfs:comment "GC-MS-based metabolite assignment results table" . nmdc:FileTypeEnum.GC_MS_RAW_DATA a nmdc:FileTypeEnum ; rdfs:comment "Gas chromatography-mass spectrometry raw data, full scan mode." . nmdc:FileTypeEnum.GOTTCHA_2_CLASSIFICATION_REPORT a nmdc:FileTypeEnum ; rdfs:comment "GOTTCHA2 classification report file" . nmdc:FileTypeEnum.GOTTCHA_2_KRONA_PLOT a nmdc:FileTypeEnum ; rdfs:comment "GOTTCHA2 krona plot HTML file" . nmdc:FileTypeEnum.GOTTCHA_2_REPORT_FULL a nmdc:FileTypeEnum ; rdfs:comment "GOTTCHA2 report file" . nmdc:FileTypeEnum.GTDBTK_ARCHAEAL_SUMMARY a nmdc:FileTypeEnum ; rdfs:comment "GTDBTK archaeal summary" . nmdc:FileTypeEnum.GTDBTK_BACTERIAL_SUMMARY a nmdc:FileTypeEnum ; rdfs:comment "GTDBTK bacterial summary" . nmdc:FileTypeEnum.GTDBTK_SUMMARY_JSON a nmdc:FileTypeEnum ; rdfs:comment "GTDBTK bacterial and archaeal summary in JSON format" ; rdfs:seeAlso . nmdc:FileTypeEnum.GE_NOMAD_AGGREGATED_CLASSIFICATION a nmdc:FileTypeEnum ; rdfs:comment "Tab separated file which combines the results from neural network-based classification and marker-based classification for virus and plasmid detection with geNomad." ; rdfs:seeAlso . nmdc:FileTypeEnum.GENE_PHYLOGENY_TSV a nmdc:FileTypeEnum ; rdfs:comment "Gene Phylogeny tsv" . nmdc:FileTypeEnum.GENEMARK_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with Genemark" . nmdc:FileTypeEnum.KO_EC_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with KO_EC" . nmdc:FileTypeEnum.KRAKEN_2_CLASSIFICATION_REPORT a nmdc:FileTypeEnum ; rdfs:comment "Kraken2 output report file" . nmdc:FileTypeEnum.KRAKEN_2_KRONA_PLOT a nmdc:FileTypeEnum ; rdfs:comment "Kraken2 krona plot HTML file" . nmdc:FileTypeEnum.KRAKEN_2_TAXONOMIC_CLASSIFICATION a nmdc:FileTypeEnum ; rdfs:comment "Kraken2 output read classification file" . nmdc:FileTypeEnum.LC_FT_ICR_MS_ANALYSIS_RESULTS a nmdc:FileTypeEnum ; rdfs:comment "LC FT-ICR MS-based molecular formula assignment results tables" . nmdc:FileTypeEnum.LC_FT_ICR_MS_QC_PLOTS a nmdc:FileTypeEnum ; rdfs:comment "Quality control plots for FT-ICR MS raw data acquired with liquid chromatography" . nmdc:FileTypeEnum.LC_FT_ICR_MS_RAW_DATA a nmdc:FileTypeEnum ; rdfs:comment "Fourier transform ion cyclotron resonance mass spectrometry raw data acquired with liquid chromatography" . nmdc:FileTypeEnum.LC_DDA_MS_MS_RAW_DATA a nmdc:FileTypeEnum ; rdfs:comment "Liquid chromatographically separated MS1 and Data-Dependent MS2 binary instrument file" . nmdc:FileTypeEnum.LC_MS_LIPIDOMICS_PROCESSED_DATA a nmdc:FileTypeEnum ; rdfs:comment "Processed data for the LC-MS-based lipidomics analysis in hdf5 format" . nmdc:FileTypeEnum.LC_MS_LIPIDOMICS_RESULTS a nmdc:FileTypeEnum ; rdfs:comment "LC-MS-based lipidomics analysis results table" . nmdc:FileTypeEnum.LC_MS_METABOLOMICS_PROCESSED_DATA a nmdc:FileTypeEnum ; rdfs:comment "Processed data for the LC-MS-based metabolomics analysis in hdf5 format" . nmdc:FileTypeEnum.LC_MS_METABOLOMICS_RESULTS a nmdc:FileTypeEnum ; rdfs:comment "LC-MS-based metabolite assignment results table" . nmdc:FileTypeEnum.MASS_SPECTROMETRY_REFERENCE_SPECTRAL_LIBRARY a nmdc:FileTypeEnum ; rdfs:comment "Spectral library used for mass spectrometry based metabolite identification" . nmdc:FileTypeEnum.METAGENOME_BINS_BARPLOT a nmdc:FileTypeEnum ; rdfs:comment "The Bar chart presents the pdf file containing the KO analysis results for metagenome bins" . nmdc:FileTypeEnum.METAGENOME_BINS_HEATMAP a nmdc:FileTypeEnum ; rdfs:comment "The Heatmap presents the pdf file containing the KO analysis results for metagenome bins" . nmdc:FileTypeEnum.METAGENOME_BINS_INFO_FILE a nmdc:FileTypeEnum ; rdfs:comment "File containing version information on the binning workflow" . nmdc:FileTypeEnum.METAGENOME_BINS_KRONA_PLOT a nmdc:FileTypeEnum ; rdfs:comment "The Krona plot presents the HTML file containing the KO analysis results for metagenome bins" . nmdc:FileTypeEnum.METAGENOME_HQMQ_BINS_COMPRESSION_FILE a nmdc:FileTypeEnum ; rdfs:comment "Compressed file containing high quality and medium quality metagenome bins and associated files" . nmdc:FileTypeEnum.METAGENOME_LQ_BINS_COMPRESSION_FILE a nmdc:FileTypeEnum ; rdfs:comment "Compressed file containing low quality metagenome bins and associated files" . nmdc:FileTypeEnum.METAGENOME_RAW_READ_1 a nmdc:FileTypeEnum ; rdfs:comment "Read 1 raw metagenome sequencing data, aka forward reads" . nmdc:FileTypeEnum.METAGENOME_RAW_READ_2 a nmdc:FileTypeEnum ; rdfs:comment "Read 2 raw metagenome sequencing data, aka reverse reads" . nmdc:FileTypeEnum.METAGENOME_RAW_READS a nmdc:FileTypeEnum ; rdfs:comment "Interleaved paired-end raw metagenome sequencing data" . nmdc:FileTypeEnum.METAPROTEOMICS_WORKFLOW_STATISTICS a nmdc:FileTypeEnum ; rdfs:comment "Aggregate workflow statistics file" . nmdc:FileTypeEnum.METATRANSCRIPTOME_EXPRESSION a nmdc:FileTypeEnum ; rdfs:comment "Metatranscriptome expression values and read counts for gene features predicted on contigs" . nmdc:FileTypeEnum.METATRANSCRIPTOME_EXPRESSION_INFO_FILE a nmdc:FileTypeEnum ; rdfs:comment "File containing version information on the expression workflow" . nmdc:FileTypeEnum.METATRANSCRIPTOME_EXPRESSION_INTERGENIC a nmdc:FileTypeEnum ; rdfs:comment "Metatranscriptome expression values and read counts for intergenic regions." . nmdc:FileTypeEnum.METATRANSCRIPTOME_RAW_READ_1 a nmdc:FileTypeEnum ; rdfs:comment "Read 1 raw metatranscriptome sequencing data, aka forward reads" . nmdc:FileTypeEnum.METATRANSCRIPTOME_RAW_READ_2 a nmdc:FileTypeEnum ; rdfs:comment "Read 2 raw metatranscriptome sequencing data, aka reverse reads" . nmdc:FileTypeEnum.METATRANSCRIPTOME_RAW_READS a nmdc:FileTypeEnum ; rdfs:comment "Interleaved paired-end raw metatranscriptome sequencing data" . nmdc:FileTypeEnum.MISC_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with Misc" . nmdc:FileTypeEnum.PAIRED_INTERLEAVED_RAW_SEQUENCING_DATA a nmdc:FileTypeEnum ; rdfs:comment "Paired-end reads with forward and reverse mates interleaved in a single file." ; rdfs:seeAlso . nmdc:FileTypeEnum.PEPTIDE_REPORT a nmdc:FileTypeEnum ; rdfs:comment "Filtered peptide report file" . nmdc:FileTypeEnum.PFAM_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with Pfam" . nmdc:FileTypeEnum.PLASMID_SUMMARY a nmdc:FileTypeEnum ; rdfs:comment "Tab separated file listing the plasmids found by geNomad." ; rdfs:seeAlso . nmdc:FileTypeEnum.PRODIGAL_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with Prodigal" . nmdc:FileTypeEnum.PRODUCT_NAMES a nmdc:FileTypeEnum ; rdfs:comment "Product names file" . nmdc:FileTypeEnum.PROTEIN_REPORT a nmdc:FileTypeEnum ; rdfs:comment "Filtered protein report file" . nmdc:FileTypeEnum.QC_STATISTICS a nmdc:FileTypeEnum ; rdfs:comment "Reads QC summary statistics" . nmdc:FileTypeEnum.QC_STATISTICS_EXTENDED a nmdc:FileTypeEnum ; rdfs:comment "Extended report including methods and results for read filtering" . nmdc:FileTypeEnum.QC_NON_R_RNA_R_1 a nmdc:FileTypeEnum ; rdfs:comment "QC removed rRNA reads (R1) fastq" . nmdc:FileTypeEnum.QC_NON_R_RNA_R_2 a nmdc:FileTypeEnum ; rdfs:comment "QC removed rRNA reads (R2) fastq" . nmdc:FileTypeEnum.RFAM_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with RFAM" . nmdc:FileTypeEnum.RAW_SEQUENCING_DATA_READ_1 a nmdc:FileTypeEnum ; rdfs:comment "Read 1 (forward) of a paired-end run, as a separate file." ; rdfs:seeAlso . nmdc:FileTypeEnum.RAW_SEQUENCING_DATA_READ_2 a nmdc:FileTypeEnum ; rdfs:comment "Read 2 (reverse) of a paired-end run, as a separate file." ; rdfs:seeAlso . nmdc:FileTypeEnum.READ_BASED_ANALYSIS_INFO_FILE a nmdc:FileTypeEnum ; rdfs:comment "File containing reads based analysis information" . nmdc:FileTypeEnum.READ_COUNT_AND_RPKM a nmdc:FileTypeEnum ; rdfs:comment "Annotation read count and RPKM per feature JSON" . nmdc:FileTypeEnum.READ_FILTERING_INFO_FILE a nmdc:FileTypeEnum ; rdfs:comment "File containing read filtering information" . nmdc:FileTypeEnum.REFERENCE_CALIBRATION_FILE a nmdc:FileTypeEnum ; rdfs:comment "A file that contains data used to calibrate a natural organic matter or metabolomics analysis." . nmdc:FileTypeEnum.SMART_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with SMART" . nmdc:FileTypeEnum.SRA_TOOLKIT_ACCESSIBLE_SEQUENCE_DATA a nmdc:FileTypeEnum ; rdfs:comment "Files that are available for download via SRA Toolkit by providing an INSDC accession" ; rdfs:seeAlso . nmdc:FileTypeEnum.SUPER_FAM_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with SUPERFam" . nmdc:FileTypeEnum.SCAFFOLD_LINEAGE_TSV a nmdc:FileTypeEnum ; rdfs:comment "phylogeny at the scaffold level" . nmdc:FileTypeEnum.SINGLE_M_CLUSTERED_REPORT a nmdc:FileTypeEnum ; rdfs:comment "SingleM taxonomic classification results, clustered by OTU" . nmdc:FileTypeEnum.SINGLE_M_KRONA_PLOT a nmdc:FileTypeEnum ; rdfs:comment "SingleM krona plot HTML file" . nmdc:FileTypeEnum.SINGLE_M_TAXONOMIC_CLASSIFICATION a nmdc:FileTypeEnum ; rdfs:comment "SingleM taxonomic classification file" . nmdc:FileTypeEnum.STRUCTURAL_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with structural annotations" . nmdc:FileTypeEnum.STRUCTURAL_ANNOTATION_STATS_JSON a nmdc:FileTypeEnum ; rdfs:comment "Structural annotations stats json" . nmdc:FileTypeEnum.TIGR_FAM_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with TIGRfam" . nmdc:FileTypeEnum.TMRNA_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with TMRNA" . nmdc:FileTypeEnum.TRNA_ANNOTATION_GFF a nmdc:FileTypeEnum ; rdfs:comment "GFF3 format file with TRNA" . nmdc:FileTypeEnum.UNFILTERED_METAPROTEOMICS_RESULTS a nmdc:FileTypeEnum ; rdfs:comment "MSGFjobs and MASIC output file" . nmdc:FileTypeEnum.UNPAIRED_RAW_SEQUENCING_DATA a nmdc:FileTypeEnum ; rdfs:comment "Reads from a single-end sequencing library (not forward/reverse pairs)." ; rdfs:seeAlso . nmdc:FileTypeEnum.VIRUS_SUMMARY a nmdc:FileTypeEnum ; rdfs:comment "Tab separated file listing the viruses found by geNomad." ; rdfs:seeAlso . nmdc:FileTypeEnum.WORKFLOW_OPERATION_SUMMARY a nmdc:FileTypeEnum ; rdfs:comment "A human readable record of analysis steps applied during an instance of a workflow operation." . nmdc:FileTypeEnum.R_RNA_FILTERED_SEQUENCING_READS a nmdc:FileTypeEnum ; rdfs:comment "File containing ribosomal reads from the read qc filtering step." . nmdc:WaterFeatTypeEnum a rdfs:Class . nmdc:WaterFeatTypeEnum.FOUNTAIN a nmdc:WaterFeatTypeEnum . nmdc:WaterFeatTypeEnum.POOL a nmdc:WaterFeatTypeEnum . nmdc:WaterFeatTypeEnum.STANDING_FEATURE a nmdc:WaterFeatTypeEnum . nmdc:WaterFeatTypeEnum.STREAM a nmdc:WaterFeatTypeEnum . nmdc:WaterFeatTypeEnum.WATERFALL a nmdc:WaterFeatTypeEnum . nmdc:WindowCoverEnum a rdfs:Class . nmdc:WindowCoverEnum.BLINDS a nmdc:WindowCoverEnum . nmdc:WindowCoverEnum.CURTAINS a nmdc:WindowCoverEnum . nmdc:WindowCoverEnum.NONE a nmdc:WindowCoverEnum . nmdc:CeilTypeEnum a rdfs:Class . nmdc:CeilTypeEnum.BARREL_SHAPED a nmdc:CeilTypeEnum . nmdc:CeilTypeEnum.CATHEDRAL a nmdc:CeilTypeEnum . nmdc:CeilTypeEnum.COFFERED a nmdc:CeilTypeEnum . nmdc:CeilTypeEnum.CONCAVE a nmdc:CeilTypeEnum . nmdc:CeilTypeEnum.COVE a nmdc:CeilTypeEnum . nmdc:CeilTypeEnum.DROPPED a nmdc:CeilTypeEnum . nmdc:CeilTypeEnum.STRETCHED a nmdc:CeilTypeEnum . nmdc:InstrumentModelEnum a rdfs:Class . nmdc:InstrumentModelEnum.AGILENT_7980_A a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.AGILENT_8890_A a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.EXPLORIS_21_T a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.EXPLORIS_240 a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.EXPLORIS_480 a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.LTQ_ORBITRAP_VELOS a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum ; rdfs:seeAlso . nmdc:InstrumentModelEnum.NOVASEQ_X a nmdc:InstrumentModelEnum ; rdfs:seeAlso . nmdc:InstrumentModelEnum.ORBITRAP_ECLIPSE_TRIBID a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.ORBITRAP_EXPLORIS_120 a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.ORBITRAP_FUSION_LUMOS a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.ORBITRAP_IDX_TRIBRID a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.ORBITRAP_IQX_TRIBRID a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.ORBITRAP_Q_EXACTIVE a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.REVIO a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.SEQUEL_I_IE a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.SOLARIX_12_T a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.SOLARIX_15_T a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.SOLARIX_7_T a nmdc:InstrumentModelEnum . nmdc:InstrumentModelEnum.VORTEX_GENIE_2 a nmdc:InstrumentModelEnum . nmdc:CalibrationStandardEnum a rdfs:Class . nmdc:CalibrationStandardEnum.ALKANES a nmdc:CalibrationStandardEnum . nmdc:CalibrationStandardEnum.FAMES a nmdc:CalibrationStandardEnum . nmdc:CalibrationStandardEnum.SRFA a nmdc:CalibrationStandardEnum ; rdfs:seeAlso . nmdc:DataCategoryEnum a rdfs:Class . nmdc:DataCategoryEnum.INSTRUMENT_DATA a nmdc:DataCategoryEnum ; rdfs:comment "Data generated by a DataGeneration PlannedProcess" . nmdc:DataCategoryEnum.PROCESSED_DATA a nmdc:DataCategoryEnum ; rdfs:comment "Data generated by a WorkflowExecution PlannedProcess" . nmdc:DataCategoryEnum.WORKFLOW_PARAMETER_DATA a nmdc:DataCategoryEnum ; rdfs:comment "Data used as input into a workflow providing workflow specification." . nmdc:HeatCoolTypeEnum a rdfs:Class . nmdc:HeatCoolTypeEnum.FORCED_AIR_SYSTEM a nmdc:HeatCoolTypeEnum . nmdc:HeatCoolTypeEnum.HEAT_PUMP a nmdc:HeatCoolTypeEnum . nmdc:HeatCoolTypeEnum.RADIANT_SYSTEM a nmdc:HeatCoolTypeEnum . nmdc:HeatCoolTypeEnum.STEAM_FORCED_HEAT a nmdc:HeatCoolTypeEnum . nmdc:HeatCoolTypeEnum.WOOD_STOVE a nmdc:HeatCoolTypeEnum . nmdc:RoomConnectedEnum a rdfs:Class . nmdc:RoomConnectedEnum.ATTIC a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.BATHROOM a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.CLOSET a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.CONFERENCE_ROOM a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.ELEVATOR a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.EXAMINING_ROOM a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.HALLWAY a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.KITCHEN a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.MAIL_ROOM a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.OFFICE a nmdc:RoomConnectedEnum . nmdc:RoomConnectedEnum.STAIRWELL a nmdc:RoomConnectedEnum . nmdc:SamplePortionEnum a rdfs:Class . nmdc:SamplePortionEnum.AQUEOUS_LAYER a nmdc:SamplePortionEnum ; rdfs:label "Aqueous layer" ; rdfs:comment "The portion of a mixture containing molecules dissolved in water" . nmdc:SamplePortionEnum.CHLOROFORM_LAYER a nmdc:SamplePortionEnum ; rdfs:label "Chloroform layer" ; rdfs:comment "The portion of a mixture containing molecules dissolved in chloroform" . nmdc:SamplePortionEnum.INTERLAYER a nmdc:SamplePortionEnum ; rdfs:label "Interlayer" ; rdfs:comment "The layer of material between liquid layers of a separated mixture" . nmdc:SamplePortionEnum.METHANOL_LAYER a nmdc:SamplePortionEnum ; rdfs:label "Methanol layer" ; rdfs:comment "The portion of a mixture containing molecules dissolved in methanol" . nmdc:SamplePortionEnum.ORGANIC_LAYER a nmdc:SamplePortionEnum ; rdfs:label "Organic layer" ; rdfs:comment "The portion of a mixture containing dissolved organic material" . nmdc:SamplePortionEnum.PELLET a nmdc:SamplePortionEnum . nmdc:SamplePortionEnum.SUPERNATANT a nmdc:SamplePortionEnum . nmdc:DoiProviderEnum a rdfs:Class ; rdfs:seeAlso nmdc:DoiProviderEnum , nmdc:ProcessingInstitutionEnum , nmdc:ExecutionResourceEnum . a nmdc:DoiProviderEnum ; rdfs:label "EDI" . a nmdc:DoiProviderEnum ; rdfs:label "ESS-DIVE" . a nmdc:DoiProviderEnum ; rdfs:label "Figshare" . nmdc:DoiProviderEnum.GSC a nmdc:DoiProviderEnum ; rdfs:label "GSC" . a nmdc:DoiProviderEnum ; rdfs:label "KBase" . nmdc:DoiProviderEnum.MASSIVE a nmdc:DoiProviderEnum ; rdfs:label "MassIVE" . a nmdc:DoiProviderEnum ; rdfs:label "OSTI" . nmdc:DoiProviderEnum.ZENODO a nmdc:DoiProviderEnum ; rdfs:label "Zenodo" . nmdc:DeposEnvEnum a rdfs:Class . nmdc:DeposEnvEnum.CONTINENTAL_AEOLIAN a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.CONTINENTAL_ALLUVIAL a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.CONTINENTAL_FLUVIAL a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.CONTINENTAL_LACUSTRINE a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.MARINE_DEEP a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.MARINE_REEF a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.MARINE_SHALLOW a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.OTHER_EVAPORITE a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.OTHER_GLACIAL a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.OTHER_VOLCANIC a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.TRANSITIONAL_BEACH a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.TRANSITIONAL_DELTAIC a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.TRANSITIONAL_LAGOONAL a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.TRANSITIONAL_LAKE a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.TRANSITIONAL_TIDAL a nmdc:DeposEnvEnum . nmdc:DeposEnvEnum.OTHER a nmdc:DeposEnvEnum . nmdc:WallConstTypeEnum a rdfs:Class . nmdc:WallConstTypeEnum.FIRE_RESISTIVE a nmdc:WallConstTypeEnum . nmdc:WallConstTypeEnum.FRAME_CONSTRUCTION a nmdc:WallConstTypeEnum . nmdc:WallConstTypeEnum.JOISTED_MASONRY a nmdc:WallConstTypeEnum . nmdc:WallConstTypeEnum.LIGHT_NONCOMBUSTIBLE a nmdc:WallConstTypeEnum . nmdc:WallConstTypeEnum.MASONRY_NONCOMBUSTIBLE a nmdc:WallConstTypeEnum . nmdc:WallConstTypeEnum.MODIFIED_FIRE_RESISTIVE a nmdc:WallConstTypeEnum . nmdc:BioticRelationshipEnum a rdfs:Class . nmdc:BioticRelationshipEnum.COMMENSALISM a nmdc:BioticRelationshipEnum . nmdc:BioticRelationshipEnum.FREE_LIVING a nmdc:BioticRelationshipEnum . nmdc:BioticRelationshipEnum.MUTUALISM a nmdc:BioticRelationshipEnum . nmdc:BioticRelationshipEnum.PARASITISM a nmdc:BioticRelationshipEnum . nmdc:BioticRelationshipEnum.SYMBIOTIC a nmdc:BioticRelationshipEnum . nmdc:SpecificEnum a rdfs:Class . nmdc:SpecificEnum.AS_BUILT a nmdc:SpecificEnum . nmdc:SpecificEnum.BID a nmdc:SpecificEnum . nmdc:SpecificEnum.CONSTRUCTION a nmdc:SpecificEnum . nmdc:SpecificEnum.DESIGN a nmdc:SpecificEnum . nmdc:SpecificEnum.OPERATION a nmdc:SpecificEnum . nmdc:SpecificEnum.PHOTOS a nmdc:SpecificEnum . nmdc:SrLithologyEnum a rdfs:Class . nmdc:SrLithologyEnum.BIOSILICIEOUS a nmdc:SrLithologyEnum . nmdc:SrLithologyEnum.CARBONATE a nmdc:SrLithologyEnum . nmdc:SrLithologyEnum.CLASTIC a nmdc:SrLithologyEnum . nmdc:SrLithologyEnum.COAL a nmdc:SrLithologyEnum . nmdc:SrLithologyEnum.OTHER a nmdc:SrLithologyEnum . nmdc:FloorStrucEnum a rdfs:Class . nmdc:FloorStrucEnum.BALCONY a nmdc:FloorStrucEnum . nmdc:FloorStrucEnum.CONCRETE a nmdc:FloorStrucEnum . nmdc:FloorStrucEnum.FLOATING_FLOOR a nmdc:FloorStrucEnum . nmdc:FloorStrucEnum.GLASS_FLOOR a nmdc:FloorStrucEnum . nmdc:FloorStrucEnum.RAISED_FLOOR a nmdc:FloorStrucEnum . nmdc:FloorStrucEnum.SPRUNG_FLOOR a nmdc:FloorStrucEnum . nmdc:FloorStrucEnum.WOOD_FRAMED a nmdc:FloorStrucEnum . nmdc:CeilStrucEnum a rdfs:Class . nmdc:CeilStrucEnum.CONCRETE a nmdc:CeilStrucEnum . nmdc:CeilStrucEnum.WOOD_FRAME a nmdc:CeilStrucEnum . nmdc:SampWeatherEnum a rdfs:Class . nmdc:SampWeatherEnum.CLEAR_SKY a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.CLOUDY a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.FOGGY a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.HAIL a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.RAIN a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.SLEET a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.SNOW a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.SUNNY a nmdc:SampWeatherEnum . nmdc:SampWeatherEnum.WINDY a nmdc:SampWeatherEnum . nmdc:ExtractionTargetEnum a rdfs:Class . nmdc:ExtractionTargetEnum.DNA a nmdc:ExtractionTargetEnum . nmdc:ExtractionTargetEnum.RNA a nmdc:ExtractionTargetEnum . nmdc:ExtractionTargetEnum.LIPID a nmdc:ExtractionTargetEnum . nmdc:ExtractionTargetEnum.METABOLITE a nmdc:ExtractionTargetEnum . nmdc:ExtractionTargetEnum.NATURAL_ORGANIC_MATTER a nmdc:ExtractionTargetEnum . nmdc:ExtractionTargetEnum.PROTEIN a nmdc:ExtractionTargetEnum . nmdc:DoorTypeMetalEnum a rdfs:Class . nmdc:DoorTypeMetalEnum.COLLAPSIBLE a nmdc:DoorTypeMetalEnum . nmdc:DoorTypeMetalEnum.CORRUGATED_STEEL a nmdc:DoorTypeMetalEnum . nmdc:DoorTypeMetalEnum.HOLLOW a nmdc:DoorTypeMetalEnum . nmdc:DoorTypeMetalEnum.ROLLING_SHUTTERS a nmdc:DoorTypeMetalEnum . nmdc:DoorTypeMetalEnum.STEEL_PLATE a nmdc:DoorTypeMetalEnum . nmdc:SubstanceRoleEnum a rdfs:Class . a nmdc:SubstanceRoleEnum ; rdfs:comment "Donates a proton or accepts an electron pair in a chemical reaction." . a nmdc:SubstanceRoleEnum ; rdfs:comment "Accepts a proton or donates an electron pair in a chemical reaction." . a nmdc:SubstanceRoleEnum ; rdfs:comment "Maintains the pH of the solution within a specific range to stabilize analytes or reactions." . nmdc:SubstanceRoleEnum.DERIVATIZING_AGENT a nmdc:SubstanceRoleEnum ; rdfs:comment "Chemically modifies analytes to improve detection or separation." . a nmdc:SubstanceRoleEnum ; rdfs:comment "Enzyme that catalyzes the hydrolysis of proteins and is used in mass spectrometry based proteomics" . nmdc:SubstanceRoleEnum.SOLUBILIZING_AGENT a nmdc:SubstanceRoleEnum . a nmdc:SubstanceRoleEnum ; rdfs:comment "Dissolves the sample or reagents to facilitate reactions or extraction." . a nmdc:SubstanceRoleEnum ; rdfs:comment "Reduces surface tension and aids in the solubilization of substances." . nmdc:WindowHorizPosEnum a rdfs:Class . nmdc:WindowHorizPosEnum.LEFT a nmdc:WindowHorizPosEnum . nmdc:WindowHorizPosEnum.MIDDLE a nmdc:WindowHorizPosEnum . nmdc:WindowHorizPosEnum.RIGHT a nmdc:WindowHorizPosEnum .