PREFIX nmrcv: PREFIX rdf: PREFIX rdfs: PREFIX xsd: a rdfs:Class ; rdfs:label "stoichiometry matrix"@en ; rdfs:comment "a stoichiometry matrix is an information content entity holding arrays of stoichiometric coefficients, each associated to a specific chemical reactions"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has part" ; rdfs:comment "a core relation that holds between a whole and its part"@en ; rdfs:range . a rdf:Property ; rdfs:label "has value specification" ; rdfs:comment "A relation between an information content entity and a value specification that specifies its value." ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "participates in"@en ; rdfs:comment "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "is about"@en ; rdfs:comment "is_about is a (currently) primitive relation that relates an information artifact to an entity."@en ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "is_proxy_for"@en ; rdfs:comment "A relation between continuant instances c1 and c2 where within an experiment/ protocol application, measurement of c1 is used to determine what a measurement of c2 would be."@en ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "is concretized as"@en ; rdfs:comment "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."@en ; rdfs:domain ; rdfs:range . a rdfs:Class ; rdfs:label "Euteleostomi" ; rdfs:subClassOf . a rdf:Property ; rdfs:label "derives from"@en ; rdfs:comment "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "has_role"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "has function"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . nmrcv:NMR:1000230 a rdfs:Class ; rdfs:label "Bruker acquisition parameter file"@en ; rdfs:subClassOf nmrcv:NMR:1002006 . a rdfs:Class ; rdfs:label "stable isotope resolved metabolomics study" ; rdfs:comment """stable isotope resolved metabolomics study is a kind of investigation which uses non-radioactive isotope for labeling compounds which are precursors in key metabolic reaction. These studies therefore allow deciphering reaction and understanding the fluxes in cells. Tracer based pathway discovery study is a specific type of fluxomics study which aims at discovery new metabolic routes and their associated signature metabolites by using isotopically labeled tracers"""@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "preceded by"@en ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "precedes"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "has_specified_output"@en ; rdfs:comment "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en ; rdfs:domain ; rdfs:range , , ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "achieves_planned_objective" ; rdfs:comment "This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process." ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "has_specified_input"@en ; rdfs:comment "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en ; rdfs:domain ; rdfs:range , , ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "realizes"@en ; rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "has participant"@en ; rdfs:comment "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en ; rdfs:domain ; rdfs:range . nmrcv:NMR:1400238 a rdfs:Class ; rdfs:label "Varian VXR" ; rdfs:subClassOf nmrcv:NMR:1400234 . nmrcv:NMR:1000393 a rdfs:Class ; rdfs:label "Siemens AG"@en ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000360 a rdfs:Class ; rdfs:label "intelligent bucketing"@en ; rdfs:subClassOf nmrcv:NMR:1400138 . nmrcv:NMR:1000241 a rdfs:Class ; rdfs:label "Mat NMR 3 software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "cross over design"@en ; rdfs:comment "a repeated measure design which ensures that experimental units receive, in sequence, the treatment (or the control), and then, after a specified time interval (aka *wash-out periods*), switch to the control (or treatment). In this design, subjects (patients in human context) serve as their own controls, and randomization may be used to determine the ordering which a subject receives the treatment and control"@en ; rdfs:subClassOf . nmrcv:NMR:1400227 a rdfs:Class ; rdfs:label "JNM-ECX Series FT NMR instrument" ; rdfs:comment "The JNM-ECX series is an FT NMR spectrometer developed making full use of the latest digital and high frequency technology. This high performance, sophisticated spectrometer designed to take advantage of high field magnet development to include 1GHz. Innovative features to support not only the conventional NMR applications such as structural analysis of molecules and evaluation of materials but also future progress of science and technologies including research for development of new drugs, postgenome research and development of new materials." ; rdfs:subClassOf nmrcv:NMR:1400226 . nmrcv:NMR:1000139 a rdfs:Class ; rdfs:label "sparky software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . a rdfs:Class ; rdfs:label "datum label"@en ; rdfs:comment "A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label"@en ; rdfs:subClassOf . nmrcv:NMR:1000231 a rdfs:Class ; rdfs:label "peak feature" ; rdfs:subClassOf nmrcv:NMR:1000172 . a rdfs:Class ; rdfs:label "minute" ; rdfs:comment "A time unit which is equal to 60 seconds." ; rdfs:subClassOf . nmrcv:NMR:1001459 a rdfs:Class ; rdfs:label "data file format" ; rdfs:comment "Format of data files." ; rdfs:subClassOf nmrcv:NMR:1000011 . nmrcv:NMR:1000354 a rdfs:Class ; rdfs:label "NMR software version"@en ; rdfs:subClassOf nmrcv:NMR:1000353 . nmrcv:NMR:1000295 a rdfs:Class ; rdfs:label "Wilmad economy tube"@en ; rdfs:subClassOf nmrcv:NMR:1000278 . nmrcv:NMR:1400025 a rdfs:Class ; rdfs:label "sample temperature in magnet" ; rdfs:comment "def: The temperature of an NMR sample whilst in the magnet of an NMR instrument." ; rdfs:subClassOf nmrcv:NMR:1400262 . a rdfs:Class ; rdfs:label "13cflux2"@en ; rdfs:comment "c13Fluc2 is a software suite of applications for the detailed quantification of intracellular (quasi) steady-state fluxes as explored by 13C-based metabolic flux analysis. The tool is developed and maintained by W. Wiechert at the Institute of Bio- and Geosciences, IBG-1: Biotechnology and JARA High Performance Computing, Forschungszentrum, Julich GmbH, 52428 Julich, Germany."@en ; rdfs:subClassOf . nmrcv:NMR:1000020 a rdfs:Class ; rdfs:label "post buffer pH"@en ; rdfs:subClassOf nmrcv:NMR:1002011 . a rdfs:Class ; rdfs:label "13C5-15N2-glutamine"@en ; rdfs:comment "A non-radioactive, glutamine molecule in which 5 carbons are substituted with stable carbon 13 (13C) isotope and both glutamin nitrogen atoms are substituted with 15N ones, with potential imaging application or fluxomics studies."@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "is_specified_output_of"@en ; rdfs:comment "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . nmrcv:NMR:1000045 a rdfs:Class ; rdfs:label "homonuclear decoupling"@en ; rdfs:subClassOf nmrcv:NMR:1000044 . a rdfs:Class ; rdfs:label "material processing"@en ; rdfs:comment "A planned process which results in physical changes in a specified input material"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "two-dimensional nuclear magnetic resonance spectroscopy" ; rdfs:comment "An NMR experiment in which a second frequency dimension is employed to disperse the signals and reveal correlations between interacting nuclei." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "function"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "concretizes"@en ; rdfs:comment "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."@en ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "function of"@en ; rdfs:comment "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "realized in"@en ; rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; rdfs:domain ; rdfs:range , , , . a rdfs:Class ; rdfs:label "creatinine" ; rdfs:comment "A lactam obtained by formal cyclocondensation of creatine. It is a metabolite of creatine." ; rdfs:subClassOf . nmrcv:NMR:1000034 a rdfs:Class ; rdfs:label "keyword" ; rdfs:subClassOf nmrcv:NMR:1400117 . nmrcv:NMR:1000332 a rdfs:Class ; rdfs:label "presat water suppression"@en ; rdfs:subClassOf nmrcv:NMR:1400066 . a rdfs:Class ; rdfs:label "protium atom" ; rdfs:comment "The stable isotope of hydrogen with relative atomic mass 1.007825 and a natural abundance of 99.9885 atom percent (from Greek pirhoomegatauomicronsigma, first)." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nuclear Overhauser enhancement spectroscopy" ; rdfs:comment "A type of homonuclear NMR spectroscopy based on the nuclear Overhauser enhancement effect in which correlations are seen between nuclei that are spatially proximate within a molecule (\\leq 6 \\AA apart)." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "realizable entity"@en ; rdfs:comment "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en ; rdfs:subClassOf . nmrcv:NMR:1000157 a rdfs:Class ; rdfs:label "tecmag instrument model"@en ; rdfs:subClassOf nmrcv:NMR:1000031 . nmrcv:NMR:1000326 a rdfs:Class ; rdfs:label "5mm inverse detection cryoprobe"@en ; rdfs:subClassOf nmrcv:NMR:1000236 , nmrcv:NMR:1000324 , nmrcv:NMR:1000325 , nmrcv:NMR:1400243 . a rdfs:Class ; rdfs:label "isotopically non-stationary 13C-metabolic flux analysis"@en ; rdfs:comment "Isotopically non-stationary MFA (INST-MFA) is a metabolic flux analysis which provides an approach to circumvent limitations from other methods through computational analysis of metabolite labeling patterns obtained during the transient labeling period prior to isotopic steady state (Wiechert and Noh, 2005). This approach offers several advantages over steady-state MFA, including shorter experimental times and the ability to determine fluxes with increased precision (Nöh and Wiechert, 2011; Young and Walther, 2008)."@en ; rdfs:subClassOf . nmrcv:NMR:1400068 a rdfs:Class ; rdfs:label "window function for apodization" ; rdfs:comment "A function applied to a FID to increase the signal-to-noise ratio or the resolution." ; rdfs:subClassOf nmrcv:NMR:1400101 . a rdfs:Class ; rdfs:label "isotopic tracer"@en ; rdfs:comment "an isotopic tracer is a molecular entity whose atoms may have entirely or partially replaced with isotopes of the normally occuring element and which can be distinguished from naturally occuring molecular entity through mass analysis or nucleic magnetic resonance analysis."@en ; rdfs:subClassOf , . a rdfs:Class ; rdfs:label "hydrogensulfite" ; rdfs:subClassOf . nmrcv:NMR:1400195 a rdfs:Class ; rdfs:label "flow high resolution probe" ; rdfs:comment """def: Hyphenated analytical techniques combining mass spectrometry and chromatography are well-established laboratory tools. The combination of chromatography and NMR has also made its way into the analytical laboratory. Further developments even combine all three techniques into an LC-NMR/NMR-MS system. The use of solid phase extraction provides an efficient interface between chromatography and NMR with demands for special type of flow probes. defprov: Bruker website synonym: flow HR-probe""" ; rdfs:subClassOf nmrcv:NMR:1400223 . nmrcv:NMR:1400123 a rdfs:Class ; rdfs:label "processing parameter file" ; rdfs:comment "def: A reference to a file of data pre-processing parameters produced by the machine." ; rdfs:subClassOf nmrcv:NMR:1400267 . nmrcv:NMR:1000529 a rdfs:Class ; rdfs:label "instrument serial number" ; rdfs:comment "Serial Number of the instrument." ; rdfs:subClassOf nmrcv:NMR:1000496 . nmrcv:NMR:1000365 a rdfs:Class ; rdfs:label "bucket fusioning"@de ; rdfs:subClassOf nmrcv:NMR:1000362 . nmrcv:NMR:1400300 a rdfs:Class ; rdfs:label "JCAMP DX format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "cell layer enzymatic digestion" ; rdfs:comment "cell layer enzymatic digestion is a material component separation process which uses an enzyme, usually a protease, to lyse the bonds between cultured cells and their substrates (usually a microplate, which may be coated with anchoring material such as collagen). Once the digestion is complete, cell layers can be harvested with minimal damage to the cells themselves."@en ; rdfs:subClassOf . nmrcv:NMR:1000112 a rdfs:Class ; rdfs:label "perfect echo watergate pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1400037 . nmrcv:NMR:1000197 a rdfs:Class ; rdfs:label "triplet of douplets"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . nmrcv:NMR:1000377 a rdfs:Class ; rdfs:label "LC-NMR/MS instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1400270 a rdfs:Class ; rdfs:label "Acorn NMR Inc" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "quadrupolar Carr-Purcell-Meiboom-Gill pulse sequence" ; rdfs:comment "A pulse sequence which is applied during nuclear magnetic resonance spectroscopy of quadrupolar nuclei, to measure spin--spin (T2) relaxation times. In the solid state, the sequence is used to achieve sensitivity enhancement for nuclei with low gyromagnetic ratios. For the pulse sequence see J. Phys. Chem. A, (1997), 101, pg 8597." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "return to database/resource"@en ; rdfs:comment "This requirement indicates that the requestor must return derived/enriched data to the database/resource." ; rdfs:subClassOf . nmrcv:NMR:1000343 a rdfs:Class ; rdfs:label "data encoding parameter"@en ; rdfs:subClassOf nmrcv:NMR:1400101 . nmrcv:NMR:1001923 a rdfs:Class ; rdfs:label "external reference keyword" ; rdfs:comment "Free text attribute that can enrich the information about an entity." ; rdfs:subClassOf nmrcv:NMR:1000034 . a rdfs:Class ; rdfs:label "untargeted metabolite profiling"@en ; rdfs:comment "a kind of assay which attempts to identify and measure relative concentration of all possible metabolites present in a extract derived from a specimen using techniques such as gas chromatography mass spectrometry, liquid chromatography mass spectrometry, NMR spectroscopy."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolic flux"@en ; rdfs:comment """Flux, or metabolic flux is the rate of turnover of molecules through a metabolic pathway. Flux is regulated by the enzymes involved in a pathway. Within cells, regulation of flux is vital for all metabolic pathways to regulate the metabolic pathway's activity under different conditions. Flux is therefore of great interest in metabolic network modelling, where it is analysed via flux balance analysis. amount per unit of time maybe normalized by protein content"""@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has measurement value"@en ; rdfs:domain ; rdfs:range xsd:double . a rdf:Property ; rdfs:label "has measurement unit label"@en ; rdfs:range , , ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "is quality measurement of"@en ; rdfs:comment """m is a quality measurement of q at t when q is a quality there is a measurement process p that has specified output m, a measurement datum, that is about q"""@en ; rdfs:domain ; rdfs:range , ; rdfs:subPropertyOf . nmrcv:NMR:1000179 a rdfs:Class ; rdfs:label "center of bin on x-axis"@en ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1000052 a rdfs:Class ; rdfs:label "suspension" ; rdfs:comment "State if the sample is in suspension form." ; rdfs:subClassOf nmrcv:NMR:1000049 . nmrcv:NMR:1000194 a rdfs:Class ; rdfs:label "singlet feature"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . nmrcv:NMR:1000067 a rdfs:Class ; rdfs:label "FID zero filling"@en ; rdfs:subClassOf nmrcv:NMR:1400041 . nmrcv:NMR:1000123 a rdfs:Class ; rdfs:label "homonuclear exchange spectroscopy spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . nmrcv:NMR:1000287 a rdfs:Class ; rdfs:label "1mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . nmrcv:NMR:1400098 a rdfs:Class ; rdfs:label "line sharpening" ; rdfs:comment """line sharpening is a data transformation process inverse to that of line broadening, which aims to improve the quality of the signal being acquired and being analyzed in order to obtain clear, sharp peaks, in turn making interpretation easier. Line sharpening can be optimized during data acquisition or performed during data analysis by applied digital processing and filtering.""" ; rdfs:subClassOf nmrcv:NMR:1000021 . a rdfs:Class ; rdfs:label "dilution factor"@en ; rdfs:comment "dilution factor is a measurement data item which indicates in percentage the level of purity of a material in the context of dilution such as a dilution series."@en ; rdfs:subClassOf . nmrcv:NMR:1400126 a rdfs:Class ; rdfs:label "NMR quality check descriptor" ; rdfs:comment """def: A result of an NMR quality check. synonym: NMR quality check result""" ; rdfs:subClassOf nmrcv:NMR:1000172 . nmrcv:NMR:1400250 a rdfs:Class ; rdfs:label "tecmag NMR instrument" ; rdfs:subClassOf nmrcv:NMR:1400059 . a rdfs:Class ; rdfs:label "rule"@en ; rdfs:comment "a rule is an executable which guides, defines, restricts actions"@en ; rdfs:subClassOf . nmrcv:NMR:1000162 a rdfs:Class ; rdfs:label "NMR acquisition computer operating system"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000403 a rdfs:Class ; rdfs:label "Agilent Au 400 (DDR2 Console)"@en ; rdfs:subClassOf nmrcv:NMR:1000400 . nmrcv:NMR:1400011 a rdfs:Class ; rdfs:label "cardinal part of NMR instrument" ; rdfs:comment """def: A part of an NMR instrument which is cardinally important and hence obligatory and compulsatory for the proper intended function of the instrument. synonym: cardinal part of NMR instrument""" ; rdfs:subClassOf nmrcv:NMR:1000463 . nmrcv:NMR:1000048 a rdfs:Class ; rdfs:label "gas" ; rdfs:comment "State if the sample is in gaseous form." ; rdfs:subClassOf nmrcv:NMR:1000003 . a rdfs:Class ; rdfs:label "HPLC instrument"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "manufactured by"@en ; rdfs:comment "A relation associating a product to its manufacturer."@en ; rdfs:range , . a rdfs:Class ; rdfs:label "relational quality"@en ; rdfs:comment "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])"@en ; rdfs:subClassOf . nmrcv:NMR:1400281 a rdfs:Class ; rdfs:label "indirect detection probe" ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1400130 a rdfs:Class ; rdfs:label "magic angle spinning rotor" ; rdfs:comment """defneed synonym: MAS rotor""" ; rdfs:subClassOf nmrcv:NMR:1400129 . nmrcv:NMR:1400292 a rdfs:Class ; rdfs:label "JEOL AL95 format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "measurement device" ; rdfs:comment "A device in which a measure function inheres." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "time measurement datum"@en ; rdfs:comment "A scalar measurement datum that is the result of measuring a temporal interval"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "is duration of"@en ; rdfs:comment "relates a process to a time-measurement-datum that represents the duration of the process"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdfs:Class ; rdfs:label "value specification" ; rdfs:comment "An information content entity that specifies a value within a classification scheme or on a quantitative scale." ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has specified value"@en ; rdfs:comment "A relation between a value specification and a literal." ; rdfs:domain ; rdfs:range . a rdf:Property ; rdfs:label "has specified numeric value" ; rdfs:comment "A relation between a value specification and a number that quantifies it." ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "specifies value of" ; rdfs:comment "A relation between a value specification and an entity which the specification is about." ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . nmrcv:NMR:1000151 a rdfs:Class ; rdfs:label "back calculation of first points by linear-prediction"@en ; rdfs:subClassOf nmrcv:NMR:1000068 . nmrcv:NMR:1400313 a rdfs:Class ; rdfs:label "Perkin Elmer" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1002013 a rdfs:Class ; rdfs:label "chemical shift reference" ; rdfs:comment "Chemical shift reference is a run attribute to designate the parts-per-million value of the peak used to reference a spectrum. It points to a fix chemical shift number, for examples 0 ppm for DSS or TSP. It can also have a calculated concentration, for examples 0.1 mM." ; rdfs:subClassOf nmrcv:NMR:1400034 . nmrcv:NMR:1400162 a rdfs:Class ; rdfs:label "2D spectrum" ; rdfs:comment """defneed synonym: 2D spectrum""" ; rdfs:subClassOf nmrcv:NMR:1000117 . a rdfs:Class ; rdfs:label "publication moratorium" ; rdfs:comment "This requirement indicates that requestor agrees not to publish results of studies until a specific date" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "carbon-13 atom" ; rdfs:subClassOf . nmrcv:NMR:1400137 a rdfs:Class ; rdfs:label "peak picking" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000015 . nmrcv:NMR:1400246 a rdfs:Class ; rdfs:label "tecmag console" ; rdfs:subClassOf nmrcv:NMR:1400015 . nmrcv:NMR:1000336 a rdfs:Class ; rdfs:label "byte format"@en ; rdfs:subClassOf nmrcv:NMR:1000334 . nmrcv:NMR:1000242 a rdfs:Class ; rdfs:label "NMRLab software"@en ; rdfs:subClassOf . nmrcv:NMR:1000092 a rdfs:Class ; rdfs:label "NMRLab software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000409 a rdfs:Class ; rdfs:label "complex128 Integer"@en ; rdfs:comment "This byte format uses a consecutive array of two 64bit long integer numbers to represent the real and imaginary part of the complex values (2x64bits => 2x8bytes => 2 longs) for the FID datatype." ; rdfs:subClassOf nmrcv:NMR:1000336 . nmrcv:NMR:1400302 a rdfs:Class ; rdfs:label "Nuts format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000168 a rdfs:Class ; rdfs:label "NMR acquisition software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000315 a rdfs:Class ; rdfs:label "proc2s"@en ; rdfs:subClassOf nmrcv:NMR:1000250 . a rdfs:Class ; rdfs:label "liquid chromatography-mass spectrometry" ; rdfs:comment "A method where a sample mixture is first separated by liquid chromatography before being converted into ions which are characterised by their mass-to-charge ratio and relative abundance." ; rdfs:subClassOf . nmrcv:NMR:1000220 a rdfs:Class ; rdfs:label "2D pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1400037 . nmrcv:NMR:1000434 a rdfs:Class ; rdfs:label "DRX 600 instrument"@de ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1000252 a rdfs:Class ; rdfs:label "Varian processing parameter file"@en ; rdfs:subClassOf nmrcv:NMR:1400123 . nmrcv:NMR:1000358 a rdfs:Class ; rdfs:label "variable size bucketing"@en ; rdfs:subClassOf nmrcv:NMR:1400138 . nmrcv:NMR:1000319 a rdfs:Class ; rdfs:label "1R file"@en ; rdfs:subClassOf nmrcv:NMR:1000318 . a rdfs:Class ; rdfs:label "isodesign"@en ; rdfs:comment """IsoDesign, a software that enables these parameters to be maximized by optimizing the isotopic composition of the label input. It can be applied to (13) C-MFA investigations using a broad panel of analytical tools (MS, MS/MS, (1) H NMR, (13) C NMR, etc.) individually or in combination. It includes a visualization module to intuitively select the optimal label input depending on the biological question to be addressed. The software is available from: http://metasys.insa-toulouse.fr/software/isodes/"""@en ; rdfs:subClassOf . nmrcv:NMR:1000031 a rdfs:Class ; rdfs:label "NMR instrument model" ; rdfs:comment "Instrument model name not including the vendor's name." ; rdfs:subClassOf nmrcv:NMR:1000496 . nmrcv:NMR:1000412 a rdfs:Class ; rdfs:label "InChi"@en ; rdfs:subClassOf nmrcv:NMR:1000418 . nmrcv:NMR:1400140 a rdfs:Class ; rdfs:label "presat pulse sequence" ; rdfs:comment """defneed synonym: presaturation""" ; rdfs:subClassOf nmrcv:NMR:1400037 . a rdfs:Class ; rdfs:label "J-spectroscopy" ; rdfs:comment "A type of homonuclear proton--proton) NMR spectroscopy where chemical shift and J-coupling information are separated onto different frequency axes." ; rdfs:subClassOf . nmrcv:NMR:1000140 a rdfs:Class ; rdfs:label "CARA software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . a rdfs:Class ; rdfs:label "INCA"@en ; rdfs:comment """INCA: a computational platform for isotopically non-stationary metabolic flux analysis, Jamey D. Young. Bioinformatics, first published online January 11, 2014. INCA is a software package that can perform both steady-state metabolic flux analysis and isotopically non-stationary metabolic flux analysis. The software provides a framework for comprehensive analysis of metabolic networks using mass balances and elementary metabolite unit balances. The generation of balance equations and their computational solution is completely automated and can be performed on networks of arbitrary complexity."""@en ; rdfs:subClassOf , . a rdf:Property ; rdfs:label "is_specified_input_of"@en ; rdfs:comment "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdfs:Class ; rdfs:label "Euarchontoglires" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "study intervention" ; rdfs:comment "the part of the execution of an intervention design study which is varied between two or more subjects in the study" ; rdfs:subClassOf . nmrcv:NMR:1400205 a rdfs:Class ; rdfs:label "Bruker AutoClean" ; rdfs:comment """def: In today's fast-paced research environment, NMR tubes are often used once and discarded, creating needless waste. With the Bruker BioSpin Autoclean™ system you can now recycle 5mm, 3mm, or 5mm/3mm step-down (Wilmad 520-1B) NMR tubes. AutoClean NMR Tube Washing System is a simple way to recoup the substantial investment your organization makes in quality NMR tubes, and cut back on needless waste material. defprov: Bruker website""" ; rdfs:subClassOf nmrcv:NMR:1400204 . nmrcv:NMR:1000285 a rdfs:Class ; rdfs:label "3mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . nmrcv:NMR:1000172 a rdfs:Class ; rdfs:label "NMR spectrum descriptor"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "silicon-29 atom" ; rdfs:comment "The stable isotope of silicon with relative atomic mass 28.9764947, 4.683 atom percent natural abundancy, and nuclear spin (1)/2." ; rdfs:subClassOf . nmrcv:NMR:1400220 a rdfs:Class ; rdfs:label "AUREMOL software" ; rdfs:subClassOf nmrcv:NMR:1400214 . nmrcv:NMR:1000308 a rdfs:Class ; rdfs:label "shifted sine bell window function"@en ; rdfs:comment """Functional form: sp(x_i) = sin( (pi*off + pi*(end-off)*i/(size-1) )**pow Parameters: * data Array of spectral data. * start Start of Sine-Bell as percent of vector (0.0 -> 1.0) * end End of Sine-Bell as percent of vector (0.0 -> 1.0 ) * pow Power of Sine-Bell * inv Set True for inverse apodization.""" ; rdfs:subClassOf nmrcv:NMR:1400071 . a rdfs:Class ; rdfs:label "study design"@en ; rdfs:comment "A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution." ; rdfs:subClassOf . nmrcv:NMR:1000146 a rdfs:Class ; rdfs:label "Lorenzian estimated concentration"@en ; rdfs:comment "https://docs.google.com/spreadsheets/d/1egsLQWoQuCxAYPr9MIo-F0A5K9RCbJSC8yWZyYq_fiQ/edit?usp=sharing" ; rdfs:subClassOf nmrcv:NMR:1000137 . nmrcv:NMR:1000369 a rdfs:Class ; rdfs:label "JNM-ECZR Series FT NMR instrument"@en ; rdfs:comment """JNM-ECZR series is a new system that fully incorporates the latest digital and high frequency technologies. Improved reliability and a more compact size make possible by incorporating more advanced integrated circuits, it supports even greater expandability options than current models for multi-channel operation, high power amplifiers and other accessories. The bus line for control of attachments has been upgraded to high speed and enables highly accurate and rapid control. 400 MHz - 1 GHz""" ; rdfs:subClassOf nmrcv:NMR:1400226 . nmrcv:NMR:1400120 a rdfs:Class ; rdfs:label "pulse sequence literature reference" ; rdfs:comment "def: A reference to a description of a pulse sequence in the literature." ; rdfs:subClassOf nmrcv:NMR:1000878 . a rdfs:Class ; rdfs:label "two-dimensional heteronuclear single quantum coherence-nuclear Overhauser effect spectroscopy" ; rdfs:comment "A 2D NMR experiment which correlates the chemical shifts of spatially proximate protons with the chemical shifts of all (of one type of) their covalently bound heteronuclei." ; rdfs:subClassOf . nmrcv:NMR:1400296 a rdfs:Class ; rdfs:label "TecMag format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000274 a rdfs:Class ; rdfs:label "JEOL ECA magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . nmrcv:NMR:1000265 a rdfs:Class ; rdfs:label "ERVA-based bucketing"@en ; rdfs:subClassOf nmrcv:NMR:1400138 . nmrcv:NMR:1400188 a rdfs:Class ; rdfs:label "Ultrastabilized" ; rdfs:subClassOf nmrcv:NMR:1400186 . a rdfs:Class ; rdfs:label "object"@en ; rdfs:subClassOf . nmrcv:NMR:1000089 a rdfs:Class ; rdfs:label "rNMR software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000934 a rdfs:Class ; rdfs:label "gene name" ; rdfs:comment "Name of the gene from which the protein is translated." ; rdfs:subClassOf nmrcv:NMR:1000884 . a rdfs:Class ; rdfs:label "rate measurement datum" ; rdfs:comment "A scalar measurement datum that represents the number of events occuring over a time interval" ; rdfs:subClassOf . nmrcv:NMR:1400199 a rdfs:Class ; rdfs:label "Metabolic Profiler instrument" ; rdfs:comment "For metabolism studies, and analysis of complex mixtures." ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1400309 a rdfs:Class ; rdfs:label "Agilent Technologies" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "boron-11" ; rdfs:comment "The stable isotope of boron with relative atomic mass 11.009306, 80.1 atom percent natural abundance and nuclear spin 3/2." ; rdfs:subClassOf . nmrcv:NMR:1000865 a rdfs:Class ; rdfs:label "empirical formula" ; rdfs:comment "A chemical formula which expresses the proportions of the elements present in a substance." ; rdfs:subClassOf nmrcv:NMR:1000864 . nmrcv:NMR:1000078 a rdfs:Class ; rdfs:label "linear scaling"@en ; rdfs:comment "used to be 'linear scaling algorithm'" ; rdfs:subClassOf nmrcv:NMR:1000079 . nmrcv:NMR:1001270 a rdfs:Class ; rdfs:label "lab personnel" ; rdfs:subClassOf nmrcv:NMR:1000010 . nmrcv:NMR:1400032 a rdfs:Class ; rdfs:label "calibration compound" ; rdfs:comment "def: The compound that produced the peak used to reference a spectrum during data pre-processing." ; rdfs:subClassOf nmrcv:NMR:1000881 . nmrcv:NMR:1000135 a rdfs:Class ; rdfs:label "CYANA software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000254 a rdfs:Class ; rdfs:label "Bigg metabolomics database identifier"@en ; rdfs:comment "PRS: rename 'identifyer' to 'identifier'"@en ; rdfs:subClassOf nmrcv:NMR:1000022 . nmrcv:NMR:1400134 a rdfs:Class ; rdfs:label "spectrum pre-processing software" ; rdfs:comment "def: A software artifact used during data pre-processing." ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000399 a rdfs:Class ; rdfs:label "Varian DDR2 instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400234 . a rdfs:Class ; rdfs:label "fetal bovine serum"@en ; rdfs:comment "Fetal bovine serum (FBS) or fetal calf serum (spelled foetal in Commonwealth English) is a material entity which correspsonds to the blood fraction remaining after the natural coagulation of blood, followed by centrifugation to remove any remaining red blood cells."@en ; rdfs:subClassOf . nmrcv:NMR:1000263 a rdfs:Class ; rdfs:label "Varian FID file"@en ; rdfs:subClassOf nmrcv:NMR:1400119 . nmrcv:NMR:1000186 a rdfs:Class ; rdfs:label "quatruplet feature"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . a rdfs:Class ; rdfs:label "isotopomer"@en ; rdfs:comment """a mass isotopomer (short for isotopic isomer) is a compound which differ from another one only by the position of an isotopic substitution in the molecular backbone. One in a collection of isomers with the same number of each isotope of each element but differing in their positions within the chemical structure."""@en ; rdfs:subClassOf . nmrcv:NMR:1400079 a rdfs:Class ; rdfs:label "zero order phase correction" ; rdfs:comment """def: A parameter used to mix real and imaginary part of an NMR spectrum that the real part of the spectrum is in pure absorption mode. altdef: The number of degrees that a central peak must be moved in order to achieve an absorptive mode line width.""" ; rdfs:subClassOf nmrcv:NMR:1000071 . a rdfs:Class ; rdfs:label "spin echo pulse sequence" ; rdfs:comment "A pulse cluster used in NMR experiments which manipulates signals such that, at the end of the sequence, the effects of chemical shift differences have been compensated/removed. Used most simply to compensate for inhomogeneities in the magnetic field but delays in the sequence also permit various possible manipulations of the magnetisation. For the pulse sequence see Phys. Rev., (1950), 80, pg 580." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "cell culture doubling time"@en ; rdfs:comment "the amount of time elapsed for a cell culture to growth twice its initial size, usually expressed in hour"@en ; rdfs:subClassOf . nmrcv:NMR:1000304 a rdfs:Class ; rdfs:label "premium shielded narrow bore magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000302 . nmrcv:NMR:1400054 a rdfs:Class ; rdfs:label "Hadamard encoding" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400048 . nmrcv:NMR:1000423 a rdfs:Class ; rdfs:label "CAS number"@en ; rdfs:subClassOf nmrcv:NMR:1000861 . a rdfs:Class ; rdfs:label "spatial region"@en ; rdfs:subClassOf . nmrcv:NMR:1400249 a rdfs:Class ; rdfs:label "APOLLO console" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400246 . a rdfs:Class ; rdfs:label "center value"@en ; rdfs:comment "A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data."@en ; rdfs:subClassOf . nmrcv:NMR:1000183 a rdfs:Class ; rdfs:label "nmrML Assign"@en ; rdfs:comment "nmrML-Assign is a web server for creating an nmrML file from a FID and a structure. The FID is first automatically processed with Bayesil. The resulting interactive spectrum allows assigning peaks to specific atoms in the structure and the assignments are saved in the nmrML format. For more information about nmrML please visit nmrML.org. nmrML-Assign works with 1H and 13C NMR spectra in Bruker or Agilent/Varian format."@en ; rdfs:subClassOf nmrcv:NMR:1000182 . a rdfs:Class ; rdfs:label "sodium nitrate" ; rdfs:comment "The inorganic nitrate salt of sodium." ; rdfs:subClassOf . nmrcv:NMR:1000056 a rdfs:Class ; rdfs:label "specific decoupling"@en ; rdfs:subClassOf nmrcv:NMR:1000044 . a rdfs:Class ; rdfs:label "correction objective"@en ; rdfs:comment "A correction objective is a data transformation objective where the aim is to correct for error, noise or other impairments to the input of the data transformation or derived from the data transformation itself"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "objective_achieved_by" ; rdfs:comment "This relation obtains between a a objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process." ; rdfs:domain ; rdfs:range . nmrcv:NMR:1400317 a rdfs:Class ; rdfs:label "TX" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1400101 a rdfs:Class ; rdfs:label "parameter" ; rdfs:comment "defneed" ; rdfs:subClassOf . nmrcv:NMR:1002017 a rdfs:Class ; rdfs:label "bin end" ; rdfs:comment "Bin end." ; rdfs:subClassOf nmrcv:NMR:1002014 . a rdfs:Class ; rdfs:label "history"@en ; rdfs:subClassOf . nmrcv:NMR:1000005 a rdfs:Class ; rdfs:label "sample volume" ; rdfs:comment "Total volume of solution used." ; rdfs:subClassOf nmrcv:NMR:1000548 . a rdfs:Class ; rdfs:label "chemical entity assignment" ; rdfs:comment "chemical entity assignment is an annotation which uses spectral information to assign and identify and molecular entity/chemical compound. Various methods manual and computer assisted may be used." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "regression analysis method"@en ; rdfs:comment "Regression analysis is a descriptive statistics technique that examines the relation of a dependent variable (response variable) to specified independent variables (explanatory variables). Regression analysis can be used as a descriptive method of data analysis (such as curve fitting) without relying on any assumptions about underlying processes generating the data."@en ; rdfs:subClassOf . nmrcv:NMR:1000175 a rdfs:Class ; rdfs:label "sweep width"@en ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "processed material"@en ; rdfs:comment "Is a material entity that is created or changed during material processing."@en ; rdfs:subClassOf . nmrcv:NMR:1000463 a rdfs:Class ; rdfs:label "instrument" ; rdfs:comment "Description of the instrument or the mass spectrometer." ; rdfs:subClassOf . nmrcv:NMR:1000190 a rdfs:Class ; rdfs:label "pulse parameter"@en ; rdfs:subClassOf nmrcv:NMR:1400101 . a rdfs:Class ; rdfs:label "normalization to a total sum"@en ; rdfs:comment "a normalization process which relies on the computing to total signal intensity by simply summing up those signals and then for each sample measurements, dividing it by the total signal. The total sum is used as reference to which sample signals are then compared."@en ; rdfs:subClassOf . nmrcv:NMR:1002002 a rdfs:Class ; rdfs:label "Chenomx NMR Suite software" ; rdfs:comment "Chenomx software for data analysis." ; rdfs:subClassOf nmrcv:NMR:1002001 . nmrcv:NMR:1400306 a rdfs:Class ; rdfs:label "ThermoMattson" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000023 a rdfs:Class ; rdfs:label "Metabolights identifier"@en ; rdfs:subClassOf nmrcv:NMR:1000022 . nmrcv:NMR:1400242 a rdfs:Class ; rdfs:label "liquid NMR probe" ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1000096 a rdfs:Class ; rdfs:label "manual phase correction"@en ; rdfs:subClassOf nmrcv:NMR:1000071 . nmrcv:NMR:1000203 a rdfs:Class ; rdfs:label "power value type"@en ; rdfs:subClassOf nmrcv:NMR:1000202 . nmrcv:NMR:1000799 a rdfs:Class ; rdfs:label "custom unreleased software" ; rdfs:comment "A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the MSI-NMR working group in order to have another CV term added." ; rdfs:subClassOf . nmrcv:NMR:1000224 a rdfs:Class ; rdfs:label "nmr signal intensity"@en ; rdfs:comment "an information object that describes the strength of the NMR signal" ; rdfs:subClassOf nmrcv:NMR:1000172 . a rdfs:Class ; rdfs:label "research-specific restrictions" ; rdfs:comment "This secondary category consent code indicates that use is limited to studies of a certain research type." ; rdfs:subClassOf . a rdf:Property ; rdfs:label "is restricted to" ; rdfs:comment "An object property linking a consent code to a specific restriction which further constrains it, such as research should be restricted to a specific disease or geographical location." ; rdfs:range . nmrcv:NMR:1000430 a rdfs:Class ; rdfs:label "Gaussian maximum position"@en ; rdfs:subClassOf nmrcv:NMR:1000428 . a rdfs:Class ; rdfs:label "microgram" ; rdfs:comment "A mass unit which is equal to one millionth of a gram or 10^[-6] g." ; rdfs:subClassOf . nmrcv:NMR:1400231 a rdfs:Class ; rdfs:label "Bruker NMR probe" ; rdfs:comment "https://www.bruker.com/products/mr/nmr/probes/probes.html" ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1000407 a rdfs:Class ; rdfs:label "trapezoid window function parameter"@en ; rdfs:subClassOf nmrcv:NMR:1400096 . nmrcv:NMR:1000291 a rdfs:Class ; rdfs:label "3mm standard tube"@en ; rdfs:subClassOf nmrcv:NMR:1000270 . nmrcv:NMR:1000042 a rdfs:Class ; rdfs:label "sodium nitrate"@en ; rdfs:subClassOf nmrcv:NMR:1000036 . a rdfs:Class ; rdfs:label "standard" ; rdfs:comment "Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "sandwich cell culture"@en ; rdfs:comment "a sandwich cell culture is a type of cell culture population where the grown cells are in contact with a substratum at the bottom and the top, thereby providing a more defined boundary and level of interaction than in suspension grown cells or in classic monolayer cell cultures." ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has grain" ; rdfs:comment "the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car." ; rdfs:range ; rdfs:subPropertyOf . nmrcv:NMR:1400243 a rdfs:Class ; rdfs:label "solid NMR probe" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1000269 a rdfs:Class ; rdfs:label "Shigemi tube"@en ; rdfs:subClassOf nmrcv:NMR:1400132 . a rdfs:Class ; rdfs:label "time unit" ; rdfs:comment "A unit which is a standard measure of the dimension in which events occur in sequence." ; rdfs:subClassOf . nmrcv:NMR:1001755 a rdfs:Class ; rdfs:label "contact phone number" ; rdfs:comment "Phone number of the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . nmrcv:NMR:1000071 a rdfs:Class ; rdfs:label "phase correction"@en ; rdfs:subClassOf nmrcv:NMR:1400038 . nmrcv:NMR:1000026 a rdfs:Class ; rdfs:label "1H spectrum reference compound"@en ; rdfs:subClassOf nmrcv:NMR:1400033 . a rdfs:Class ; rdfs:label "reaction identifier"@en ; rdfs:comment "a centrally registered identifier which denotes a chemical reaction."@en ; rdfs:subClassOf . nmrcv:NMR:1400209 a rdfs:Class ; rdfs:label "Bruker autosampler" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400002 . nmrcv:NMR:1400285 a rdfs:Class ; rdfs:label "NMR software data format" ; rdfs:subClassOf nmrcv:NMR:1001459 . a rdfs:Class ; rdfs:label "collection at logarithmic phase" ; rdfs:comment "a process of collecting a sample when the cell culture growth can be approximated by a logarithm function."@en ; rdfs:subClassOf . nmrcv:NMR:1000381 a rdfs:Class ; rdfs:label "JEOL Resonance 500MHz magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "extraction"@en ; rdfs:comment "A material separation in which a desired component of an input material is separated from the remainder" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nuclear magnetic resonance pulse sequence" ; rdfs:comment "A series of short (microsecond) bursts (pulses) of rf radiation separated by delays (of defined duration) designed to interact with, and manipulate the magnetic moments of spin-active nuclei during NMR spectroscopy." ; rdfs:subClassOf . nmrcv:NMR:1000630 a rdfs:Class ; rdfs:label "data processing parameter" ; rdfs:comment "Data processing parameter used in the data processing performed on the data file." ; rdfs:subClassOf nmrcv:NMR:1400101 . a rdfs:Class ; rdfs:label "site"@en ; rdfs:subClassOf . nmrcv:NMR:1000101 a rdfs:Class ; rdfs:label "shifted sine window function"@en ; rdfs:subClassOf nmrcv:NMR:1400071 . nmrcv:NMR:1000064 a rdfs:Class ; rdfs:label "co-dissolved internal reference"@en ; rdfs:subClassOf nmrcv:NMR:1002013 . a rdfs:Class ; rdfs:label "conditional specification"@en ; rdfs:comment "a directive information entity that specifies what should happen if the trigger condition is fulfilled"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "partial isotopomer"@en ; rdfs:comment "an isotopomer where the isotopic content of specific atoms is known for a part of the molecule" ; rdfs:subClassOf . nmrcv:NMR:1400119 a rdfs:Class ; rdfs:label "FID file" ; rdfs:comment """def: A reference to a file containing the raw FID. synonym: FID file reference""" ; rdfs:subClassOf nmrcv:NMR:1400267 . nmrcv:NMR:1000860 a rdfs:Class ; rdfs:label "peptide" ; rdfs:comment "A compound of low molecular weight that is composed of two or more amino acids." ; rdfs:subClassOf nmrcv:NMR:1000881 . nmrcv:NMR:1400057 a rdfs:Class ; rdfs:label "echo anti-echo coherence selection" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000008 . nmrcv:NMR:1400108 a rdfs:Class ; rdfs:label "post-acquisition water suppression" ; rdfs:comment """tempdef: A data processing technique used to suppress the water peak in a spectrum in order to get clearer results. defprov: Daniel Schober""" ; rdfs:subClassOf nmrcv:NMR:1000043 . a rdfs:Class ; rdfs:label "health/medical/biomedical research and clinical care" ; rdfs:comment "This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "device" ; rdfs:comment "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent." ; rdfs:subClassOf . nmrcv:NMR:1000884 a rdfs:Class ; rdfs:label "protein attribute" ; rdfs:comment "An nonphysical attribute describing a specific protein." ; rdfs:subClassOf nmrcv:NMR:1000547 . a rdfs:Class ; rdfs:label "data use requirements" ; rdfs:comment "Requirements indicate additional conditions set for use." ; rdfs:subClassOf . nmrcv:NMR:1400076 a rdfs:Class ; rdfs:label "maximum intensity projection" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400075 . nmrcv:NMR:1000008 a rdfs:Class ; rdfs:label "quadrature detection"@en ; rdfs:comment """One of the problems that should be apparent after observing the spectrum and the FID is that it is not possible to determine if the frequency is positive or negative. The instrument uses a spectrometer frequency and all signal frequencies are measured relative to the spectrometer frequency. If a molecule produces two signals, one at 300,000,001 Hz and another at 299,999,999 Hz, and the spectrometer frequency is 300,000,000 Hz, the first signal is at +1 Hz and the second is at -1 Hz. Electronically the lower frequency signals are very easy frequency to detect, transmit, amplify and sample. The complication with this rotating frame of reference is that a single detector can not distinguish positive and negative frequencies. This problem is why quadrature detection is important. Quadrature detection uses two detector channels separated by 90 degrees. These are referred to as the real channel and the imaginary channel. Using these two channels, it is possible to distinguish positive and negative frequencies. This section shows how the quadrature signal is processed to obtain an NMR spectrum. The Fourier transform produces a complex number with a real and an imaginary component. The Re function extracts the real spectrum and the Im function extracts the imaginary spectrum from the complex number.""" ; rdfs:subClassOf nmrcv:NMR:1400042 . nmrcv:NMR:1000055 a rdfs:Class ; rdfs:label "off resonance decoupling"@en ; rdfs:subClassOf nmrcv:NMR:1000044 . nmrcv:NMR:1000258 a rdfs:Class ; rdfs:label "peak fitting"@en ; rdfs:subClassOf nmrcv:NMR:1000015 . nmrcv:NMR:1000411 a rdfs:Class ; rdfs:label "thirty degree pulse duration"@en ; rdfs:comment "The duration of the excitation pulse needed to rotate the magnetisation vector by 30 degrees." ; rdfs:subClassOf nmrcv:NMR:1000190 . nmrcv:NMR:1001269 a rdfs:Class ; rdfs:label "instrument vendor" ; rdfs:subClassOf nmrcv:NMR:1400254 . nmrcv:NMR:1002001 a rdfs:Class ; rdfs:label "Chenomx software" ; rdfs:comment "Chenomx software for data acquisition and analysis." ; rdfs:subClassOf nmrcv:NMR:1000091 . a rdfs:Class ; rdfs:label "tetramethylammonium bromide" ; rdfs:comment "The bromide salt of tetramethylammonium." ; rdfs:subClassOf . nmrcv:NMR:1000239 a rdfs:Class ; rdfs:label "Mestrelab software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "one-dimensional temporal region"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "normalization data transformation"@en ; rdfs:comment "A normalization data transformation is a data transformation that has objective normalization."@en ; rdfs:subClassOf . nmrcv:NMR:1400310 a rdfs:Class ; rdfs:label "micromass" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000012 a rdfs:Class ; rdfs:label "NMR instrument type"@en ; rdfs:subClassOf nmrcv:NMR:1000496 . a rdfs:Class ; rdfs:label "sample preparation blank"@en ; rdfs:comment "a material entity corresponding to a sample containing no biological sample, which undergoes all laboratory process of preparation as used for test samples and used as a negative control to evaluate contamination effect and artefacts caused by reactions occurring during the sample preparation steps of test samples."@en ; rdfs:subClassOf . nmrcv:NMR:1000327 a rdfs:Class ; rdfs:label "NMRViewer software"@en ; rdfs:comment "Developed by Daniel Jacob, INRA Bordeaux"@en ; rdfs:subClassOf nmrcv:NMR:1000322 . nmrcv:NMR:1000066 a rdfs:Class ; rdfs:label "residual solvent signal"@en ; rdfs:subClassOf nmrcv:NMR:1002013 . a rdfs:Class ; rdfs:label "measure function"@en ; rdfs:comment "Measure function is a function that is borne by a processed material and realized in a process in which information about some entity is expressed relative to some reference."@en ; rdfs:subClassOf . nmrcv:NMR:1400259 a rdfs:Class ; rdfs:label "MR Resources" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "metabolism quenching by 13 CD3-QDA in cold CH3CN"@en ; rdfs:comment "a type of metabolism immediate extinction using cold acetonitrile"@en ; rdfs:subClassOf . nmrcv:NMR:1000300 a rdfs:Class ; rdfs:label "rNMR-IO"@en ; rdfs:subClassOf nmrcv:NMR:1000211 . a rdfs:Class ; rdfs:label "allele information"@en ; rdfs:comment "a genetic alteration information that about one of two or more alternative forms of a gene or marker sequence and differing from other alleles at one or more mutational sites based on sequence. Polymorphisms are included in this definition."@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "part of"@en ; rdfs:comment "a core relation that holds between a part and its whole"@en ; rdfs:seeAlso ; rdfs:range . a rdfs:Class ; rdfs:label "population origins or ancestry research" ; rdfs:comment "This primary category consent code indicates that use of the data is limited to the study of population origins or ancestry." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "genetic characteristics information"@en ; rdfs:comment "a data item that is about genetic material including polymorphisms, disease alleles, and haplotypes."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "establishing cell culture" ; rdfs:comment "a process through which a new type of cell culture or cell line is created, either through the isolation and culture of one or more cells from a fresh source, or the deliberate experimental modification of an existing cell culture (e.g passaging a primary culture to become a secondary culture or line, or the immortalization or stable genetic modification of an existing culture or line)." ; rdfs:subClassOf . nmrcv:NMR:1400267 a rdfs:Class ; rdfs:label "data file" ; rdfs:comment "Any data file as generated by some acquisition computer or console." ; rdfs:subClassOf . nmrcv:NMR:1000370 a rdfs:Class ; rdfs:label "JNM-ECZS Series FT NMR instrument"@en ; rdfs:comment """The entry model ECZS spectrometer has the same basic functions, performance and capability of high-end model. The main console is amazingly small, less than 1/2 that of the current ECS series spectrometer. Coupling the use of advanced software with highly reliable automation, all routine daily measurements can be automated, while the use of the autotune Supercool probe realizes the world’s highest sensitivity in its class. Whatever your application field ECZS can demonstrate its power. 400 MHz""" ; rdfs:subClassOf nmrcv:NMR:1400226 . a rdfs:Class ; rdfs:label "1H--1H correlation spectroscopy" ; rdfs:comment "A type of homonuclear NMR spectroscopy where a second frequency dimension is employed to disperse the signals and reveal correlations between protons which are J-coupled (usually \\leq 3 bonds apart)." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "heteronuclear Hartmann Hahn pulse sequence" ; rdfs:comment "An NMR pulse sequence used to transfer magnetisation between protons and covalently bound (spin active) heteronuclei via isotropic mixing of their magnetisation. Used to e.g. enhance the NMR signal of heteronuclei or to correlate chemical shifts of protons with heteronuclei. For the pulse sequence see J. Magn. Reson., (1991), 91, pg 444." ; rdfs:subClassOf . nmrcv:NMR:1002006 a rdfs:Class ; rdfs:label "acquisition parameter file" ; rdfs:comment "Parameter file used to configure the acquisition of raw data on the instrument." ; rdfs:subClassOf nmrcv:NMR:1400267 . nmrcv:NMR:1400278 a rdfs:Class ; rdfs:label "solid phase extraction NMR" ; rdfs:comment "A Solid Phase Extraction (SPE) system provides an interface between liquid chromatography (LC) and NMR. For the process of LC-SPE™ NMR a chromatographic separation is done and the peaks of interest are trapped on an individual SPE cartridge after the column. The peak selection is done either by UV detection or by evaluation of the on-line registered MS or MSn spectra." ; rdfs:subClassOf nmrcv:NMR:1000012 . nmrcv:NMR:1000417 a rdfs:Class ; rdfs:label "smarts"@en ; rdfs:subClassOf nmrcv:NMR:1000868 . a rdfs:Class ; rdfs:label "logarithmic transformation"@en ; rdfs:comment "A logarithmic transformation is a data transformation consisting in the application of the logarithm function with a given base a (where a>0 and a is not equal to 1) to a (one dimensional) positive real number input. The logarithm function with base a can be defined as the inverse of the exponential function with the same base. See e.g. http://en.wikipedia.org/wiki/Logarithm."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "specimen collection objective" ; rdfs:comment "A objective specification to obtain a material entity for potential use as an input during an investigation." ; rdfs:subClassOf . nmrcv:NMR:1000428 a rdfs:Class ; rdfs:label "Gaussian window function parameter"@en ; rdfs:subClassOf nmrcv:NMR:1400096 . a rdfs:Class ; rdfs:label "time series design"@en ; rdfs:comment "Groups of assays that are related as part of a time series."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "ammonium bicarbonate buffer"@en ; rdfs:comment "ammonium bicarbonate is kind of buffer solution where the weak base is ammonium and the weak acid carbonic acid."@en ; rdfs:subClassOf . nmrcv:NMR:1000082 a rdfs:Class ; rdfs:label "probabilistic quotient normalization"@en ; rdfs:subClassOf nmrcv:NMR:1000078 . nmrcv:NMR:1000053 a rdfs:Class ; rdfs:label "sample batch information" ; rdfs:comment "Sample batch lot identifier." ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1400279 a rdfs:Class ; rdfs:label "Capillary LC-NMR" ; rdfs:comment "Capillary LC-NMR is a hyphenated technique coupling capillary liquid chromatography and NMR, which increases sensitivity dramatically through the use of miniaturization of the chromatographic techniques and NMR detection volume." ; rdfs:subClassOf nmrcv:NMR:1400276 . a rdfs:Class ; rdfs:label "protein concentration"@en ; rdfs:comment "ratio of protein content over a reference standard element (usually bovine serum albumin (BSA))"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "reference corrected m/z" ; rdfs:comment "a m over z ratio which underwent a correction data transformation that takes into account the signal obtained from a reference compound and its spectral characteristics." ; rdfs:subClassOf . nmrcv:NMR:1000385 a rdfs:Class ; rdfs:label "single peak feature"@en ; rdfs:subClassOf nmrcv:NMR:1000231 . a rdfs:Class ; rdfs:label "petri dish" ; rdfs:comment " a petri dish is a container used to grow cells or perform biochemical reactions, which used to be made of glass, but which is now available in a variety of surface treated or non-treated plastic polymers. a petri dish is a thin cylinder with the upper part acting as a lid, resting on small peg, large enough to enable gaseaous exchanges but still preventing water evaporation."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "acetylation"@en ; rdfs:comment "a kind of derivatization which results in the addition of acetyl group to molecules in an attempt to make ions derived from it more volatile in a gas-chromatography experiment." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "maximum m/z values signal intensity with baseline substraction"@en ; rdfs:comment "Signal intensity of all m/z values at the maximum of the peak (also known as maximum signal intensity) and subtracting baseline."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "consent code primary category" ; rdfs:comment "A categorical data item indicating the primary category the consent code belongs to according to Dyke et al. 2016." ; rdfs:subClassOf . nmrcv:NMR:1000374 a rdfs:Class ; rdfs:label "DNP-NMR"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "magic angle spinning decoupling pulse sequence" ; rdfs:comment "An NMR pulse sequence, used in magic angle spinning, that decouples nuclei i.e. removes the effects of (usually) J-coupling (line splitting) from the spectrum." ; rdfs:subClassOf . nmrcv:NMR:1000207 a rdfs:Class ; rdfs:label "complex value types"@en ; rdfs:subClassOf nmrcv:NMR:1000202 . nmrcv:NMR:1000388 a rdfs:Class ; rdfs:label "Oxford Instruments"@en ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000361 a rdfs:Class ; rdfs:label "bucket importing"@en ; rdfs:subClassOf nmrcv:NMR:1400138 . nmrcv:NMR:1400037 a rdfs:Class ; rdfs:label "NMR pulse sequence" ; rdfs:comment "def: A sequence of excitation pulses." ; rdfs:subClassOf nmrcv:NMR:1000190 . nmrcv:NMR:1000235 a rdfs:Class ; rdfs:label "Varian probe"@en ; rdfs:subClassOf nmrcv:NMR:1400014 . a rdfs:Class ; rdfs:label "assessing across studies variability"@en ; rdfs:comment "assessing across studies variability is a quality control process which aims at monitoring the consistency of signal acquisitions between different studies (for instance in the context of meta-analysis and data integration) in order to detect unwanted causes of variation (i.e. variation that was not planned and that should be taken into account)."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "positionally labeled isotopic tracer"@en ; rdfs:comment "a specificly labeled isotopic tracer is an isotopic tracer where only specific positions on the backbone have been replaced with an isotopic atom. Such molecules are often used in Fluxomics analysis and metabolic path elucidation experiments."@en ; rdfs:subClassOf . nmrcv:NMR:1000586 a rdfs:Class ; rdfs:label "contact name" ; rdfs:comment "Name of the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . nmrcv:NMR:1400253 a rdfs:Class ; rdfs:label "magnetic field strength" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400027 . nmrcv:NMR:1000189 a rdfs:Class ; rdfs:label "simulated spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1000200 . nmrcv:NMR:1000060 a rdfs:Class ; rdfs:label "phosphorus"@en ; rdfs:subClassOf nmrcv:NMR:1000058 . nmrcv:NMR:1000075 a rdfs:Class ; rdfs:label "spectral referencing"@en ; rdfs:subClassOf nmrcv:NMR:1400038 . nmrcv:NMR:1000439 a rdfs:Class ; rdfs:label "BMRB/XML file format"@de ; rdfs:subClassOf nmrcv:NMR:1000438 . nmrcv:NMR:1000037 a rdfs:Class ; rdfs:label "ammonia (liquid)"@en ; rdfs:subClassOf nmrcv:NMR:1000036 . a rdfs:Class ; rdfs:label "phosphorus-31 atom" ; rdfs:comment "The stable isotope of phosphorus with relative atomic mass 30.973762 and nuclear spin (1)/2." ; rdfs:subClassOf . nmrcv:NMR:1400024 a rdfs:Class ; rdfs:label "sample temperature in autosampler" ; rdfs:comment "def: The temperature of an item of analysis material whilst in an autosampler." ; rdfs:subClassOf nmrcv:NMR:1400262 . a rdfs:Class ; rdfs:label "13C-constrained flux balance analysis"@en ; rdfs:comment "" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "minimum information standard" ; rdfs:comment "A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result." ; rdfs:subClassOf . nmrcv:NMR:1400093 a rdfs:Class ; rdfs:label "additional axis unit" ; rdfs:comment "def: The unit of measurement of the second dimension of a 2D NMR dataset." ; rdfs:subClassOf nmrcv:NMR:1400101 . a rdfs:Class ; rdfs:label "version number"@en ; rdfs:comment "A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name."@en ; rdfs:subClassOf . nmrcv:NMR:1000322 a rdfs:Class ; rdfs:label "NMR spectrum vizualisation software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "medium dose"@en ; rdfs:comment "medium dose is a dose specifically set to trigger limited but clear response in the system it is administered to, those effects are not expected to be toxic but may be. Also, the denomination allows a discrete, categorical classification of the dose points, irrespective of the actual quantity administered thereby allowing to capture the intent of the operator, something which is not necessary explicit when reading the quantitative dose reading (specific to a chemical entity and a system)."@en ; rdfs:subClassOf . nmrcv:NMR:1400289 a rdfs:Class ; rdfs:label "JEOL Alpha format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "NMR instrument"@en ; rdfs:subClassOf . nmrcv:NMR:1000305 a rdfs:Class ; rdfs:label "premium shielded wide bore magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000302 . nmrcv:NMR:1000392 a rdfs:Class ; rdfs:label "Phillips"@en ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "normalization to a single internal standard"@en ; rdfs:comment "a normalization process which relies on the signal intensity measured for one reference compound (an internal standard) injected or added to the test samples in known quantity, thereby allowing sample comparison which have been placed on equal footing based on this reference."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "carrier gas"@en ; rdfs:comment "a carrier gas is a chemical entity in gaseous phase with is used for eluting chemical compound in a gas chromatography process."@en ; rdfs:subClassOf . nmrcv:NMR:1000347 a rdfs:Class ; rdfs:label "group time delay"@en ; rdfs:comment "GRPDLY - is the time delay (in number of points?) between acquiring the analog signal and producing the digital signal (i.e. \"The group delay is the time necessary for the digital filter function to “walk into” the raw FID and start generating significant intensity.\")" ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1001456 a rdfs:Class ; rdfs:label "analysis software" ; rdfs:comment "Analysis software." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "categorical measurement datum" ; rdfs:comment "A measurement datum that is reported on a categorical scale" ; rdfs:subClassOf . nmrcv:NMR:1000000 a rdfs:Class ; rdfs:label "integer32"@en ; rdfs:subClassOf nmrcv:NMR:1000336 . nmrcv:NMR:1400232 a rdfs:Class ; rdfs:label "JEOL NMR probe" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400014 . a rdfs:Class ; rdfs:label "genotype information"@en ; rdfs:comment "a genetic characteristics information that is about the genetic material of an organism and minimally includes information about the genetic background and can in addition contain information about specific alleles, genetic modifications, etc."@en ; rdfs:subClassOf . nmrcv:NMR:1400087 a rdfs:Class ; rdfs:label "number of scans" ; rdfs:comment "def: The number of repeat scans performed and summed to create the data set for an NMR sample." ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "symbol"@en ; rdfs:comment "An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity."@en ; rdfs:subClassOf . nmrcv:NMR:1000311 a rdfs:Class ; rdfs:label "PynmrML"@en ; rdfs:comment "A Python based vendor to nmrML converter developed by MIchael Wilson at TMIC Edmonton."@en ; rdfs:subClassOf nmrcv:NMR:1000211 . a rdfs:Class ; rdfs:label "silylation"@en ; rdfs:comment "a kind of derivatization which results in the addition of silyl group to molecules in an attempt to make ions derived from it more volatile in a gas-chromatography experiment."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "pulsed nuclear magnetic resonance spectroscopy" ; rdfs:comment "Spectroscopy where the energy states of spin-active nuclei placed in a static magnetic field are interrogated by inducing transitions between the states via radio frequency irradiation. Each experiment consists of a sequence of radio frequency pulses with delay periods in between them." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "constantly fed-batch culture reactor"@en ; rdfs:comment "a constantly fed-btach culture reactor is a device in which the feed rate of a growth-limiting substrate is constant, i.e. the feed rate is invariant during the culture."@en ; rdfs:subClassOf . nmrcv:NMR:1000396 a rdfs:Class ; rdfs:label "Varian Mercury plus"@en ; rdfs:subClassOf nmrcv:NMR:1400235 . a rdfs:Class ; rdfs:label "immaterial entity"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "time limit on use" ; rdfs:comment "This requirement indicates that use is approved for a specific number of months." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolite concentration"@en ; rdfs:comment "the concentration of a molecular entity acting as metabolite and stated in standard concentration units, such molar, micromolar and so on"@en ; rdfs:subClassOf . nmrcv:NMR:1400071 a rdfs:Class ; rdfs:label "sine window function" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400068 . a rdfs:Class ; rdfs:label "reaction rate"@en ; rdfs:comment "the reaction rate is a rate measurement datum denoting a biochemical reaction as measured according to standard experimental methods."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Archaea" ; rdfs:subClassOf . nmrcv:NMR:1001757 a rdfs:Class ; rdfs:label "contact toll-free phone number" ; rdfs:comment "Toll-free phone number of the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . a rdfs:Class ; rdfs:label "confluence level"@en ; rdfs:comment "confluence level is a measurement datum denotes the status of a cell culture and how cells are occupying the space available in a plate. confluence levels are stated in %."@en ; rdfs:subClassOf . nmrcv:NMR:1000316 a rdfs:Class ; rdfs:label "proc3s"@en ; rdfs:subClassOf nmrcv:NMR:1000250 . a rdfs:Class ; rdfs:label "internal standard role"@en ; rdfs:comment "internal standard role is a role played by a chemical entity added in known amount to an analytical sample"@en ; rdfs:subClassOf . nmrcv:NMR:1000276 a rdfs:Class ; rdfs:label "Varian NMR software"@en ; rdfs:subClassOf nmrcv:NMR:1000091 . nmrcv:NMR:1000882 a rdfs:Class ; rdfs:label "protein" ; rdfs:comment "A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein." ; rdfs:subClassOf nmrcv:NMR:1000881 . a rdfs:Class ; rdfs:label "cultured cell" ; rdfs:comment "A cell in vitro that is or has been maintained or propagated as part of a cell culture." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Carr-Purcell-Meiboom-Gill pulse sequence" ; rdfs:comment "A pulse sequence which is applied during nuclear magnetic resonance spectroscopy to measure spin--spin (T2) relaxation times. For the pulse sequence see Rev. Sci. Inst., (1958), 29, pg 688." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "AbsoluteIDQ p150 Kit"@en ; rdfs:comment "AbsoluteIDQ p150 kit is a reagent system manufactured by Biocrates AG, Austria which allows the targeted metabolite profiling of up to 163 distinct molecular entities with quantitative accuracy on human plasma samples."@en ; rdfs:subClassOf . nmrcv:NMR:1000350 a rdfs:Class ; rdfs:label "non-uniform sampling"@en ; rdfs:comment "with non-uniform, some samples are skipped, there are different strategies for which to skip, but we can simply record the time point as well as the complex data point in order to represent this type of data." ; rdfs:subClassOf nmrcv:NMR:1000348 . nmrcv:NMR:1000086 a rdfs:Class ; rdfs:label "2D J-resolved spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1400162 . nmrcv:NMR:1000228 a rdfs:Class ; rdfs:label "procpar"@en ; rdfs:subClassOf nmrcv:NMR:1000252 . nmrcv:NMR:1400191 a rdfs:Class ; rdfs:label "Bruker CryoProbe" ; rdfs:comment """def: The Bruker BioSpin CryoProbe is a high-performance cryogenically cooled probe developed for high-resolution applications. It has improved signal/noise (S/N) ratios obtained by reducing the operating temperature of the coil and the pre-amplifier. As a result, the efficiency of the coil is improved and the noise of the coil and the pre-amplifier are reduced.The dramatic increase in the S/N ratio by a factor of 3-4, as compared to conventional probes, leads to a possible reduction in experiment time of up to 16 or a reduction in required sample concentration by a factor of up to 4. The CryoProbes possess key characteristics for NMR analysis: Significant S/N gains (with moderately salty samples also) Short pulse widths Short ring down times Linear behavior in power response Gradient capability CryoProbes are available as Triple Resonance, Dual, Selective X Detection, MicroImaging, and Quad Nucleus Probes configurations at 400 MHz and higher All high resolution probes have a lock circuit All high resolution probes have Z-gradient defprov: Bruker website""" ; rdfs:subClassOf nmrcv:NMR:1000324 , nmrcv:NMR:1400231 . nmrcv:NMR:1400280 a rdfs:Class ; rdfs:label "direct detection probe" ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1000246 a rdfs:Class ; rdfs:label "iNMR software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "figure"@en ; rdfs:comment "An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something."@en ; rdfs:subClassOf . nmrcv:NMR:1000178 a rdfs:Class ; rdfs:label "y-axis type"@en ; rdfs:subClassOf nmrcv:NMR:1000013 . a rdfs:Class ; rdfs:label "PBS buffer"@en ; rdfs:comment "Phosphated buffer saline (PBS) buffer is a buffer which is a water-based salt solution containing disodium hydrogen phosphate, sodium chloride and, in some formulations, potassium chloride and potassium dihydrogen phosphate."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "network"@en ; rdfs:comment "The chemical compounds of a living cell are connected by biochemical reactions which convert one compound into another. The reactions are catalyzed by enzymes. Thus, all compounds in a cell are parts of an intricate biochemical network of reactions which is called metabolic network. It is possible to use network analyses to infer how selection acts on metabolic pathways."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "spatiotemporal region"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "gene expression" ; rdfs:comment "The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "spectroscopy" ; rdfs:comment "The study of the interaction of a sample with radiation or particles for measurement or detection." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "material entity"@en ; rdfs:comment "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "gas chromatography"@en ; rdfs:comment "gas chromatography is a material component separation process which use a mobile phase in gaseous form to force a mixture of chemical through chromatography columns and associated detecting equipment, which may be a mass spectrometry in GC-MS applications."@en ; rdfs:subClassOf . nmrcv:NMR:1000015 a rdfs:Class ; rdfs:label "peak processing"@en ; rdfs:subClassOf nmrcv:NMR:1400038 . nmrcv:NMR:1400166 a rdfs:Class ; rdfs:label "2D NMR acquisition parameter set" ; rdfs:comment """defneed synonym: 2D NMR acquisition parameter set""" ; rdfs:subClassOf nmrcv:NMR:1400061 . nmrcv:NMR:1400321 a rdfs:Class ; rdfs:label "Bruker WIN NMR format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "assay" ; rdfs:comment "A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies." ; rdfs:subClassOf . nmrcv:NMR:1002003 a rdfs:Class ; rdfs:label "Varian FID format" ; rdfs:comment "file=xsd:IDREF." ; rdfs:subClassOf nmrcv:NMR:1000767 . nmrcv:NMR:1000010 a rdfs:Class ; rdfs:label "contact role"@en ; rdfs:subClassOf nmrcv:NMR:1000585 . nmrcv:NMR:1000116 a rdfs:Class ; rdfs:label "4D spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1000117 . nmrcv:NMR:1000337 a rdfs:Class ; rdfs:label "zlib"@en ; rdfs:subClassOf nmrcv:NMR:1000341 . nmrcv:NMR:1000210 a rdfs:Class ; rdfs:label "f2 axis"@en ; rdfs:subClassOf nmrcv:NMR:1000208 . nmrcv:NMR:1000191 a rdfs:Class ; rdfs:label "JEOL FID format"@en ; rdfs:subClassOf nmrcv:NMR:1000767 . nmrcv:NMR:1400161 a rdfs:Class ; rdfs:label "1D spectrum" ; rdfs:comment """defneed synonym: 1D spectrum""" ; rdfs:subClassOf nmrcv:NMR:1000117 . nmrcv:NMR:1400194 a rdfs:Class ; rdfs:label "1mm MicroProbe" ; rdfs:comment """def: Over the past few years there has been a significantly growing demand for miniaturization in all areas ofmodern research and development. Evoked by many exciting applications, there is a need for analytical methods which require less amounts of sample. Bruker BioSpin meets this challenge with a revolutionary NMR probe design: The 1mm MicroProbe. It operates with disposable 1mm capillary sample tubes and the sample volume of 5 microliters enables the use of lowest amounts of sample to run all high resolution NMR experiments with outstanding sensitivity and up to 16 times faster measurements. Due to the TXI-type probe design, the z-gradient coil and the automatic matching and tuning accessory, the 1mm MicroProbe can be used for a wide variety of NMR experiments. The key advantages of this probe include: up to 4 times higher mass sensitivity than 5mm conventional probes (with respect to the same sample amount) excellent solvent suppression properties virtually no salt effect discrete samples in tubes that can be sealed and stored automation accessory for sample preparation and handling available defprov: Bruker website""" ; rdfs:subClassOf nmrcv:NMR:1400231 . nmrcv:NMR:1400017 a rdfs:Class ; rdfs:label "number of acquisition data points" ; rdfs:comment "tempdef: The number of data points in a data set." ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "AbsoluteIDQ p180 Kit"@en ; rdfs:comment "AbsoluteIDQ p180 kit is a reagent system manufactured by Biocrates AG, Austria which allows the targeted metabolite profiling of up to 188 distinct endogenous molecular entities with quantitative accuracy from 5 different compound classes (i.e. acylcarnitines, amino acids, hexoses, phospho- and sphingolipids and biogenic amines). The assay requires very small sample amounts (10 μL) and shows excellent reproducibility."@en ; rdfs:subClassOf . nmrcv:NMR:1000124 a rdfs:Class ; rdfs:label "heteronuclear exchange spectroscopy spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . a rdfs:Class ; rdfs:label "two dimensional cartesian spatial coordinate datum"@en ; rdfs:comment "A cartesion spatial coordinate datum that uses two values to specify a position within a two dimensional spatial region"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has x coordinate value"@en ; rdfs:domain ; rdfs:range xsd:float . a rdf:Property ; rdfs:label "has y coordinate value"@en ; rdfs:domain ; rdfs:range xsd:float . a rdf:Property ; rdfs:label "denotes"@en ; rdfs:comment "denotes is a primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "has coordinate unit label"@en ; rdfs:comment "relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdfs:Class ; rdfs:label "analyte role"@en ; rdfs:comment "A role borne by a molecular entity or an atom and realized in an analyte assay which achieves the objective to measure the magnitude/concentration/amount of the analyte in the entity bearing evaluant role"@en ; rdfs:subClassOf . nmrcv:NMR:1000408 a rdfs:Class ; rdfs:label "complex64 Integer"@en ; rdfs:comment "This byte format uses a consecutive array of two 32bit integer numbers to represent the real and imaginary part of the complex values (2x32bits=>2x4bytes=> 2 integers) for the FID datatype." ; rdfs:subClassOf nmrcv:NMR:1000336 . nmrcv:NMR:1000260 a rdfs:Class ; rdfs:label "deconvolution"@en ; rdfs:subClassOf nmrcv:NMR:1000015 . a rdfs:Class ; rdfs:label "isotopic labeling"@en ; rdfs:comment "Isotopic labeling (or isotopic labelling) is a technique used to track the passage of an isotope (an atom with a detectable variation) through a reaction, metabolic pathway, or cell. The reactant is 'labeled' by replacing specific atoms by their isotope."@en ; rdfs:subClassOf . nmrcv:NMR:1000372 a rdfs:Class ; rdfs:label "NanoBay400 MHz"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "material separation device" ; rdfs:comment "A device with a separation function realized in a planed process" ; rdfs:subClassOf . nmrcv:NMR:1000270 a rdfs:Class ; rdfs:label "standard tube"@en ; rdfs:subClassOf nmrcv:NMR:1000271 . nmrcv:NMR:1000899 a rdfs:Class ; rdfs:label "de facto standard" ; rdfs:comment "A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard." ; rdfs:subClassOf nmrcv:NMR:1000898 . nmrcv:NMR:1400288 a rdfs:Class ; rdfs:label "JEOL Lambda format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "centrally registered identifier symbol"@en ; rdfs:comment "A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry."@en ; rdfs:subClassOf . nmrcv:NMR:1000221 a rdfs:Class ; rdfs:label "data simulation"@en ; rdfs:comment "used to be labeled 'NMR spectrum simulation'" ; rdfs:subClassOf . nmrcv:NMR:1400248 a rdfs:Class ; rdfs:label "tecmag EAGLE probe" ; rdfs:comment """def: The Eagle™ is a 4 mm 1H/X solid-state MAS probe with a top spinning speed of 18 kHz. Its simple design is robust, reliable and easy to spin. Configurations are available for 200 to 600 MHz widebore magnets on Tecmag, Bruker, Chemagnetics, JEOL and Varian spectrometers. defprov: website""" ; rdfs:subClassOf nmrcv:NMR:1400243 . nmrcv:NMR:1000404 a rdfs:Class ; rdfs:label "Agilent DDR 2 w/ HCN cryoprobe"@en ; rdfs:subClassOf nmrcv:NMR:1000400 . nmrcv:NMR:1400200 a rdfs:Class ; rdfs:label "Hyphenated NMR instrument" ; rdfs:comment "NMR Instruments using hyphenated analytical techniques combining mass spectrometry and chromatograph." ; rdfs:subClassOf nmrcv:NMR:1000012 . nmrcv:NMR:1400059 a rdfs:Class ; rdfs:label "NMR instrument" ; rdfs:comment """def: An Instrument which is used to carry out a NMR analysis of some sample. synonym: NMR instrument""" ; rdfs:subClassOf nmrcv:NMR:1000463 . a rdfs:Class ; rdfs:label "C13"@en ; rdfs:comment """C13 is a tool for quantification of in vivo metabolic fluxes, from carbon labelling experiments. The underlying approach is metabolic flux analysis based on stationary carbon isotope labelling experiments, using fractional enrichment data. The mathematical framework adopted herein is the one developed by Wiechert and de Graaf (1997). It is developed and maintained at the Chalmers University of Technology, Department of Chemical and Biological Engineering, Systems Biology group , Kemivägen 10 412 96 Göteborg, Sweden."""@en ; rdfs:subClassOf . nmrcv:NMR:1000021 a rdfs:Class ; rdfs:label "apodization" ; rdfs:comment """Apodization is an umbrella term that is used to refer to signal processing covering the manipulation of the FID to either increase signal-to-noise (S/N) or resolution. it is usually possible to gain either S/N or resolution, but not both. Apodization is usually performed by applying a window function to the FID""" ; rdfs:subClassOf nmrcv:NMR:1400041 . a rdfs:Class ; rdfs:label "96-well microplate"@en ; rdfs:comment "96-well microplate is an array of wells usually arranged in 8 rows of 12 columns whose volume range from 0.2 ml to 1.5 ml and which are used to grow cell or perform biochemical, in-vitro reactions. The material making up the plate may vary and may be surface treated in many custom way."@en ; rdfs:subClassOf . nmrcv:NMR:1000088 a rdfs:Class ; rdfs:label "Metaboquant software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1400131 a rdfs:Class ; rdfs:label "flow probe" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400129 . nmrcv:NMR:1000344 a rdfs:Class ; rdfs:label "uncompressed data"@en ; rdfs:subClassOf nmrcv:NMR:1000341 . nmrcv:NMR:1000271 a rdfs:Class ; rdfs:label "Bruker tube"@en ; rdfs:subClassOf nmrcv:NMR:1400132 . nmrcv:NMR:1000044 a rdfs:Class ; rdfs:label "decoupling method"@en ; rdfs:comment "Nuclear magnetic resonance decoupling (NMR decoupling for short) is a special method used in nuclear magnetic resonance (NMR) spectroscopy where a sample to be analyzed is irradiated at a certain frequency or frequency range to eliminate fully or partially the effect of coupling between certain nuclei. NMR coupling refers to the effect of nuclei on each other in atoms within a couple of bonds distance of each other in molecules. This effect causes NMR signals in a spectrum to be split into multiple peaks which are up to several hertz frequency from each other. Decoupling fully or partially eliminates splitting of the signal between the nuclei irradiated and other nuclei such as the nuclei being analyzed in a certain spectrum. NMR spectroscopy and sometimes decoupling can help determine structures of chemical compounds." ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "biological role" ; rdfs:comment "A role played by the molecular entity or part thereof within a biological context." ; rdfs:subClassOf . nmrcv:NMR:1000138 a rdfs:Class ; rdfs:label "XEASY software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1400316 a rdfs:Class ; rdfs:label "Applied Biosystems" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "material sample" ; rdfs:comment "A material entity that has the material sample role" ; rdfs:subClassOf , . nmrcv:NMR:1400020 a rdfs:Class ; rdfs:label "projection axis" ; rdfs:comment "def: The axis onto which the spectrum was projected." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1000240 a rdfs:Class ; rdfs:label "ACD spectrus software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000156 a rdfs:Class ; rdfs:label "JEOL instrument model"@en ; rdfs:subClassOf nmrcv:NMR:1000031 . nmrcv:NMR:1400305 a rdfs:Class ; rdfs:label "multiplet feature" ; rdfs:comment "J-coupler" ; rdfs:subClassOf nmrcv:NMR:1400006 . a rdfs:Class ; rdfs:label "diagram"@en ; rdfs:comment "A figure that expresses one or more propositions"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "object aggregate"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "data set"@en ; rdfs:comment "A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets."@en ; rdfs:subClassOf . nmrcv:NMR:1000312 a rdfs:Class ; rdfs:label "MetaboAnalyst software"@en ; rdfs:comment "A web server designed to permit comprehensive metabolomic data analysis, visualization and interpretation. It supports a wide range of complex statistical calculations and high quality graphical rendering functions that require significant computational resources."@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000355 a rdfs:Class ; rdfs:label "ABX3 multiplet pattern"@en ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1000420 a rdfs:Class ; rdfs:label "2D bond line structure"@en ; rdfs:subClassOf nmrcv:NMR:1000419 . nmrcv:NMR:1400221 a rdfs:Class ; rdfs:label "AMIX VIEWER & AMIX-TOOLS" ; rdfs:subClassOf nmrcv:NMR:1400214 . nmrcv:NMR:1400026 a rdfs:Class ; rdfs:label "irradiation frequency" ; rdfs:comment "def: The frequency of the RF radiation used to irradiate an NMR sample." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1000033 a rdfs:Class ; rdfs:label "Chloroform-d1"@en ; rdfs:subClassOf nmrcv:NMR:1000030 , nmrcv:NMR:1000431 . nmrcv:NMR:1400042 a rdfs:Class ; rdfs:label "NMR data processing" ; rdfs:comment "def: A data transformation that converts an NMR input data set into an output data set in a tracable and useful manner." ; rdfs:subClassOf . nmrcv:NMR:1000383 a rdfs:Class ; rdfs:label "JEOL Resonance 700MHz magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "cell" ; rdfs:comment "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." ; rdfs:subClassOf . nmrcv:NMR:1000352 a rdfs:Class ; rdfs:label "Bruker XWIN-NMR software"@en ; rdfs:subClassOf nmrcv:NMR:1000168 . nmrcv:NMR:1000077 a rdfs:Class ; rdfs:label "sodium trimethylsilyl-propionate"@en ; rdfs:subClassOf nmrcv:NMR:1000030 . a rdfs:Class ; rdfs:label "batch cell culture" ; rdfs:comment "continuous fermentation cell culture is a type of processed material which involved a bacterial or yeast cell stock grown in conditions such as nutrients are added at the begining of the culture process and products removed at the end." ; rdfs:subClassOf . nmrcv:NMR:1400219 a rdfs:Class ; rdfs:label "AURELIA software" ; rdfs:subClassOf nmrcv:NMR:1400214 . a rdfs:Class ; rdfs:label "uniformly labeled isotopic tracer"@en ; rdfs:comment "uniformly labeled isotopic tracer is an isotopic tracer where all atoms of the backbone are replaced with the same isotope. Such molecules are often used in Fluxomics analysis and metabolic path elucidation experiments."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "quality control material"@en ; rdfs:comment "quality control material (qc material) is a material entity which is used for the purpose to quality control processes such as assessing unwanted source of variations during signal acquisitions. Typically, these materials are known compounds or mixture of compounds introduced in known quantities into test samples or run as is, diluted from stock to provide reference measurements at fixed temporal intervals."@en ; rdfs:subClassOf . nmrcv:NMR:1000419 a rdfs:Class ; rdfs:label "2D topological molecule representation"@en ; rdfs:subClassOf nmrcv:NMR:1000864 . nmrcv:NMR:1000105 a rdfs:Class ; rdfs:label "shifted gaussian window function"@en ; rdfs:subClassOf nmrcv:NMR:1400070 . nmrcv:NMR:1000232 a rdfs:Class ; rdfs:label "global"@en ; rdfs:subClassOf nmrcv:NMR:1000227 . nmrcv:NMR:1000043 a rdfs:Class ; rdfs:label "post-acquisition solvent suppression"@en ; rdfs:subClassOf nmrcv:NMR:1400073 . nmrcv:NMR:1000292 a rdfs:Class ; rdfs:label "5mm standard tube"@en ; rdfs:subClassOf nmrcv:NMR:1000270 . nmrcv:NMR:1400129 a rdfs:Class ; rdfs:label "sample introduction parameter" ; rdfs:comment "tempdef: A sample introduction parameter is a parameter that describes the particular method of introducing the sample under investigation into the NMR instrument." ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1000376 a rdfs:Class ; rdfs:label "LC-NMR instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "stoichiometric coefficient"@en ; rdfs:comment "a stoichiometric coefficient is an information object which is part of an equation describing a chemical reaction and which corresponds to the number of molecules of a reactant taking part in a reaction."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "uncoated microplate" ; rdfs:comment "a uncoated microplate is a kind of microplate whom surface has not received any treatment and is uniquely made of polymer."@en ; rdfs:subClassOf . nmrcv:NMR:1000886 a rdfs:Class ; rdfs:label "protein name" ; rdfs:comment "A long name describing the function of the protein." ; rdfs:subClassOf nmrcv:NMR:1000884 . a rdfs:Class ; rdfs:label "spent culture medium"@en ; rdfs:comment "spent culture medium is a culture medium which has been added to a cell culture and which has been depleted of its component as used by the growing cell and which has received the by products of cell metabolites excreted by the cells. Therefore, spent culture medium will different significantly in pH and physical chemical properties from the initial fresh culture medium added to the cell as the begining of the cell culture. Spent culture medium is usually recovered by aspiration or mild centrifugation (as not to distrupt cell membrane) of the cell culture."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "isodyn"@en ; rdfs:comment """“Isodyn” is a C++-program that performs an analysis of stable isotope tracer data to assess metabolic flux profiles in living cells. Isodyn simulates the dynamics of isotopic isomer (isotopomer) distribution in central metabolic pathways, and, by changing its parameters, which reflect the characteristics of corresponding biochemical reactions, fit the simulated dynamics of mass isotopomers to that observed experimentally. The simulated metabolic fluxes that correspond to the best fit are assumed to reproduce the real fluxes in the analyzed biological object and conditions. Isodyn contains tools that check the goodness of fit and perform a statistical analysis of obtained metabolic fluxes. the source code is available from: https://github.com/seliv55/isodyn"""@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "documenting"@en ; rdfs:comment "a planned process in which a document is created or added to by including the specified input in it."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "degree Celsius" ; rdfs:comment "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K." ; rdfs:subClassOf . nmrcv:NMR:1000019 a rdfs:Class ; rdfs:label "sample pH"@en ; rdfs:subClassOf nmrcv:NMR:1002011 . a rdfs:Class ; rdfs:label "role"@en ; rdfs:comment "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en ; rdfs:subClassOf . nmrcv:NMR:1000247 a rdfs:Class ; rdfs:label "NMR pipe"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "extracellular flux"@en ; rdfs:comment "An extracellular flux is a metabolic flux indicating the rate of absortion or release of a molecular entity by a cell system from or to its surroundings, respectively."@en ; rdfs:subClassOf . nmrcv:NMR:1002018 a rdfs:Class ; rdfs:label "bin area" ; rdfs:comment "Bin area." ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1000394 a rdfs:Class ; rdfs:label "Varian Inova 500"@en ; rdfs:subClassOf nmrcv:NMR:1400236 . nmrcv:NMR:1400114 a rdfs:Class ; rdfs:label "NMR data pre-processing parameter set" ; rdfs:comment """defneed synonym: NMR data pre-processing parameter set""" ; rdfs:subClassOf nmrcv:NMR:1000630 . a rdfs:Class ; rdfs:label "error corrected data set"@en ; rdfs:comment "A data set that is produced as the output of an error correction data transformation and consists of producing a data set which has had erroneous contributions from the input to the data transformation removed (corrected for)."@en ; rdfs:subClassOf . nmrcv:NMR:1400204 a rdfs:Class ; rdfs:label "NMR tube washing system" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400001 . a rdfs:Class ; rdfs:label "milligram" ; rdfs:comment "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." ; rdfs:subClassOf . nmrcv:NMR:1000888 a rdfs:Class ; rdfs:label "unmodified peptide sequence" ; rdfs:comment "A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present." ; rdfs:subClassOf nmrcv:NMR:1000887 . a rdfs:Class ; rdfs:label "molecular_function" ; rdfs:comment "Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "alkylation"@en ; rdfs:comment "a kind of derivatization which results in the addition of alkyl group to molecules in an attempt to make ions derived from it more volatile in a gas-chromatography experiment."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "stable isotope ratio mass spectrometry" ; rdfs:comment "Mass spectrometry where the relative abundance of non-radioactive isotopes in a sample is determined." ; rdfs:subClassOf . nmrcv:NMR:1400053 a rdfs:Class ; rdfs:label "states-time proportional phase incrementation" ; rdfs:comment """def: A method for quadrature detection. synonym: S-TPPI""" ; rdfs:subClassOf nmrcv:NMR:1400048 . a rdfs:Class ; rdfs:label "targeted metabolite profiling"@en ; rdfs:comment "a kind of assay which attempts to identify and measure specific compound/ metabolites (known in advance) expressed as concentration or relative abundance ratio to a standard in a extract derived from a specimen using techniques such as gas chromatography mass spectrometry, liquid chromatography mass spectrometry, NMR spectroscopy or liquid chromatography DAD"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "fermenter" ; rdfs:comment "A container in which fermentation takes place."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "biological_process" ; rdfs:comment "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "dose" ; rdfs:comment "A measurement datum that measures the quantity of something that may be administered to an organism or that an organism may be exposed to. Quantities of nutrients, drugs, vaccines and toxins are referred to as doses." ; rdfs:subClassOf . nmrcv:NMR:1400048 a rdfs:Class ; rdfs:label "data encoding" ; rdfs:comment """tempdef: A data processing which alteres a data file for a specific purpose. defprov: Daniel Schober""" ; rdfs:subClassOf nmrcv:NMR:1400042 . a rdfs:Class ; rdfs:label "isotopomer data matrix" ; rdfs:comment "an isotopomer data matrix is a table resulting from the analysis of NMR data acquired in the context of tracer based studies and which contains information about chemical entity assignment" ; rdfs:subClassOf . nmrcv:NMR:1002007 a rdfs:Class ; rdfs:label "NMR spectrum" ; rdfs:comment """tempdef: A frequency sorted array of the NMR signal frequency components. Nuclei with different resonance frequencies will show up as peaks at different corresponding frequencies in the spectrum, or 'lines'. def: A NMR spectrum is a set of chemical shifts representing a chemical analysis. synonym: NMR spectrum""" ; rdfs:subClassOf nmrcv:NMR:1000524 . a rdfs:Class ; rdfs:label "phosphorus atom" ; rdfs:subClassOf . nmrcv:NMR:1400198 a rdfs:Class ; rdfs:label "Bruker NMR instrument" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400059 . a rdfs:Class ; rdfs:label "material maintenance" ; rdfs:comment "a process with that achieves the objective to maintain some or all of the characteristics of an input material over time" ; rdfs:subClassOf . nmrcv:NMR:1000568 a rdfs:Class ; rdfs:label "MD5" ; rdfs:comment "MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files." ; rdfs:subClassOf nmrcv:NMR:1000561 . a rdfs:Class ; rdfs:label "tracer analysis"@en ; rdfs:comment "a tracer analysis is a type of experimental procedure which relies on tracer molecules, usually non radioactive, to probe metabolic pathways and biochemical routes"@en ; rdfs:subClassOf . nmrcv:NMR:1000864 a rdfs:Class ; rdfs:label "chemical compound formula" ; rdfs:comment "A combination of symbols used to express the chemical composition of a compound." ; rdfs:subClassOf nmrcv:NMR:1000861 . nmrcv:NMR:1000431 a rdfs:Class ; rdfs:label "2H spectrum reference compound"@en ; rdfs:subClassOf nmrcv:NMR:1400033 . nmrcv:NMR:1000180 a rdfs:Class ; rdfs:label "spectral quantitation algorithm"@en ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1000225 a rdfs:Class ; rdfs:label "baseline correction using polynomial function"@en ; rdfs:subClassOf nmrcv:NMR:1400074 . a rdfs:Class ; rdfs:label "study design dependent variable"@en ; rdfs:comment "dependent variable specification is part of a study design. The dependent variable is the event studied and expected to change when the independent variable varies."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "enzyme"@en ; rdfs:comment """(protein or rna) or has_part (protein or rna) and has_function some GO:0003824 (catalytic activity)"""@en ; rdfs:subClassOf . nmrcv:NMR:1400135 a rdfs:Class ; rdfs:label "spectrum post-processing software" ; rdfs:comment "def: A software artifact used during spectral post-processing." ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "material component separation"@en ; rdfs:comment "a material processing in which components of an input material become segregated in space"@en ; rdfs:subClassOf . nmrcv:NMR:1000173 a rdfs:Class ; rdfs:label "pulse width"@en ; rdfs:subClassOf nmrcv:NMR:1000190 . nmrcv:NMR:1000134 a rdfs:Class ; rdfs:label "TALOS+ software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "metabolite" ; rdfs:comment "Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites." ; rdfs:subClassOf . nmrcv:NMR:1400149 a rdfs:Class ; rdfs:label "jump and return 1-1" ; rdfs:comment "tempdef: A jump and return 1-1 pulse sequence method is a jump and return method that uses one 90 degree pulse and one 90 degree return puls to make fast exchanging protons visible, first described by Plateau,P. and Gueron,M. (1982) J. Am. Chem. Soc., 104, 7310–7311. Compared to the 1-3-3-1 method it has a lower receiver gain and the dispersive tail of water interferes with the signals of interest." ; rdfs:subClassOf nmrcv:NMR:1400148 . nmrcv:NMR:1001924 a rdfs:Class ; rdfs:label "journal article keyword" ; rdfs:comment "Keyword present in a scientific publication." ; rdfs:subClassOf nmrcv:NMR:1000034 . nmrcv:NMR:1400150 a rdfs:Class ; rdfs:label "jump and return 1-3-3-1" ; rdfs:comment "tempdef:A jump and return 1-3-3-1 pulse sequence method is a jump and return method that uses a 1-3-3-1 pulse sequence to make fast exchanging protons visible. Compared to the 1-1 method it has better water suppression (higher receiver gain) capabilities, but with offset-dependent phase distortion (unsuitable for 2D)." ; rdfs:subClassOf nmrcv:NMR:1400148 . nmrcv:NMR:1400237 a rdfs:Class ; rdfs:label "Varian UNITY" ; rdfs:subClassOf nmrcv:NMR:1400234 . nmrcv:NMR:1000145 a rdfs:Class ; rdfs:label "library based computed concentration"@en ; rdfs:subClassOf nmrcv:NMR:1000137 . nmrcv:NMR:1000773 a rdfs:Class ; rdfs:label "Bruker FID format" ; rdfs:comment "file=xsd:IDREF." ; rdfs:subClassOf nmrcv:NMR:1000767 . a rdfs:Class ; rdfs:label "lipidomics investigation"@en ; rdfs:comment "lipidomics investigation is an investigation which aims at determining the lipid content of a biological system under given experimental conditions using data acquisition techniques such as mass spectrometry, nmr spectroscopy or chromatography techniques."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "study design execution" ; rdfs:comment "a planned process that carries out a study design" ; rdfs:subClassOf . nmrcv:NMR:1400064 a rdfs:Class ; rdfs:label "normalisation" ; rdfs:comment """normalization is a data transformation process which aims at making data seem roughly normally distributied by applying a mathematical function, which is most of time a continuous function. This is a row operation that is applied to the data from each sample and comprises methods to make the data from all samples directly comparable with each other. A common use is to remove or minimize the effects of variable dilution of the samples.""" ; rdfs:subClassOf nmrcv:NMR:1000079 . nmrcv:NMR:1001268 a rdfs:Class ; rdfs:label "programmer" ; rdfs:subClassOf nmrcv:NMR:1000010 . a rdfs:Class ; rdfs:label "disposition"@en ; rdfs:subClassOf . nmrcv:NMR:1000398 a rdfs:Class ; rdfs:label "Varian 400-MR NMR instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400234 . a rdfs:Class ; rdfs:label "solvent suppression pulse sequence" ; rdfs:comment "An NMR pulse sequence that is used to suppress or remove the solvent signal." ; rdfs:subClassOf . nmrcv:NMR:1000333 a rdfs:Class ; rdfs:label "Varian VNMRS 600"@en ; rdfs:subClassOf nmrcv:NMR:1000395 . nmrcv:NMR:1000004 a rdfs:Class ; rdfs:label "sample mass information" ; rdfs:comment "Total mass of sample used." ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1000243 a rdfs:Class ; rdfs:label "Spinworks NMR software"@en ; rdfs:subClassOf . nmrcv:NMR:1000149 a rdfs:Class ; rdfs:label "group time delay compensation"@en ; rdfs:comment "This is independent of the bruker acquisition parameter named \"GRPDLY\" (Group Delay), but this is a \"shift\" applied on the fid to calibrate its zero" ; rdfs:seeAlso ; rdfs:subClassOf nmrcv:NMR:1400041 . nmrcv:NMR:1000587 a rdfs:Class ; rdfs:label "contact address" ; rdfs:comment "Postal address of the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . nmrcv:NMR:1400031 a rdfs:Class ; rdfs:label "buffer information" ; rdfs:comment "def: A compound added to a sample to alter its pH value." ; rdfs:subClassOf nmrcv:NMR:1000548 . a rdfs:Class ; rdfs:label "protocol"@en ; rdfs:comment "A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process."@en ; rdfs:subClassOf . nmrcv:NMR:1000866 a rdfs:Class ; rdfs:label "molecular formula" ; rdfs:comment "A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked." ; rdfs:subClassOf nmrcv:NMR:1000418 . a rdfs:Class ; rdfs:label "total correlation spectroscopy" ; rdfs:comment "A type of homonuclear NMR spectroscopy which reveal correlations between all nuclei of a spin-system." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "information content entity" ; rdfs:comment "A generically dependent continuant that is about some thing."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "gas chromatography-mass spectrometry" ; rdfs:comment "Any method where a sample mixture is first separated by gas chromatography then ionised and characterised according to mass-to-charge ratio and relative abundance." ; rdfs:subClassOf . nmrcv:NMR:1400226 a rdfs:Class ; rdfs:label "JEOL NMR instrument" ; rdfs:subClassOf nmrcv:NMR:1400059 . a rdfs:Class ; rdfs:label "dilution series reference"@en ; rdfs:comment "a dilution series sample is a material entity which is part of a collection of such materials, each defined by its dilution factor with respect to a stock solution of reference sample. Dilution series samples are used to assess the linearity of the signal acquisition by providing a set of expected and known quantities."@en ; rdfs:subClassOf . nmrcv:NMR:1000204 a rdfs:Class ; rdfs:label "magnitude value type"@en ; rdfs:subClassOf nmrcv:NMR:1000202 . a rdfs:Class ; rdfs:label "multiple testing correction method"@en ; rdfs:comment "A multiple testing correction method is a hypothesis test performed simultaneously on M > 1 hypotheses. Multiple testing procedures produce a set of rejected hypotheses that is an estimate for the set of false null hypotheses while controlling for a suitably define Type I error rate" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Hadamard-encoded nuclear magnetic resonance spectroscopy" ; rdfs:comment "An NMR experiment in which multiple frequencies in an NMR spectrum are excited simultaneously over a broad frequency rnage using polychromatic pulses." ; rdfs:subClassOf . nmrcv:NMR:1000214 a rdfs:Class ; rdfs:label "creatinine"@en ; rdfs:comment "will be further specified via a concentration value" ; rdfs:subClassOf nmrcv:NMR:1000167 . nmrcv:NMR:1000091 a rdfs:Class ; rdfs:label "commercial NMR software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "contain function"@en ; rdfs:comment "A contain function is a function to constrain a material entities location in space"@en ; rdfs:subClassOf . nmrcv:NMR:1400295 a rdfs:Class ; rdfs:label "JEOL EX format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "material sample role" ; rdfs:comment "A material sample role is a specimen role borne by a material entity that is the output of a material sampling process." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "cell freezing medium"@en ; rdfs:comment "A processed material that serves as a liquid vehicle for freezing cells for long term quiescent stroage, which contains chemicls needed to sustain cell viability across freeze-thaw cycles. " ; rdfs:subClassOf . nmrcv:NMR:1000109 a rdfs:Class ; rdfs:label "pure shift 1D Zangger-Sterk pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1000108 . a rdfs:Class ; rdfs:label "cell scraping" ; rdfs:comment "cell scraping is a material component separation technique which uses mechanism means (as opposed to enzymatic ones) to detach cultured cells from the growth substrate. The technique is thought to be more aggressive and cause cellular breakage but has the benefit of avoiding use of enzymes, which may have their own side effects on cellular content."@en ; rdfs:subClassOf . nmrcv:NMR:1400097 a rdfs:Class ; rdfs:label "line broadening" ; rdfs:comment """line broadening is a process resulting in spectral peak signal becoming hard to interpret and analysed. Line broadening is affected by spin-spin relaxation and/or spin-lattice relaxation processes. When relaxation is very fast, NMR lines are broad, J-coupling may not be resolved or the signal may even be difficult or impossible to detect. The maximum repetition rate during acquisition of an NMR signal is governed by T1 - short T1 means the magnetization recovers more rapidly, and a spectrum can be acquired in less time. Line broadening may be caused by: Sample inhomogeneity (poor mixing. solid particles), Temperature gradients across sample, Paramagnetic impurities.""" ; rdfs:subClassOf nmrcv:NMR:1000021 . nmrcv:NMR:1000359 a rdfs:Class ; rdfs:label "uniform bucketing"@en ; rdfs:subClassOf nmrcv:NMR:1400138 . a rdfs:Class ; rdfs:label "Vertebrata " ; rdfs:subClassOf . nmrcv:NMR:1000318 a rdfs:Class ; rdfs:label "Bruker NMR spectrum file"@en ; rdfs:subClassOf nmrcv:NMR:1000317 . nmrcv:NMR:1000253 a rdfs:Class ; rdfs:label "Madison Metabolomics Consortium Database MMCD identifier"@en ; rdfs:comment "PRS: rename 'identifyer' to 'identifier'"@en ; rdfs:subClassOf nmrcv:NMR:1000022 . nmrcv:NMR:1000402 a rdfs:Class ; rdfs:label "Varian Mercury 400"@en ; rdfs:subClassOf nmrcv:NMR:1400235 . nmrcv:NMR:1000264 a rdfs:Class ; rdfs:label "Bruker FID file"@en ; rdfs:subClassOf nmrcv:NMR:1400119 . a rdfs:Class ; rdfs:label "metabolism quenching using precooled 60 percent methanol ammonium bicarbonate buffer" ; rdfs:comment "a type of metabolism extinction which uses refrigerated buffer containing 60% of methanol ammonium bicarbonate solution"@en ; rdfs:subClassOf . nmrcv:NMR:1000032 a rdfs:Class ; rdfs:label "instrument customization" ; rdfs:comment "Free text description of a single customization made to the instrument; for several modifications, use several entries." ; rdfs:subClassOf nmrcv:NMR:1000496 . nmrcv:NMR:1000167 a rdfs:Class ; rdfs:label "concentration standard"@en ; rdfs:subClassOf nmrcv:NMR:1400032 . a rdfs:Class ; rdfs:label "protein complex" ; rdfs:comment "Any macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "pyridine" ; rdfs:comment "An azaarene comprising a benzene core in which one -CH group is replaced by a nitrogen atom. It is the parent compound of the class pyridines." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "assignment by database search" ; rdfs:comment "assignment by database search is a type of chemical entity assignment which relies on probing chemical electronic libraries and chemical databases to determine matching structure and thereby attempt to assign a chemical identity. Searches may rely on InChi string or keys for instance." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nuclear magnetic resonance spectroscopy" ; rdfs:comment "Spectroscopy where the energy states of spin-active nuclei placed in a static magnetic field are interrogated by inducing transitions between the states via radio frequency irradiation." ; rdfs:subClassOf . nmrcv:NMR:1400187 a rdfs:Class ; rdfs:label "UltraShield" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400186 . a rdfs:Class ; rdfs:label "long term reference role"@en ; rdfs:comment "long term reference role is a role played by a material entity known for its stability to provide the means to compare across sets of acquisitions"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "drawing a conclusion based on data"@en ; rdfs:comment "A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "high dose"@en ; rdfs:comment "high dose is a dose specifically set to trigger strong response in the system it is administered to, those effects may be toxic. Also, the denomination allows a discrete, categorical classification of the dose points, irrespective of the actual quantity administered thereby allowing to capture the intent of the operator, something which is not necessary explicit when reading the quantitative dose reading (specific to a chemical entity and a system)." ; rdfs:subClassOf . nmrcv:NMR:1400208 a rdfs:Class ; rdfs:label "SampleJet" ; rdfs:comment """def: Bruker BioSpin introduces the SampleJet, a robot for NMR tube automation. The SampleJet has been consciously designed to meet the growing customer demand for simplicity, versatility and higher throughput in NMR sample tube automation. The SampleJet utilizes the modern-day industry standard for sample arrangements—the 96 well plate array. Therefore, the samples may be handled by standard lab automation devices before or after the NMR measurement. defprov: Bruker website""" ; rdfs:subClassOf nmrcv:NMR:1400209 . a rdfs:Class ; rdfs:label "one-dimensional spatial region"@en ; rdfs:subClassOf . nmrcv:NMR:1400049 a rdfs:Class ; rdfs:label "G matrix fourier transform projection" ; rdfs:comment """tempdef:GFT NMR allows for rapid multidimensional FT NMR spectral information gathering, avoiding sampling limitations without compromising on the precision of chemicalshift. defprov: ttp://www.nsm.buffalo.edu/Research/GFT/szyperski_publications_1st_page/Szyperski%2067.pdf synonym: GFT-projection""" ; rdfs:subClassOf nmrcv:NMR:1400075 . a rdfs:Class ; rdfs:label "derivatization agent role"@en ; rdfs:comment "derivatization agent role is a role played by a chemical entity involved in a chemical reaction known as derivatization whereby another chemical entity is augmented, but not altered otherwise, with groups specify to the chemical entity acting as a derivatization agent."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "collection at cytostatic phase"@en ; rdfs:comment "a process of collecting a sample when the cells of a cell culture growth are not dividing"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "study reference material"@en ; rdfs:comment "a study reference sample is a pool made up of aliquots from all the sample collected in a given study. It is meant to be used to monitor intra study variability, also known as within study variability of the signal acquisition, for instance between batches of such data acquisition."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "dideuterium oxide" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolite quantitation using high performance liquid chromatography"@en ; rdfs:comment "A kind of assay which attempts to identify and measure relative concentration of all possible metabolites using the method high-performance liquid chromatography (HPLC; formerly referred to as high-pressure liquid chromatography), is a technique in analytical chemistry used to separate, identify, and quantify each component in a mixture."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "kelvin" ; rdfs:comment "A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "mass isotopomer fractional abundance"@en ; rdfs:comment """mass isotopomer fractional abundance is a measurement data item corresponding to the following: the most abundant species is given the value 100 and all other species are normalized relative to 100 and expressed as percent relative abundance. fractional abundance of Mx=Ax= (abundance Mx) / ∑(i=0..n) abundance Mi, where Mx represents mass isotopomer Mx. """@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "container" ; rdfs:comment "A device that can be used to restrict the location of material entities over time" ; rdfs:subClassOf . nmrcv:NMR:1400107 a rdfs:Class ; rdfs:label "NMR quality check parameter set" ; rdfs:comment """tempdef: A nuclear magnetic resonance spectroscopy quality check parameter set is a parameter set used for the quality check method for an NMR analysis synonym: NMR quality check parameter set""" ; rdfs:subClassOf nmrcv:NMR:1400106 . nmrcv:NMR:1000416 a rdfs:Class ; rdfs:label "SLN-Tripos"@en ; rdfs:subClassOf nmrcv:NMR:1000418 . a rdfs:Class ; rdfs:label "isotope natural abundance correction"@en ; rdfs:comment "natural abundance correction is a data transformation which aims to take into account the contribution of natural random variation in isotopic composition in the environment and adjust for it during the calculation of mass isotopologue distribution in a tracer based metabolomics experiment"@en ; rdfs:subClassOf . nmrcv:NMR:1400124 a rdfs:Class ; rdfs:label "NMR sample identifier" ; rdfs:comment """def: A reference to information on the provenance of the NMR sample. synonym: NMR sample reference""" ; rdfs:subClassOf nmrcv:NMR:1000878 . a rdfs:Class ; rdfs:label "mass measurement datum"@en ; rdfs:comment "A scalar measurement datum that is the result of measurement of mass quality"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Benjamini and Yekutieli false discovery rate correction method"@en ; rdfs:comment "A data transformation in which the Benjamini and Yekutieli method is applied with the aim of correcting false discovery rate" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "collection at stabilization phase before experiment"@en ; rdfs:comment "collection at stabilization phase before experiment is a kind of specimen collection process which takes places once cells have reached a stationary growth phase and prior the main experimental intervention is applied."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "entity"@en . a rdfs:Class ; rdfs:label "protein identifier"@en ; rdfs:comment "a centrally registered identifier to denote a molecular entity of the type Protein."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "NOAEL dose"@en ; rdfs:comment "noael dose is a dose defined as the highest experimental point that is without adverse effect."@en ; rdfs:subClassOf . nmrcv:NMR:1000177 a rdfs:Class ; rdfs:label "x end value"@en ; rdfs:comment "tempdef: The end value for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum." ; rdfs:subClassOf nmrcv:NMR:1000013 . a rdfs:Class ; rdfs:label "catalytic activity" ; rdfs:comment "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Homo sapiens" ; rdfs:subClassOf . a rdf:Property ; rdfs:label "is member of organization" ; rdfs:comment "Relating a legal person or organization to an organization in the case where the legal person or organization has a role as member of the organization." ; rdfs:range . nmrcv:NMR:1000011 a rdfs:Class ; rdfs:label "data file attribute"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "time sampled measurement data set"@en ; rdfs:comment "A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "passage number"@en ; rdfs:comment "passage number is a measurement data item denoting how many times a cell culture has been split and transferred to a new culture vessel. It can also be considered to be equivalent to how many times a cell culture has reached 100% confluence"@en ; rdfs:subClassOf . nmrcv:NMR:1400090 a rdfs:Class ; rdfs:label "relaxation delay" ; rdfs:comment "def: The delay between repeat scans to allow nuclei to relax back to their steady state." ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "lipid" ; rdfs:comment "'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids." ; rdfs:subClassOf . nmrcv:NMR:1000050 a rdfs:Class ; rdfs:label "solid" ; rdfs:comment "State if the sample is in solid form." ; rdfs:subClassOf nmrcv:NMR:1000003 . nmrcv:NMR:1000891 a rdfs:Class ; rdfs:label "heavy labeled peptide" ; rdfs:comment "A peptide that has been created or labeled with some heavier-than-usual isotopes." ; rdfs:subClassOf nmrcv:NMR:1000887 . nmrcv:NMR:1000307 a rdfs:Class ; rdfs:label "exponentially damped J-modulation window function"@en ; rdfs:comment """Functional form: jmod(x_i) = exp(-e)*sin( pi*off + pi*(end-off)*i/(size-1)) Parameters: * data Array of spectral data. * e Exponential term. * off Start of modulation in fraction of pi radians. * end End of modulation in fraction of pi radians. * inv Set True for inverse apodization""" ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1000184 a rdfs:Class ; rdfs:label "doublet feature"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . nmrcv:NMR:1000061 a rdfs:Class ; rdfs:label "trimethyl phosphate"@en ; rdfs:subClassOf nmrcv:NMR:1000058 . nmrcv:NMR:1400233 a rdfs:Class ; rdfs:label "CapNMR probe" ; rdfs:subClassOf nmrcv:NMR:1400232 . nmrcv:NMR:1400277 a rdfs:Class ; rdfs:label "LC MS NMR" ; rdfs:comment "Includes the connection to a high-resolution TOF-LC-MS system." ; rdfs:subClassOf nmrcv:NMR:1400276 . a rdfs:Class ; rdfs:label "disease-specific research and clinical care" ; rdfs:comment "This primary category consent code indicates that use is allowed provided it is related to the specified disease." ; rdfs:subClassOf . nmrcv:NMR:1000083 a rdfs:Class ; rdfs:label "scaling by generalized logarithmic transformation"@en ; rdfs:subClassOf nmrcv:NMR:1000080 . nmrcv:NMR:1000095 a rdfs:Class ; rdfs:label "concentration of chemical compound"@en ; rdfs:subClassOf nmrcv:NMR:1000861 . nmrcv:NMR:1400322 a rdfs:Class ; rdfs:label "acdlabs" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "material sampling process" ; rdfs:comment "A specimen gathering process with the objective to obtain a specimen that is representative of the input material entity" ; rdfs:subClassOf . nmrcv:NMR:1001457 a rdfs:Class ; rdfs:label "data processing software" ; rdfs:comment "Conversion software." ; rdfs:subClassOf . nmrcv:NMR:1000018 a rdfs:Class ; rdfs:label "heavy water"@en ; rdfs:subClassOf nmrcv:NMR:1000330 . nmrcv:NMR:1000257 a rdfs:Class ; rdfs:label "trafs window function"@en ; rdfs:subClassOf nmrcv:NMR:1400068 . a rdfs:Class ; rdfs:label "q-value" ; rdfs:comment """A quantitative confidence value that measures the minimum false discovery rate that is incurred when calling that test significant. To compute q-values, it is necessary to know the p-value produced by a test and possibly set a false discovery rate level."""@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "process" ; rdfs:comment "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en ; rdfs:subClassOf . nmrcv:NMR:1400121 a rdfs:Class ; rdfs:label "shaped pulse file" ; rdfs:comment "def: A reference to a file containing a specfication of the shape of an excitation pulse." ; rdfs:subClassOf nmrcv:NMR:1400122 . a rdfs:Class ; rdfs:label "derivatization"@en ; rdfs:comment """derivatization is a technique used in chemistry which transforms a chemical compound into a product (the reaction's derivate) of similar chemical structure, called a derivative. That compound has properties more amenable to a particular analytical method. Some samples analyzed by GC require derivatization in order to make them suitable for analysis. Compounds that have poor volatility, poor thermal stability, or that can be adsorbed in the injector will exhibit nonreproducible peak areas, heights, and shapes. Other compounds that respond poorly on a specific detector may need to be “tagged” with a different functional group to improve detection.""" ; rdfs:subClassOf . nmrcv:NMR:1400075 a rdfs:Class ; rdfs:label "spectral projection" ; rdfs:comment "A method of spectral projection." ; rdfs:subClassOf nmrcv:NMR:1400048 . a rdfs:Class ; rdfs:label "water elimination Fourier transform" ; rdfs:comment "A pulse cluster used to suppress solvent (water) signals exploiting the differing relaxation properties of solvent and sample. Resonances are inverted and the subsequent recovery period is chosen such that the solvent signal is at a null point when the signal is detected. For the pulse sequence see J. Chem. Phys., (1972), 56, pg 3182." ; rdfs:subClassOf . nmrcv:NMR:1000590 a rdfs:Class ; rdfs:label "contact organization" ; rdfs:comment "Home institution of the contact person." ; rdfs:subClassOf nmrcv:NMR:1000585 . nmrcv:NMR:1000427 a rdfs:Class ; rdfs:label "Tanimoto similarity"@en ; rdfs:subClassOf nmrcv:NMR:1000426 . nmrcv:NMR:1000022 a rdfs:Class ; rdfs:label "metabolomics database identifier"@en ; rdfs:comment "PRS: rename 'reference' to 'identifier'"@en ; rdfs:subClassOf nmrcv:NMR:1000878 . nmrcv:NMR:1000108 a rdfs:Class ; rdfs:label "Zangger-Sterk pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1400037 . a rdfs:Class ; rdfs:label "action specification"@en ; rdfs:comment "a directive information entity that describes an action the bearer will take"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "not-for-profit use only" ; rdfs:comment "This requirement indicates that use is limited to not-for-profit organizations." ; rdfs:subClassOf . nmrcv:NMR:1000329 a rdfs:Class ; rdfs:label "AB multiplet pattern"@en ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1400001 a rdfs:Class ; rdfs:label "optional part of NMR instrument" ; rdfs:comment """def: Part of an NMR instrument which is not cardinally important and hence optional / facultative for the proper intended function of the instrument. synonym: optional part of NMR instrument clsdel: ontologically there is no such universal which characteristic is a possible (!) state of being a part of something...""" ; rdfs:subClassOf nmrcv:NMR:1000463 . a rdfs:Class ; rdfs:label "metabolite extraction"@en ; rdfs:comment "metabolite extraction is an extraction process which aims to retrieve small molecules known as metabolites, from a specimen"@en ; rdfs:subClassOf . nmrcv:NMR:1400172 a rdfs:Class ; rdfs:label "diffusion edited pulse sequence" ; rdfs:comment """defneed synonym: 1D diffusion edited""" ; rdfs:subClassOf nmrcv:NMR:1400169 . a rdfs:Class ; rdfs:label "acetonitrile" ; rdfs:comment "A nitrile that is hydrogen cyanide in which the hydrogen has been replaced by a methyl group." ; rdfs:subClassOf . nmrcv:NMR:1000382 a rdfs:Class ; rdfs:label "JEOL Resonance 600MHz magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "reference and adduct corrected m/z" ; rdfs:comment "a m over z ratio which underwent a correction data transformation that takes into account the signal obtained from a reference compound, its spectral characteristics as well as the contributions caused by adducts generated during the ionization process." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolite identifier"@en ; rdfs:comment "a centrally registered identifier to denote a metabolite chemical entity"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "independent continuant"@en ; rdfs:comment "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "line graph"@en ; rdfs:comment """A line graph is a type of graph created by connecting a series of data points together with a line."""@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "conclusion based on data" ; rdfs:comment "An information content entity that is inferred from data." ; rdfs:subClassOf . a rdf:Property ; rdfs:label "is_supported_by_data" ; rdfs:comment "The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process" ; rdfs:domain ; rdfs:range . nmrcv:NMR:1400083 a rdfs:Class ; rdfs:label "acquisition nucleus" ; rdfs:comment "def: The nucleus of an element or isotope that is being studied during an NMR analysis. Common NMR requirements include direct 1D and 2D proton-only NMR, direct observation of 13C NMR with 1H decoupling, direct observation of other nuclei such as 19F, 31P, 29Si, 31P, 27Al, and 15N (with or without 1H decoupling), triple resonance NMR (especially inverse triple resonance such as 1H observe, 13C and 15N decouple), and inverse 2D and 3D experiments such as HMQC and HMBC." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "two-dimensional continuant fiat boundary"@en ; rdfs:subClassOf . nmrcv:NMR:1000102 a rdfs:Class ; rdfs:label "sinc window multiplication of FID (1D)"@en ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1000268 a rdfs:Class ; rdfs:label "shaped tube"@en ; rdfs:subClassOf nmrcv:NMR:1000271 . nmrcv:NMR:1000371 a rdfs:Class ; rdfs:label "AVANCE III HD"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1400299 a rdfs:Class ; rdfs:label "Felix format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000452 a rdfs:Class ; rdfs:label "NMR data conversion" ; rdfs:comment "Terms used to describe types of data processing." ; rdfs:subClassOf nmrcv:NMR:1000530 . nmrcv:NMR:1400266 a rdfs:Class ; rdfs:label "JS Research" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "Opisthokonta" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "heteronuclear two-dimensional nuclear magnetic resonance spectroscopy" ; rdfs:comment "Any type of heteronuclear NMR spectroscopy where a second frequency dimension is employed." ; rdfs:subClassOf . nmrcv:NMR:1000199 a rdfs:Class ; rdfs:label "NMR spectrum by pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . a rdfs:Class ; rdfs:label "metabolism quenching by snap freezing in liquid nitrogen" ; rdfs:comment "metabolism quenching by snap freeing in liquid nitrogen is a kind biochemical reaction extinction process which relies on extremely low temperature afforded by nitrogen in liquid state to denature enzymatic machinery of live cells or live tissue and inactivate it." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "oxygen-17 atom" ; rdfs:comment "The stable isotope of oxygen with relative atomic mass 16.999131. The least abundant (0.038 atom percent) isotope of naturally occurring oxygen." ; rdfs:subClassOf . nmrcv:NMR:1400143 a rdfs:Class ; rdfs:label "watergate" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400037 . nmrcv:NMR:1000275 a rdfs:Class ; rdfs:label "JEOL ECX magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "center calculation objective"@en ; rdfs:comment "A center calculation objective is a data transformation objective where the aim is to calculate the center of an input data set."@en ; rdfs:subClassOf . nmrcv:NMR:1400311 a rdfs:Class ; rdfs:label "Waters" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "isotopomer analysis" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "openMoebius"@en ; rdfs:comment """OpenMoebius is an integrated software for conventional 13C-Metabolic Flux Analysis and isotopically nonstationary 13C-Metabolic Flux Analysis (INST-13C-MFA). This work is partially supported by JST, Strategic International Collaborative Research Program, SICORP for JP-US Metabolomics. """@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "detecting sample degradation event"@en ; rdfs:comment "detecting sample degradation event is a quality control process which aims to determine if measurements in samples are affected by their run order or time of acquisition. This is usually assessed by running the same analytical samples at different points along the data acquistion plan (technical replication at the begining and end of runs)."@en ; rdfs:subClassOf . nmrcv:NMR:1000881 a rdfs:Class ; rdfs:label "chemical compound" ; rdfs:comment "A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight." ; rdfs:subClassOf . nmrcv:NMR:1400061 a rdfs:Class ; rdfs:label "NMR instrument acquisition parameter set" ; rdfs:comment """def: The list of parameters that describe the instrument settings used for the acquisition of a spectrum. altdef: The set of variables dependent on a given pulse sequence that will be optimised in order to acquire a spectrum. synonym: NMR instrument acquisition parameter set""" ; rdfs:subClassOf nmrcv:NMR:1400196 . nmrcv:NMR:1000188 a rdfs:Class ; rdfs:label "cluster of peaks across samples"@en ; rdfs:comment "a set of peaks that are highly correlated in a series of samples" ; rdfs:subClassOf nmrcv:NMR:1000524 . a rdfs:Class ; rdfs:label "assessing instrument conditioning"@en ; rdfs:comment "assessing instrument conditionning is a quality control process which aims at monitoring the stability of the analytical instrument prior to running data acquisition on specimen of interest by running a set of control runs."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "culture medium"@en ; rdfs:comment "a processed material that provides the needed nourishment for microorganisms or cells grown in vitro." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "averaging data transformation"@en ; rdfs:comment "An averaging data transformation is a data transformation that has objective averaging."@en ; rdfs:subClassOf . nmrcv:NMR:1000001 a rdfs:Class ; rdfs:label "sample number" ; rdfs:comment "A reference number relevant to the sample under study." ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1002011 a rdfs:Class ; rdfs:label "pH" ; rdfs:comment "pH." ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1400165 a rdfs:Class ; rdfs:label "1D NMR acquisition parameter set" ; rdfs:comment """defneed synonym: 1D NMR acquisition parameter set""" ; rdfs:subClassOf nmrcv:NMR:1400061 . a rdfs:Class ; rdfs:label "data transformation objective"@en ; rdfs:comment "An objective specification to transformation input data into output data"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "normalized corrected peak area" ; rdfs:comment "a normalized corrected peak area is a type of peak area which is produced followed a normalization data transformation and correction in order to make spectra comparable." ; rdfs:subClassOf . nmrcv:NMR:1400284 a rdfs:Class ; rdfs:label "fourier transformation NMR instrument" ; rdfs:comment """In FT-NMR, all frequencies in a spectrum are irradiated simultaneously with a radio frequency pulse. Following the pulse, the nuclei return to thermal equilibrium. A time domain emission signal is recorded by the instrument as the nuclei relax. A frequency domain spectrum is obtained by Fourier transformation. Defprov: http://teaching.shu.ac.uk/hwb/chemistry/tutorials/molspec/nmr3.htm""" ; rdfs:subClassOf nmrcv:NMR:1000012 . nmrcv:NMR:1000113 a rdfs:Class ; rdfs:label "NMR Star 3.1 file format"@en ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "two-dimensional spatial region"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "exponentially fed-batch culture reactor"@en ; rdfs:comment "an exponentially fed-batch culture reactor is a device which deliver the ability to grow cells in a way non too dissimilar to that of a chemostat based culture, meaning that the cells are in a quasi steady-state condition."@en ; rdfs:subClassOf . nmrcv:NMR:1400210 a rdfs:Class ; rdfs:label "B-ACS" ; rdfs:comment """def: The Bruker Automatic Sample Changer (B-ACS 60/120), used in conjunction with Bruker DISNMR, UXNMR or XWIN-NMR software, provides dialog-guided facilities which allow the user to easily and effectively perform automatic (continuous) experiments. Features include a 60 or 120 sample capacity, random accessing of samples, positive sample identification with the optional bar code reader, and temperature control of individual samples with the optional sample heater unit. defprov: Bruker website""" ; rdfs:subClassOf nmrcv:NMR:1400209 . nmrcv:NMR:1000348 a rdfs:Class ; rdfs:label "NMR sampling strategy"@en ; rdfs:comment "a type of data acquisition parameter (when recording the FID) which can be continuous/uniform or sparse/non-uniform signal acquisition." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1002000 a rdfs:Class ; rdfs:label "HMDB identifier" ; rdfs:comment "A unique identifier for a metabolite in the HMDB database (HMDB00001)." ; rdfs:subClassOf nmrcv:NMR:1000022 . a rdfs:Class ; rdfs:label "three-dimensional spatial region"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "categorical value specification" ; rdfs:comment "A value specification that is specifies one category out of a fixed number of nominal categories" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "uniformly-labeled [U-13C] glucose"@en ; rdfs:comment """A non-radioactive, glucose molecule in which all six carbons are substituted with stable carbon 13 (13C) isotope, with potential imaging application or fluxomics studies. CAS RN 110187-42-3"""@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "molecular entity" ; rdfs:comment "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity." ; rdfs:subClassOf . nmrcv:NMR:1400244 a rdfs:Class ; rdfs:label "NMR imaging probe" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1000059 a rdfs:Class ; rdfs:label "phosphoric acid"@en ; rdfs:subClassOf nmrcv:NMR:1000058 . nmrcv:NMR:1400254 a rdfs:Class ; rdfs:label "vendor" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000010 . nmrcv:NMR:1000489 a rdfs:Class ; rdfs:label "Varian/Agilent instrument model" ; rdfs:comment "Varian instrument model." ; rdfs:subClassOf nmrcv:NMR:1000031 . nmrcv:NMR:1400072 a rdfs:Class ; rdfs:label "sine squared window" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400071 . nmrcv:NMR:1000195 a rdfs:Class ; rdfs:label "quintet feature"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . nmrcv:NMR:1400096 a rdfs:Class ; rdfs:label "window function parameter" ; rdfs:comment "def: A parameter to a window function." ; rdfs:subClassOf nmrcv:NMR:1400101 . a rdfs:Class ; rdfs:label "consent code secondary category" ; rdfs:comment "A categorical data item indicating the secondary category the consent code belongs to according to Dyke et al. 2016." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "normalization to the mean"@en ; rdfs:comment "a normalization process which relies on the computing to arithmetic mean signal intensity over all measurements (controls and samples) and then for each sample measurements, adjusting the signal with the mean (by substracting the mean, allowing to retain measurement unit, which is not the case with dividing with the mean). The arithmetic mean is used as reference to which sample signals are then compared."@en ; rdfs:subClassOf . nmrcv:NMR:1000087 a rdfs:Class ; rdfs:label "MetaboLab software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000072 a rdfs:Class ; rdfs:label "peak integration"@en ; rdfs:subClassOf nmrcv:NMR:1000015 . nmrcv:NMR:1000387 a rdfs:Class ; rdfs:label "Avance I spectrometer"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1000236 a rdfs:Class ; rdfs:label "5mm HCN probe"@en ; rdfs:subClassOf nmrcv:NMR:1000237 . nmrcv:NMR:1400086 a rdfs:Class ; rdfs:label "quality check peak feature" ; rdfs:comment "def: A feature of a peak that is measured to assess the quality of a data set." ; rdfs:subClassOf nmrcv:NMR:1400107 . a rdfs:Class ; rdfs:label "DNA content"@en ; rdfs:comment """the amount of dideoxyribonucleic acids present in a cell culture or tissue. """@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "detecting carry over event"@en ; rdfs:comment "detecting carry over event is a quality control process which aims to determine if measurements in one sample are affected to earlier measurements made on different samples and indicative of insufficient matrix regeneration between 2 data acquisition events. this is usually assessed by running solvent blanks or sample preparation blank between analytical runs."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "center calculation data transformation"@en ; rdfs:comment "A center calculation data transformation is a data transformation that has objective of center calculation."@en ; rdfs:subClassOf . nmrcv:NMR:1400006 a rdfs:Class ; rdfs:label "multiplicity feature" ; rdfs:subClassOf nmrcv:NMR:1000231 . nmrcv:NMR:1002014 a rdfs:Class ; rdfs:label "binned spectrum descriptor" ; rdfs:comment "A bin for a spectrum." ; rdfs:subClassOf nmrcv:NMR:1000172 . nmrcv:NMR:1000390 a rdfs:Class ; rdfs:label "General Electric"@en ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "research use only" ; rdfs:comment "This secondary category consent code indicates that use is limited to research purposes (e.g., does not include its use in clinical care)." ; rdfs:subClassOf . nmrcv:NMR:1000887 a rdfs:Class ; rdfs:label "peptide attribute" ; rdfs:comment "An nonphysical attribute that can be used to describe a peptide." ; rdfs:subClassOf nmrcv:NMR:1000547 . nmrcv:NMR:1001271 a rdfs:Class ; rdfs:label "researcher" ; rdfs:subClassOf nmrcv:NMR:1000010 . nmrcv:NMR:1000297 a rdfs:Class ; rdfs:label "Norell tube"@en ; rdfs:subClassOf nmrcv:NMR:1400132 . a rdfs:Class ; rdfs:label "biotin" ; rdfs:comment "An organic heterobicyclic compound that consists of 2-oxohexahydro-1H-thieno[3,4-d]imidazole having a valeric acid substituent attached to the tetrahydrothiophene ring. The parent of the class of biotins." ; rdfs:subClassOf . nmrcv:NMR:1000029 a rdfs:Class ; rdfs:label "tetramethylsilane"@en ; rdfs:subClassOf nmrcv:NMR:1000026 , nmrcv:NMR:1000030 . a rdfs:Class ; rdfs:label "survival rate" ; rdfs:comment "A measurement data that represents the percentage of people or animals in a study or treatment group who are alive for a given period of time after diagnosis or initiation of monitoring." ; rdfs:subClassOf . nmrcv:NMR:1000206 a rdfs:Class ; rdfs:label "imaginary value type"@en ; rdfs:subClassOf nmrcv:NMR:1000202 . nmrcv:NMR:1400094 a rdfs:Class ; rdfs:label "x start value" ; rdfs:comment """def: The starting value for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum. altdef: The initial time or frequency a FID or spectrum is recorded from.""" ; rdfs:subClassOf nmrcv:NMR:1000013 . nmrcv:NMR:1400038 a rdfs:Class ; rdfs:label "frequency domain data processing"@en ; rdfs:comment "def: Automatic or manual procedures performed upon pre-processed NMR data sets that aim to summarise them or annotate them with speculative values." ; rdfs:subClassOf nmrcv:NMR:1400042 . a rdfs:Class ; rdfs:label "nitrogen-15 atom" ; rdfs:comment "The stable isotope of nitrogen with relative atomic mass 15.000109. The least abundant (0.368 atom percent) isotope of naturally occurring nitrogen." ; rdfs:subClassOf . nmrcv:NMR:1400215 a rdfs:Class ; rdfs:label "Bruker TopSpin software" ; rdfs:subClassOf nmrcv:NMR:1400214 . a rdfs:Class ; rdfs:label "chemical entity" ; rdfs:comment "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "plan specification"@en ; rdfs:comment "A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "one-dimensional continuant fiat boundary"@en ; rdfs:subClassOf . nmrcv:NMR:1000296 a rdfs:Class ; rdfs:label "Wilmad precision tube"@en ; rdfs:subClassOf nmrcv:NMR:1000278 . nmrcv:NMR:1400262 a rdfs:Class ; rdfs:label "sample temperature information" ; rdfs:comment "def: In some cases, it is necessary or advisable to control the temperature of the sample at some value other than ambient. The sample may be only slightly solubility at room temperatures, or it may be desirable to control some aspect of the dynamics of the system. In such cases, a default temperature, or some means of selecting this parameter, can be built into the experiment." ; rdfs:subClassOf nmrcv:NMR:1000548 . a rdfs:Class ; rdfs:label "total volume of cell culture"@en ; rdfs:comment "total volume of cell culture is a measurement data item which denotes the volume occupied by a cell culture"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "maintaining cell culture"@en ; rdfs:comment "a protocol application in which cells are kept alive in a defined environment outside of an organism. part of cell_culturing"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "analyte assay"@en ; rdfs:comment "An assay with the objective to capture information about the presence, concentration, or amount of an analyte in an evaluant."@en ; rdfs:subClassOf . nmrcv:NMR:1000286 a rdfs:Class ; rdfs:label "5mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . a rdfs:Class ; rdfs:label "tesla" ; rdfs:comment "A magnetic flux density unit which is equal to one weber per square meter." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "continuous fermentation cell culture"@en ; rdfs:comment "continuous fermentation cell culture is a type of processed material which involved a bacterial or yeast cell stock grown in conditions such as nutrients are added and product removed at a steady rate throughout the culture process. This is usually achieved using the specific type of fermenter known as a fed-batch culture reactor)." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "geographical restriction" ; rdfs:comment "This requirement indicates that use is limited to within a specific geographic region." ; rdfs:subClassOf . nmrcv:NMR:1000438 a rdfs:Class ; rdfs:label "NMR database format"@de ; rdfs:subClassOf nmrcv:NMR:1001459 . nmrcv:NMR:1400110 a rdfs:Class ; rdfs:label "convolution" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400108 . nmrcv:NMR:1000496 a rdfs:Class ; rdfs:label "instrument attribute" ; rdfs:comment "Instrument properties that are associated with a value." ; rdfs:subClassOf nmrcv:NMR:1000547 . nmrcv:NMR:1000256 a rdfs:Class ; rdfs:label "traf window function"@en ; rdfs:comment "A Window function described by Daniel Traficante in their original paper." ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1001925 a rdfs:Class ; rdfs:label "submitter keyword" ; rdfs:comment "Keyword assigned by the data submitter." ; rdfs:subClassOf nmrcv:NMR:1000034 . a rdfs:Class ; rdfs:label "directive information entity"@en ; rdfs:comment "An information content entity whose concretizations indicate to their bearer how to realize them in a process."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "table"@en ; rdfs:comment "A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions"@en ; rdfs:subClassOf . nmrcv:NMR:1000261 a rdfs:Class ; rdfs:label "chemical shift sorting"@en ; rdfs:comment "A method of sorting multiple spectra by position of chemical shift peaks. This method is used in Batman and improves the fit for shifted/overlapped peaks." ; rdfs:subClassOf nmrcv:NMR:1400038 . a rdfs:Class ; rdfs:label "selected reaction monitoring" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "false discovery rate correction method"@en ; rdfs:comment "The false discovery rate is a data transformation used in multiple hypothesis testing to correct for multiple comparisons. It controls the expected proportion of incorrectly rejected null hypotheses (type I errors) in a list of rejected hypotheses. It is a less conservative comparison procedure with greater power than familywise error rate (FWER) control, at a cost of increasing the likelihood of obtaining type I errors. ." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "pathway"@en ; rdfs:comment "a metabolic pathway is a linked series of chemical reactions occurring within a cell. The reactants, products, and intermediates of an enzymatic reaction are known as metabolites, which are modified by a sequence of chemical reactions catalyzed by enzymes."@en ; rdfs:subClassOf . nmrcv:NMR:1400089 a rdfs:Class ; rdfs:label "atom environment encoding" ; rdfs:comment "def: A scheme for producing a numerical representation of the environment of an atom." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1400290 a rdfs:Class ; rdfs:label "Jeol Delta format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000405 a rdfs:Class ; rdfs:label "BMRB identifier"@en ; rdfs:subClassOf nmrcv:NMR:1000022 . a rdfs:Class ; rdfs:label "fluxomics investigation"@en ; rdfs:comment "fluxomics is a kind of investigation which aims at identifying, quantifying the fluxes of molecules in cellular systems and understanding the cellular metabolism."@en ; rdfs:subClassOf . nmrcv:NMR:1000421 a rdfs:Class ; rdfs:label "3D geometrical molecule representation"@en ; rdfs:subClassOf nmrcv:NMR:1000864 . a rdfs:Class ; rdfs:label "planned process" ; rdfs:comment "A processual entity that realizes a plan which is the concretization of a plan specification."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "detecting departure from linearity event"@en ; rdfs:comment "detecting departure from linearity event is a quality control process which aims to determine if measurements respond in a linear fashion of a linear increase of concentration of analytes. this is usually assessed by running a dilution series between analytical runs."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "scalar value specification" ; rdfs:comment "A value specification that consists of two parts: a numeral and a unit label" ; rdfs:subClassOf . nmrcv:NMR:1400265 a rdfs:Class ; rdfs:label "Wilmad" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1001107 a rdfs:Class ; rdfs:label "data stored in database" ; rdfs:comment "Source file for this nmrIdentML was a data set in a database." ; rdfs:subClassOf nmrcv:NMR:1001459 . nmrcv:NMR:1000152 a rdfs:Class ; rdfs:label "scaling by mirror image linear prediction"@en ; rdfs:subClassOf nmrcv:NMR:1000068 . nmrcv:NMR:1400283 a rdfs:Class ; rdfs:label "continuous wave NMR" ; rdfs:comment """Continuous wave NMR spectrometers are similar in principle to optical spectrometers. The sample is held in a strong magnetic field, and the frequency of the source is slowly scanned (in some instruments, the source frequency is held constant, and the field is scanned). Defprov: http://teaching.shu.ac.uk/hwb/chemistry/tutorials/molspec/nmr3.htm""" ; rdfs:subClassOf nmrcv:NMR:1000012 . a rdfs:Class ; rdfs:label "temporal region"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolism quenching"@en ; rdfs:comment "metabolism quenching is a planned processed whose objective is a quick extinction of all biochemical reactions occuring in a biological system in order to fix molecular entity concentrations for downstream quantitation and analysis. An array of physical or chemical agent may be used to achieve that goal."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "microliter" ; rdfs:comment "A volume unit which is equal to one millionth of a liter or 10^[-6] L." ; rdfs:subClassOf . nmrcv:NMR:1000185 a rdfs:Class ; rdfs:label "triplet feature"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . nmrcv:NMR:1000577 a rdfs:Class ; rdfs:label "NMR raw data file format" ; rdfs:comment "Describes the type of file and its content." ; rdfs:subClassOf nmrcv:NMR:1001459 . nmrcv:NMR:1000058 a rdfs:Class ; rdfs:label "31P spectrum reference compound"@en ; rdfs:subClassOf nmrcv:NMR:1400033 . nmrcv:NMR:1000353 a rdfs:Class ; rdfs:label "software attribute"@en ; rdfs:subClassOf . nmrcv:NMR:1000211 a rdfs:Class ; rdfs:label "NMR Format converter"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "direct assignment to standard" ; rdfs:comment "chemical entity assignment by direct assignment to standards is a data transformation process which uses spectral information from a known compound (ie. the standard) to match the signature and affirm identity based on the spectral features found in the sample." ; rdfs:subClassOf . nmrcv:NMR:1002032 a rdfs:Class ; rdfs:label "Hilbert transformation based scaling"@en ; rdfs:subClassOf nmrcv:NMR:1000079 . a rdfs:Class ; rdfs:label "continuant"@en ; rdfs:comment "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ; rdfs:subClassOf . nmrcv:NMR:1400041 a rdfs:Class ; rdfs:label "time domain data processing"@en ; rdfs:comment """def: The post acquisition process of producing or refining a spectrum from raw data. defprov: Daniel Schober""" ; rdfs:subClassOf nmrcv:NMR:1400042 . nmrcv:NMR:1000069 a rdfs:Class ; rdfs:label "multiplying FID by window function"@en ; rdfs:subClassOf nmrcv:NMR:1400041 . nmrcv:NMR:1000561 a rdfs:Class ; rdfs:label "data file checksum type" ; rdfs:comment "Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data." ; rdfs:subClassOf nmrcv:NMR:1000011 . a rdfs:Class ; rdfs:label "remove unwanted variation 2-step normalization"@en ; rdfs:comment "the 2 step normalization is a normalization process which uses 2 complementary steps provided suitable quality controls have been supplied. The process attempts to remove overall unwanted variation given suitable controls and uses factors of interest in the normalization. It relies on linear mixed effects model which utilizes quality control metabolites to obtain normalized data in typical metabolomics experiments."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "one dimensional cartesian spatial coordinate datum"@en ; rdfs:comment "A cartesion spatial coordinate datum that uses one value to specify a position along a one dimensional spatial region"@en ; rdfs:subClassOf . nmrcv:NMR:1000384 a rdfs:Class ; rdfs:label "JEOL Resonance 800MHz magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "population"@en ; rdfs:comment "a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area"@en ; rdfs:subClassOf . nmrcv:NMR:1000121 a rdfs:Class ; rdfs:label "heteronuclear chemical shift spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . a rdfs:Class ; rdfs:label "megaHertz" ; rdfs:comment "A frequency unit which is equal to one million hertz or 10^[6] V." ; rdfs:subClassOf . nmrcv:NMR:1400091 a rdfs:Class ; rdfs:label "x-axis unit" ; rdfs:comment """def: The units of measure for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum. altdef: The units used to represent either time domain (for a FID) or the frequency domain (for a spectrum).""" ; rdfs:subClassOf nmrcv:NMR:1000013 . nmrcv:NMR:1000250 a rdfs:Class ; rdfs:label "Bruker processing parameter file"@en ; rdfs:subClassOf nmrcv:NMR:1400123 . nmrcv:NMR:1000313 a rdfs:Class ; rdfs:label "acqu2s"@en ; rdfs:subClassOf nmrcv:NMR:1000230 . nmrcv:NMR:1000098 a rdfs:Class ; rdfs:label "DC offset correction"@en ; rdfs:subClassOf nmrcv:NMR:1000071 . nmrcv:NMR:1000226 a rdfs:Class ; rdfs:label "first transient of the tnnoesy-presaturation pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1000220 . a rdfs:Class ; rdfs:label "isotopologue"@en ; rdfs:comment "A single isotopologue represents a set of mass-equivalent isotopomers. It is therefore a set of chemicals representing molecules of the same chemical entity and same isotopic composition. Isotopologue can be monitored using mass spectrometry but only NMR spectroscopy can discriminate between positional isotopomer."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "reference compound"@en ; rdfs:comment "a reference compound is a chemical entity of know origin, formula and established spectral fingerprint added to a solution of unknown component in known quantities in order to provide a basis (hence the term reference) with which to establish a comparison, be used for calibration or quality control or quantitation estimate for unknown compound in spectral analysis such as NMR or mass spectrometry"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "chemostat"@en ; rdfs:comment """a chemostat is a device to which fresh medium is continuously added, while culture liquid is continuously removed to keep the culture volume constant. By changing the rate with which medium is added to the bioreactor the growth rate of the microorganism can be easily controlled. It allows culture to reach physiological steady state and chemostat is often used to gather steady state data about an organism in order to generate a mathematical model relating to its metabolic processes. The name chemostat stems from \"Chemical environment is static\". The most striking advantages of chemostats are two-fold: microorganisms can be kept at a constant environmental conditions until the cultivated microorganisms reach steady state, defined by their specific growth rate (μ) being in balance with the dilution rate (D). Once the system is equilibrated, the steady state data can be used for quantification of physiological parameters and metabolic rates of organisms, which are eventually required for the parameterization of mathematical models."""@en ; rdfs:subClassOf . nmrcv:NMR:1000174 a rdfs:Class ; rdfs:label "hard pulse width"@en ; rdfs:subClassOf nmrcv:NMR:1000173 . nmrcv:NMR:1400251 a rdfs:Class ; rdfs:label "CAT" ; rdfs:subClassOf nmrcv:NMR:1400250 . nmrcv:NMR:1400186 a rdfs:Class ; rdfs:label "Bruker NMR magnet" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400185 . nmrcv:NMR:1000410 a rdfs:Class ; rdfs:label "right trapezoid limit"@en ; rdfs:comment "0 a rdfs:Class ; rdfs:label "dye role"@en ; rdfs:comment "A molecular label role which inheres in a material entity and which is realized in the process of detecting a molecular dye that imparts color to some material of interest. " ; rdfs:subClassOf . nmrcv:NMR:1400074 a rdfs:Class ; rdfs:label "baseline correction" ; rdfs:comment "def: A method of flattening the baseline of a spectrum." ; rdfs:subClassOf nmrcv:NMR:1400038 . nmrcv:NMR:1400287 a rdfs:Class ; rdfs:label "GE Omega format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1400080 a rdfs:Class ; rdfs:label "first order phase correction" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000071 . nmrcv:NMR:1400203 a rdfs:Class ; rdfs:label "NMR Case" ; rdfs:comment """def: The NMR Case is an economical NMR sample changer for laboratories with modest automation needs. It expands the maximum number of samples your spectrometer can process during unattended operation to 24. The NMR Case consists of multiple components. The NMR Case exchange module installed atop your cryostat. The two front legs are adjustable, making the NMR Case compatible with many different cryostats. defprov: Bruker website""" ; rdfs:subClassOf nmrcv:NMR:1400209 . nmrcv:NMR:1000163 a rdfs:Class ; rdfs:label "NMR autosampler software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "metabolic flux unit"@en ; rdfs:comment "metabolic flux unit is a measurement unit datum used to qualify a metabolic flux. It is therefore an amount of matter over a temporal interval."@en ; rdfs:subClassOf . nmrcv:NMR:1000588 a rdfs:Class ; rdfs:label "contact URL" ; rdfs:comment "Uniform Resource Locator related to the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . nmrcv:NMR:1000267 a rdfs:Class ; rdfs:label "Match NMR tube"@en ; rdfs:subClassOf nmrcv:NMR:1000271 . a rdfs:Class ; rdfs:label "assessing within study variability"@en ; rdfs:comment "assessing within study variability is a quality control process which aims at monitoring the consistency of signal acquisition throughout the course of a study in order to detect unwanted causes of variation (i.e. variation that was not planned and that should be taken into account)."@en ; rdfs:subClassOf . nmrcv:NMR:1000200 a rdfs:Class ; rdfs:label "NMR spectrum by processing step"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . nmrcv:NMR:1000222 a rdfs:Class ; rdfs:label "dynamic nuclear polarization NMR"@en ; rdfs:subClassOf nmrcv:NMR:1000012 . nmrcv:NMR:1400027 a rdfs:Class ; rdfs:label "field strength" ; rdfs:comment "def: The intensity of an electric, magnetic, or other field." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1000117 a rdfs:Class ; rdfs:label "NMR spectrum by dimensionality"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . nmrcv:NMR:1000272 a rdfs:Class ; rdfs:label "JEOL magnet"@en ; rdfs:subClassOf nmrcv:NMR:1400185 . a rdfs:Class ; rdfs:label "algorithm"@en ; rdfs:comment "A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata."@en ; rdfs:subClassOf . nmrcv:NMR:1000867 a rdfs:Class ; rdfs:label "structural formula" ; rdfs:comment "A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other." ; rdfs:subClassOf nmrcv:NMR:1000864 . a rdfs:Class ; rdfs:label "mass spectrometry instrument"@en ; rdfs:subClassOf . nmrcv:NMR:1000395 a rdfs:Class ; rdfs:label "Varian VNMRS instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400234 . nmrcv:NMR:1400236 a rdfs:Class ; rdfs:label "Varian INOVA" ; rdfs:subClassOf nmrcv:NMR:1400234 . a rdfs:Class ; rdfs:label "Fluxomer Iterative Algorithm"@en ; rdfs:comment "FIA is a software written in python, implementing the FIA (Fluxomer Iterative Algorithm) - a new effective method for 13C metabolic fluxes (tracer) experiments analysis. It is developed by Orr Srour, Jamey D. Young and Yonina C. Eldar at the Technion, Israel Institute of Technology"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "analyte measurement objective"@en ; rdfs:comment "an assay objective to determine the presence or concentration of an analyte in the evaluant"@en ; rdfs:subClassOf . nmrcv:NMR:1000339 a rdfs:Class ; rdfs:label "complex128"@en ; rdfs:comment "This byte format uses a consecutive array of two 64bit double precision values to represent the real and imaginary part of the complex values." ; rdfs:subClassOf nmrcv:NMR:1000336 . nmrcv:NMR:1000181 a rdfs:Class ; rdfs:label "NMRProcFlow software"@en ; rdfs:comment "The NMRProcFlow open source software provides a complete set of tools for processing (e.g. Bucketing) and visualization of 1D NMR data, the whole within an interactive interface based on a spectra visualization."@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000106 a rdfs:Class ; rdfs:label "baseline correction using spline function"@en ; rdfs:subClassOf nmrcv:NMR:1400074 . nmrcv:NMR:1000110 a rdfs:Class ; rdfs:label "oneshot pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1400037 . nmrcv:NMR:1000379 a rdfs:Class ; rdfs:label "AVANCE IVDr"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "organism"@en ; rdfs:comment "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en ; rdfs:subClassOf . nmrcv:NMR:1400132 a rdfs:Class ; rdfs:label "NMR sample tube" ; rdfs:comment "The sample-tube holds the NMR sample and sits in the NMR probe. It is usually a glass tube of 5-20mm diameter." ; rdfs:subClassOf nmrcv:NMR:1400011 . a rdfs:Class ; rdfs:label "assay objective"@en ; rdfs:comment "an objective specification to determine a specified type of information about an evaluated entity (the material entity bearing evaluant role)"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolite excretion flux"@en ; rdfs:comment "an excretion flux is a metabolic flux indicating the rate of release of a metabolite by a cell system to its surroundings."@en ; rdfs:subClassOf . nmrcv:NMR:1400319 a rdfs:Class ; rdfs:label "Bruker DISNMR format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000054 a rdfs:Class ; rdfs:label "broad band decoupling"@en ; rdfs:subClassOf nmrcv:NMR:1000044 . nmrcv:NMR:1000205 a rdfs:Class ; rdfs:label "real value type"@en ; rdfs:subClassOf nmrcv:NMR:1000202 . a rdfs:Class ; rdfs:label "jump and return pulse sequence" ; rdfs:comment "A pulse cluster used for solvent suppression consisting of two rf pulses separated by a delay with conditions set such that the solvent signal alone is rendered unobservable by the second pulse. For the pulse sequence see J. Am. Chem. Soc., (1982), 104, pg 7310." ; rdfs:subClassOf . nmrcv:NMR:1000373 a rdfs:Class ; rdfs:label "Fourier 300HD"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "isotopic labeling with positional labeled tracer"@en ; rdfs:comment "Specific isotopic labeling refers to the placement of a single label (e.g., 2H, 13C, or 15N) in a specified location in a molecule."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nuclear magnetic resonance method" ; rdfs:comment "A technique or procedure applied in nuclear magnetic resonance experiments." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "peptide" ; rdfs:comment "Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "experimentally modified cell in vitro" ; rdfs:comment "A cell in vitro that has undergone physical changes as a consequence of a deliberate and specific experimental procedure." ; rdfs:subClassOf , . nmrcv:NMR:1000401 a rdfs:Class ; rdfs:label "Agilent 400-MR NMR instrument"@en ; rdfs:subClassOf nmrcv:NMR:1000400 . nmrcv:NMR:1000051 a rdfs:Class ; rdfs:label "solution" ; rdfs:comment "State if the sample is in solution form." ; rdfs:subClassOf nmrcv:NMR:1000049 . nmrcv:NMR:1000133 a rdfs:Class ; rdfs:label "PIPP software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1400192 a rdfs:Class ; rdfs:label "high resolution magic angle spin probe" ; rdfs:comment """def: Samples that are neither solid nor liquid, being of biological, chemical, and/or pharmaceutical interest, reveal highly resolved spectra when magic angle spinning is applied. The correct solution is a gradient, such that the field varies along the spinner axis. This so-called Magic Angle Gradient is employed in Bruker’s high resolution Magic Angle Spinning (hr-MAS) probes, and is implemented in such a way that it is compatible with the stator and does not interfere with the sample eject/insert. Bruker BioSpin has developed a series of dedicated probes for standard bore magnets to accommodate the rapidly expanding field of hr-MAS. These probes are available in double (e.g. 1H and 13C) and triple resonance (e.g., 1H, 13C, 15N) modes and come equipped with a deuterium lock channel. The probes have automatic sample ejection and insertion capability, with the availability of an optional sample changer, enabling fully automated sample runs. Probes can be equipped with an optional B0 gradient, directed along the magic angle, so that gradient spectroscopy can be done used. defprov: Bruker website altdef: High resolution MAS (hr-MAS) provides an easy means of obtaining high resolution spectra for a variety of samples that would otherwise result in poorly resolved spectra. The addition of an hr-MAS probe and a MAS pneumatic unit to a standard high resolution spectrometer is all that is needed to open the gate to the world of hr-MAS spectroscopy and gain access to a vast amount of highly interesting samples. synonyms: High resolution MAS, hr-MAS""" ; rdfs:subClassOf nmrcv:NMR:1400223 . nmrcv:NMR:1400056 a rdfs:Class ; rdfs:label "Frydman encoding" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400048 . nmrcv:NMR:1000878 a rdfs:Class ; rdfs:label "external reference identifier" ; rdfs:comment "An identifier/accession number to an external reference database." ; rdfs:subClassOf nmrcv:NMR:1400117 . a rdfs:Class ; rdfs:label "metabolism quenching using precooled 60 percent methanol HEPES buffer" ; rdfs:comment "a type of metabolism extinction which uses refrigerated buffer containing 60% of methanol HEPES solution"@en ; rdfs:subClassOf . nmrcv:NMR:1400247 a rdfs:Class ; rdfs:label "DISCOVERY console" ; rdfs:comment """def: The Discovery™ is a Windows XP Professional-based, integrated console designed especially for Solid-State NMR. The console includes everything needed to interface to any magnet and solids probe - from computer to cables to duplexing network defprov: tecmag website""" ; rdfs:subClassOf nmrcv:NMR:1400246 . a rdfs:Class ; rdfs:label "selection criterion"@en ; rdfs:comment "A directive information entity which defines and states a principle of standard by which selection process may take place."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "biochemical role" ; rdfs:comment "A biological role played by the molecular entity or part thereof within a biochemical context." ; rdfs:subClassOf . nmrcv:NMR:1400276 a rdfs:Class ; rdfs:label "liquid chromatography NMR" ; rdfs:subClassOf nmrcv:NMR:1400200 . nmrcv:NMR:1000192 a rdfs:Class ; rdfs:label "doublet of doublets feature"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . nmrcv:NMR:1000040 a rdfs:Class ; rdfs:label "nitromethane"@en ; rdfs:subClassOf nmrcv:NMR:1000036 . a rdfs:Class ; rdfs:label "protein" ; rdfs:comment "An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "solvent role"@en ; rdfs:comment "solvent role is a role played by a chemical entity present in a solution and providing the solvatation activity to other compounds, the solutes."@en ; rdfs:subClassOf . nmrcv:NMR:1000084 a rdfs:Class ; rdfs:label "pareto scaling"@en ; rdfs:subClassOf nmrcv:NMR:1000080 . a rdfs:Class ; rdfs:label "buffer"@en ; rdfs:comment "A buffer solution (more precisely, pH buffer or hydrogen ion buffer) is an aqueous solution consisting of a mixture of a weak acid and its conjugate base, or vice versa."@en ; rdfs:subClassOf . nmrcv:NMR:1000065 a rdfs:Class ; rdfs:label "synthetic reference signal"@en ; rdfs:subClassOf nmrcv:NMR:1002013 . nmrcv:NMR:1000094 a rdfs:Class ; rdfs:label "matNMR software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000244 a rdfs:Class ; rdfs:label "NMR software vendor"@en ; rdfs:subClassOf nmrcv:NMR:1001267 . nmrcv:NMR:1002008 a rdfs:Class ; rdfs:label "Conversion to nmrML" ; rdfs:comment "Conversion of a file format to Metabolomics Standards Initiative nmrData file format." ; rdfs:subClassOf nmrcv:NMR:1000452 . a rdfs:Class ; rdfs:label "user-specific restriction" ; rdfs:comment "This requirement indicates that use is limited to use by approved users." ; rdfs:subClassOf . nmrcv:NMR:1000436 a rdfs:Class ; rdfs:label "reference deconvolution"@de ; rdfs:comment "vertical alignment of on and offset of the peak of the reference compound." ; rdfs:subClassOf nmrcv:NMR:1000260 . a rdfs:Class ; rdfs:label "image"@en ; rdfs:comment "An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "midcor"@en ; rdfs:comment """“midcor.R” is an “R”-program that performs a primary analysis of isotopic isomers (isotopomers) distribution obtained by Gas Chromatography coupled with Mass Spectrometry (GCMS). The aim of this analysis is to have a correct distribution of isotopes originated from substrates that are artificially enriched with specific isotopes (usually 13C). To this end the program performs a correction for natural occurring isotopes and also correction for “impurities” of the assay media that give peaks overlapping with the spectra of analyzed labeled metabolites. This program offers two ways of corrections of “impurities” resulted from overlapping the assayed mass isotopomer distribution with peaks produced either by unknown metabolites in the media, or by different fragments produced by the assayed metabolite. The source code is available from https://github.com/seliv55/midcor""" ; rdfs:subClassOf . nmrcv:NMR:1000889 a rdfs:Class ; rdfs:label "modified peptide sequence" ; rdfs:comment "A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid mass modifications that are present using the notation where the total mass of the modified amino acid is specified in square bracketed numbers following the letter (e.g. R[162.10111] indicates an arginine whose final modified mass is 162.10111 amu)." ; rdfs:subClassOf nmrcv:NMR:1000887 . a rdfs:Class ; rdfs:label "imaging assay"@en ; rdfs:comment "An imaging assay is an assay to produce a picture of an entity. definition_source: OBI."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "monolayer cell culture"@en ; rdfs:comment "a cell culture population where no cells are grown on top of each other, producing a single layer of cells on the surface of the growth substrate, usually a flask or a petri dish"@en ; rdfs:subClassOf . nmrcv:NMR:1400218 a rdfs:Class ; rdfs:label "Paravision software" ; rdfs:subClassOf nmrcv:NMR:1400214 . a rdfs:Class ; rdfs:label "data visualization"@en ; rdfs:comment "An planned process that creates images, diagrams or animations from the input data."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "calibration"@en ; rdfs:comment """calibration is a process which relies on comparison between measurements in order to estimate the reliability of the measurements performed on a particular device or instrument configuration. a calibration process may be used to identify a systematic error in measurement and possibly include it into an error model. a calibration process may be used to detect degradation of parts of instruments when long data acquisition times are needed (e.g. degradation of a chromatography column in a GC-MS chain). """@en ; rdfs:subClassOf . nmrcv:NMR:1000047 a rdfs:Class ; rdfs:label "emulsion" ; rdfs:comment "State if the sample is in emulsion form." ; rdfs:subClassOf nmrcv:NMR:1000049 . a rdfs:Class ; rdfs:label "quality"@en ; rdfs:subClassOf . nmrcv:NMR:1000062 a rdfs:Class ; rdfs:label "triphenylphosphine"@en ; rdfs:subClassOf nmrcv:NMR:1000058 . a rdfs:Class ; rdfs:label "intervention design"@en ; rdfs:comment "An intervention design is a study design in which a controlled process applied to the subjects (the intervention) serves as the independent variable manipulated by the experimentalist. The treatment (perturbation or intervention) defined can be defined as a combination of values taken by independent variable manipulated by the experimentalists are applied to the recruited subjects assigned (possibly by applying specific methods) to treatment groups. The specificity of intervention design is the fact that independent variables are being manipulated and a response of the biological system is evaluated via response variables as monitored by possibly a series of assays."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "one-dimensional nuclear magnetic resonance spectroscopy" ; rdfs:comment "Spectroscopy where the energy states of spin-active nuclei placed in a static magnetic field are interrogated by inducing transitions between the states via radio frequency irradiation. Each experiment consists of a sequence of radio frequency pulses with delay periods in between them, and the spectrum is obtained by plotting chemical shift vs. frequency." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "1,4-dioxane" ; rdfs:comment "A dioxane with oxygen atoms at positions 1 and 4." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "time stamped measurement datum"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has time stamp"@en ; rdfs:comment "relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "has measurement datum"@en ; rdfs:comment "relates a time stamped measurement datum to the measurement datum that was measured"@en ; rdfs:domain ; rdfs:range ; rdfs:subPropertyOf . a rdfs:Class ; rdfs:label "sodium-23 atom" ; rdfs:comment "The stable isotope of sodium with relative atomic mass 22.989770, 100 atom percent natural abundance and nuclear spin 3/2." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "process boundary"@en ; rdfs:comment "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])"@en ; rdfs:subClassOf . nmrcv:NMR:1000233 a rdfs:Class ; rdfs:label "Varian autosampler"@en ; rdfs:subClassOf nmrcv:NMR:1400002 . nmrcv:NMR:1000170 a rdfs:Class ; rdfs:label "signal line width"@en ; rdfs:subClassOf nmrcv:NMR:1400116 . a rdfs:Class ; rdfs:label "morpholine" ; rdfs:subClassOf . nmrcv:NMR:1400201 a rdfs:Class ; rdfs:label "Capillary LC-NMR" ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "isotopologue distribution matrix"@en ; rdfs:comment """an isotopologue distribution matrix is an information object used in tracer based metabolomics experiments to report the amount of possible isotopologues (sets of isotopomers) derived from the tracer in a metabolic network. the matrix hold the mass isotopomer distributions (MIDs) of Elementary Metabolite Unit (EMU) which will be used as state variables. An EMU is defined as a distinct subset of a metabolite’s atoms. EMUs can exist in a variety of mass states depending on their isotopic compositions. An EMU in its lowest mass state is referred to as M+0, while an EMU that contains one additional atomic mass unit (e.g., due to the presence of a 13C atom in place of a 12C atom) is referred to as M+1, with higher mass states described accordingly. An MID is a vector that contains the fractional abundance of each mass state of an EMU."""@en ; rdfs:subClassOf . nmrcv:NMR:1000283 a rdfs:Class ; rdfs:label "4mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . nmrcv:NMR:1000747 a rdfs:Class ; rdfs:label "data processing completion time" ; rdfs:comment "The time that a data processing action was finished." ; rdfs:subClassOf . nmrcv:NMR:1400255 a rdfs:Class ; rdfs:label "NMR instrument manufacturer" ; rdfs:comment "A manufacturer that produces (and eventually sells) NMR instruments." ; rdfs:subClassOf nmrcv:NMR:1000496 . nmrcv:NMR:1000144 a rdfs:Class ; rdfs:label "TRIAD NMR software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "millimolar" ; rdfs:comment "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "length unit" ; rdfs:comment "A unit which is a standard measure of the distance between two points." ; rdfs:subClassOf . nmrcv:NMR:1000320 a rdfs:Class ; rdfs:label "title file"@en ; rdfs:subClassOf nmrcv:NMR:1000250 . a rdfs:Class ; rdfs:label "flask" ; rdfs:comment "a flask is a kind of container used for cell culture, and which is available in an array of material (usually transparent plastic polymer) which may be surface treated."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "13C--13C correlation spectroscopy" ; rdfs:comment "A type of homonuclear NMR spectroscopy where a second frequency dimension is employed to disperse the signals and reveal correlations between 13C nuclei that are J-coupled (usually \\leq 3 bonds apart)." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "drawing a conclusion" ; rdfs:comment "A planned process in which new information is inferred from existing information." ; rdfs:subClassOf . nmrcv:NMR:1400225 a rdfs:Class ; rdfs:label "micro imaging probe" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400231 . nmrcv:NMR:1400197 a rdfs:Class ; rdfs:label "AVANCE II spectrometer" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1002021 a rdfs:Class ; rdfs:label "assigned chemical compound concentration" ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1000073 a rdfs:Class ; rdfs:label "peak alignment"@en ; rdfs:subClassOf nmrcv:NMR:1000015 . nmrcv:NMR:1400106 a rdfs:Class ; rdfs:label "NMR data post-processing parameter set" ; rdfs:comment """def: A description of the post-processing strategy used to convert a pre-processed NMR spectrum into a suitable data format for chemometric analysis. synonym: NMR spectrum post-processing parameter set""" ; rdfs:subClassOf nmrcv:NMR:1000630 . nmrcv:NMR:1000209 a rdfs:Class ; rdfs:label "f1 axis"@en ; rdfs:subClassOf nmrcv:NMR:1000208 . a rdfs:Class ; rdfs:label "normalization by optimal selection with multiple internal standards"@en ; rdfs:comment "a normalization process which relies on the signal intensity measured for several reference compounds (internal standards) injected or added to the test samples in known quantities, thereby allowing sample comparison which have been placed on equal footing."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "molecular label role"@en ; rdfs:comment "a reagent role inhering in a molecular entity intended to associate with some molecular target to serve as a proxy for the presence, abundance, or location of this target in a detection of molecular label assay." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "fluorine-19 atom" ; rdfs:comment "The stable isotope of fluorine with relative atomic mass 18.998403 and nuclear spin (1)/2." ; rdfs:subClassOf . nmrcv:NMR:1000524 a rdfs:Class ; rdfs:label "data file content" ; rdfs:comment "Describes the data content on the file." ; rdfs:subClassOf nmrcv:NMR:1000011 . a rdfs:Class ; rdfs:label "double layer cell culture"@en ; rdfs:comment "a cell culture population where cells are grown on top of each other, producing two layers of cells on the surface of the growth substrate, usually a flask or a petri dish"@en ; rdfs:subClassOf . nmrcv:NMR:1400315 a rdfs:Class ; rdfs:label "ThermoFinnigan" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000301 a rdfs:Class ; rdfs:label "Vendor2nmrML_Java"@en ; rdfs:comment """Based on both nmrML.xsd (XML Schema Definition) and CV params (such as ontologies nmrCV, UO, CHEBI ...), a converter written in Java was developed that automatically generates nmrML files, from raw files of the major NMR vendors. The choice of Java was guided by i) the JAXB framework (Java Architecture for XML Binding), ii) its OS-platform independence and iii) strengthened by the existence of a useful java library (i.e [nmr-fid-tool](https://github.com/LuisFF/nmr-fid-tool)) for further processing and visualisation of the resulting nmrML data. As nmrML intents to gather and integrate several types of data and corresponding metadata in a single file, it is necessary to process each data source separately. Thus, two command tools were developed. The first one, nmrMLcreate allows to create a new nmrML file, based on available Bruker or Varian/Agilent raw files. The second one, nmrMLproc allows to add and fill in additional sections corresponding to the data processing step."""@en ; rdfs:subClassOf nmrcv:NMR:1000211 . nmrcv:NMR:1400258 a rdfs:Class ; rdfs:label "JEOL" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1400240 a rdfs:Class ; rdfs:label "AMX instrument" ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "micromolar" ; rdfs:comment "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "conclusion textual entity"@en ; rdfs:comment "A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers."@en ; rdfs:subClassOf , . nmrcv:NMR:1400214 a rdfs:Class ; rdfs:label "Bruker NMR software" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000091 . a rdfs:Class ; rdfs:label "methylation"@en ; rdfs:comment "a kind of derivatization which results in the addition of methyl group to molecules in an attempt to make ions derived from it more volatile in a gas-chromatography experiment."@en ; rdfs:subClassOf . nmrcv:NMR:1000017 a rdfs:Class ; rdfs:label "Chloroform-d"@en ; rdfs:subClassOf nmrcv:NMR:1000330 . a rdfs:Class ; rdfs:label "heteronuclear correlation spectroscopy" ; rdfs:comment "A type of NMR spectroscopy where a second frequency dimension is employed to disperse the signals and reveal correlations between protons and heteronuclei." ; rdfs:subClassOf . nmrcv:NMR:1000137 a rdfs:Class ; rdfs:label "computed concentration"@en ; rdfs:subClassOf nmrcv:NMR:1000095 . a rdfs:Class ; rdfs:label "Tetrapoda" ; rdfs:subClassOf . nmrcv:NMR:1000341 a rdfs:Class ; rdfs:label "binary data compression type"@en ; rdfs:subClassOf nmrcv:NMR:1000335 . a rdfs:Class ; rdfs:label "buffer role"@en ; rdfs:comment "buffer role is a role played by a chemical solution to dampens pH variation"@en ; rdfs:subClassOf . nmrcv:NMR:1400169 a rdfs:Class ; rdfs:label "1D pulse sequence" ; rdfs:comment """def: One dimensional (referring to a FID, pre-processed spectrum, or post-processed spectrum). synonym: 1D""" ; rdfs:subClassOf nmrcv:NMR:1400037 . a rdfs:Class ; rdfs:label "solvent blank"@en ; rdfs:comment "a material entity corresponding to ‘solvent’ (mobile phase in chromatography context) only, containing no biological sample and used as a negative control to evaluate carry over effect between injections of test samples."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "hexafluorobenzene" ; rdfs:comment "A member of the class of fluorobenzenes that is benzene in which all six hydrogen atom have been replaced by fluorine." ; rdfs:subClassOf . nmrcv:NMR:1002015 a rdfs:Class ; rdfs:label "bin label" ; rdfs:comment "Bin label." ; rdfs:subClassOf nmrcv:NMR:1002014 . a rdfs:Class ; rdfs:label "metran"@en ; rdfs:comment """Metran is a software for Metabolic Flux Analysis implementing the Elementary Metabolite Units. Metabolic Flux Analysis (MFA) has emerged as a tool of great significance for metabolic engineering and quantitative cell physiology. An important limitation of MFA, as carried out via stable isotope labeling and GC-MS measurements, is the large number of isotopomer/cumomer equations that need to be solved, especially when multiple isotopic tracers are used for the labeling of the system. This restriction reduces the ability of MFA to fully utilize the power of multiple isotopic tracers in elucidating the physiology of realistic situations comprising complex bioreaction networks. To address this limitation, we have developed a novel framework for modeling of isotopic tracer distributions that significantly reduces the number of variables, without any loss of information. The EMU framework is based on a highly efficient decomposition method that identifies the minimum amount of information needed to simulate isotopic labeling within a reaction network using the knowledge of atomic transitions occurring in the network reactions. The functional units generated by the decomposition algorithm, called elementary metabolite units (EMUs), form the new basis for generating system equations that describe the relationship between fluxes and isotopomer abundances. The EMU decomposition algorithm is completely unsupervised and converges within seconds even for very genome-wide network models. Isotopomer abundances simulated using the EMU framework are identical to those obtained using the isotopomer and cumomer frameworks, however, requiring significantly less computation time. For a typical carbon labeling system the total number of equations that needs to be solved is reduced by one order-of-magnitude (100s EMUs vs. 1000s cumomers). As such, the EMU framework is most efficient for the analysis of labeling by multiple isotopic tracers. For example, the analysis of gluconeogenesis network model with 2H, 13C, and 18O tracers requires only 354 EMUs compared to >2,000,000 isotopomers"""@en ; rdfs:subClassOf . nmrcv:NMR:1000859 a rdfs:Class ; rdfs:label "molecule" ; rdfs:comment "A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction." ; rdfs:subClassOf nmrcv:NMR:1000881 . a rdfs:Class ; rdfs:label "1H--13C heteronuclear correlation spectroscopy" ; rdfs:comment "A type of NMR spectroscopy where a second frequency dimension is employed to disperse the signals and reveal correlations between protons and 13C nuclei." ; rdfs:subClassOf . nmrcv:NMR:1000141 a rdfs:Class ; rdfs:label "Wattos software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000002 a rdfs:Class ; rdfs:label "long64"@en ; rdfs:subClassOf nmrcv:NMR:1000336 . a rdfs:Class ; rdfs:label "tandem mass spectrometry" ; rdfs:comment "Mass spectrometry involving multiple mass-selection steps, with some form of fragmentation occurring between each stage." ; rdfs:subClassOf . nmrcv:NMR:1000435 a rdfs:Class ; rdfs:label "plot and graph generation"@de ; rdfs:subClassOf nmrcv:NMR:1400038 . nmrcv:NMR:1400308 a rdfs:Class ; rdfs:label "Jasco" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000196 a rdfs:Class ; rdfs:label "doublet of triplets"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . a rdfs:Class ; rdfs:label "cell seeding density"@en ; rdfs:comment "Cell seeding density is a measurement datum which denotes the number of cells per surface area in the case of adherent cells or number of cells per volume in the case of free cells deposited in the culture vessel to start a cell culture. The cell seeding density is therefore stated in number of cells per cm2 or number of cells per ml."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "negative control role"@en ; rdfs:comment "positive control role is a role played by a material entity in the context of analytical work to provide no signal or a signal as close to baseline as technically possible (within the limits of detection) thereby providing a reference point for the noise and indicative that the detectors and signal acquisition system operate nominally."@en ; rdfs:subClassOf . nmrcv:NMR:1000278 a rdfs:Class ; rdfs:label "Wilmad tube"@en ; rdfs:subClassOf nmrcv:NMR:1400132 . a rdfs:Class ; rdfs:label "water suppression through gradient tailored excitation" ; rdfs:comment "A pulse cluster used for solvent (water) suppression. The solvent resonances are selectively excited and pulsed field gradients used to destroy the signal. For the pulse sequence see J. Biomol. NMR, (1992), 2, pg 661." ; rdfs:subClassOf . nmrcv:NMR:1400168 a rdfs:Class ; rdfs:label " total correlation spectroscopy pulse sequence" ; rdfs:comment """tempdef: Total Correlation Spectroscopy. A 2D homonuclear correlation experiment used to analyse scalar (J) coupling networks between protons. TOCSY is able to relay magnetisation between spins, A-B-C-D.., and can therefore show correlations amongst spins that are not directly coupled (eg A-C and A-D) but exist within the same spin system. defprov: Daniel Schober synonym:2D TOCSY pulse sequence""" ; rdfs:subClassOf nmrcv:NMR:1000220 . a rdfs:Class ; rdfs:label "total m/z signal intensity integrating over the whole peak with baseline substraction"@en ; rdfs:comment "Signal intensity of all m/z values after integrating the whole peak and subtracting baseline"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "long term reference"@en ; rdfs:comment """a pooled sample made from fractions from samples collected from large, study independent collection of samples with the purpose of serving as a reference for quality control purpose. Long Term Reference Samples maybe used in ring trials to check cross facility data acquisition consistency but also to enable data integration, irrespective of data acquisition platform or study context but providing a single point of reference against which to normalize. purpose: Inter study variability(within a core facility)"""@en ; rdfs:subClassOf . nmrcv:NMR:1002004 a rdfs:Class ; rdfs:label "NMR spectrometer file format" ; rdfs:comment "The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format." ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1400028 a rdfs:Class ; rdfs:label "spinning rate" ; rdfs:comment "def: The rate at which an item of analysis material is spun." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1400193 a rdfs:Class ; rdfs:label "solid magic angle spinning probe" ; rdfs:comment """def: Magic angle spinning, nowadays a routine technique for solids NMR, still offers the capability of innovation. The high mechanical performance of MAS probes in conjunction with efficient rf pulse techniques open new exciting fields in solids NMR of biological samples and in the field of quadrupolar nuclei. defprov: Bruker website synonym: solid MAS probe""" ; rdfs:subClassOf nmrcv:NMR:1400231 . nmrcv:NMR:1000426 a rdfs:Class ; rdfs:label "compound similarity measure"@en ; rdfs:subClassOf nmrcv:NMR:1000861 . nmrcv:NMR:1000107 a rdfs:Class ; rdfs:label "heteronuclear single quantum coherence spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1400162 . nmrcv:NMR:1000080 a rdfs:Class ; rdfs:label "non-linear scaling"@en ; rdfs:comment "used to be postfixed with algorithm" ; rdfs:subClassOf nmrcv:NMR:1000079 . a rdfs:Class ; rdfs:label "material combination objective" ; rdfs:comment "is an objective to obtain an output material that contains several input materials." ; rdfs:subClassOf . nmrcv:NMR:1000289 a rdfs:Class ; rdfs:label "2mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . a rdfs:Class ; rdfs:label "group randomization"@en ; rdfs:comment "A group assignment which relies on chance to assign materials to a group of materials in order to avoid bias in experimental set up."@en ; rdfs:subClassOf . nmrcv:NMR:1000176 a rdfs:Class ; rdfs:label "number of data points"@en ; rdfs:subClassOf nmrcv:NMR:1000013 . a rdfs:Class ; rdfs:label "ramid"@en ; rdfs:comment """RaMID is a computer program designed to read the machine-generated files saved in netCDF format containing registered time course of m/z chromatograms. It evaluates the peaks of mass isotopomer distribution (MID) making them ready for further correction for natural isotope occurrence. RaMID is written in “R”, uses library “ncdf4” (it should be installed before the first use of RaMID) and contains several functions, located in the files “ramid.R” and \"libcdf.R,\" designed to read CDF files, and analyze and visualize the spectra that they contain. the source code is available from: https://github.com/seliv55/RaMID""" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nucleic acid" ; rdfs:comment "A macromolecule made up of nucleotide units and hydrolysable into certain pyrimidine or purine bases (usually adenine, cytosine, guanine, thymine, uracil), D-ribose or 2-deoxy-D-ribose and phosphoric acid." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "aluminium-27 atom" ; rdfs:comment "The stable isotope of aluminium with relative atomic mass 26.98153 and nuclear spin (5)/2." ; rdfs:subClassOf . nmrcv:NMR:1000148 a rdfs:Class ; rdfs:label "time-domain amplitude computed concentration"@en ; rdfs:subClassOf nmrcv:NMR:1000137 . nmrcv:NMR:1400117 a rdfs:Class ; rdfs:label "reference" ; rdfs:comment "def: A reference is a label which refers to data elsewhere, as opposed to containing the data itself. Accessing the value that a reference refers to is called dereferencing it. References are fundamental in constructing many data structures and in exchanging information between different parts of programs and databases." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "centrally registered identifier"@en ; rdfs:comment "An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "metabolic flux analysis"@en ; rdfs:comment "metabolic flux analysis is a type of investigation which uses data from tracer based studies to provide insights into cellular metabolites creation and destruction."@en ; rdfs:subClassOf . nmrcv:NMR:1400002 a rdfs:Class ; rdfs:label "autosampler" ; rdfs:comment """def: An optional part of an NMR instrument used to hold samples prior to NMR analysis and that sequentially loads these samples into the analytical part of the NMR instrument. altdef: The autosampler is an automatic sample changer.""" ; rdfs:subClassOf nmrcv:NMR:1400001 . a rdfs:Class ; rdfs:label "no general methods research" ; rdfs:comment "This secondary category consent code indicates that use includes methods development research(e.g., development of software or algorithms) only within the bounds of other use limitations." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "peak area" ; rdfs:comment "The area of a peak is a kind of data derived from a spectrum which is proportional to the product of its height and its width of a spectrum peak, but the proportionality constant depends on the peak shape." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Eukaryota" ; rdfs:subClassOf . nmrcv:NMR:1000103 a rdfs:Class ; rdfs:label "SEM window function"@en ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1000892 a rdfs:Class ; rdfs:label "unlabeled peptide" ; rdfs:comment "A peptide that has not been labeled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\"." ; rdfs:subClassOf nmrcv:NMR:1000887 . nmrcv:NMR:1000237 a rdfs:Class ; rdfs:label "Varian liquid cold probe"@en ; rdfs:subClassOf nmrcv:NMR:1000235 . nmrcv:NMR:1400211 a rdfs:Class ; rdfs:label "Bruker MATCH" ; rdfs:comment """def: The Bruker Multiple Adjustable Tube Clamp Holder MATCH™ system is a holder for 100 mm long NMR sample tubes with diameters ranging from micro tubes up to 5 mm NMR tubes. The MATCH insert fits into a standard 10 mm Bruker spinner and is suitable for all non-spinning applications. The MATCH system provides an easy and cost efficient means of optimizing the signal-to-noise ratio of each sample. By matching the NMR tube diameter to the size of the sample, most of the sample can be placed in the active column of the NMR coil. This leads to an enhanced signal detection compared to diluting the same sample quantity in a larger tube. defprov: Bruker website synonym: Bruker Multiple Adjustable Tube Clamp Holder""" ; rdfs:subClassOf nmrcv:NMR:1400212 . nmrcv:NMR:1000293 a rdfs:Class ; rdfs:label "1mm standard tube"@en ; rdfs:subClassOf nmrcv:NMR:1000270 . a rdfs:Class ; rdfs:label "collection at cell cycle phase"@en ; rdfs:comment "a process of collecting a sample when the cells of cell culture growth are collected at a specific phase of the cell division cycle (e.g collection at G2/G1). This often requires a cell synchronization step."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Topic" ; rdfs:comment "A category denoting a rather broad domain or field of interest, study, application, work, data, or technology. Topics have no clearly defined borders between each other." ; rdfs:subClassOf . nmrcv:NMR:1400138 a rdfs:Class ; rdfs:label "bucketing" ; rdfs:comment "Taking advantage of the concentration variability of each compound in a series of samples, buckets are linked together into clusters based on significant correlations.This is done i.g. in ERVA-based bucketing" ; rdfs:subClassOf nmrcv:NMR:1000015 . a rdfs:Class ; rdfs:label "group assignment"@en ; rdfs:comment "group assignment is a process which has an organism as specified input and during which a role is assigned"@en ; rdfs:subClassOf . nmrcv:NMR:1400034 a rdfs:Class ; rdfs:label "quality check compound signal" ; rdfs:comment "def: The compound that produced a peak that is measured to assess the quality of a data set." ; rdfs:subClassOf nmrcv:NMR:1400107 . a rdfs:Class ; rdfs:label "macromolecule" ; rdfs:comment "A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "ethics approval required" ; rdfs:comment "This requirement indicates that the requestor must provide documentation of local IRB/ERB approval." ; rdfs:subClassOf . nmrcv:NMR:1000248 a rdfs:Class ; rdfs:label "cule NMR software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "investigation"@en ; rdfs:comment "a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s)."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "elution program"@en ; rdfs:comment "an elution program is a set of recorded instructions which determine the mobile phase (gas or liquid) composition, pressure, temperature and flow rate during the chromatography separation."@en ; rdfs:subClassOf . nmrcv:NMR:1000330 a rdfs:Class ; rdfs:label "NMR solvent"@en ; rdfs:comment "Use Chebi entities here." ; rdfs:subClassOf . nmrcv:NMR:1000130 a rdfs:Class ; rdfs:label "calibration test spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1000200 . a rdfs:Class ; rdfs:label "specifically dependent continuant"@en ; rdfs:comment "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en ; rdfs:subClassOf . nmrcv:NMR:1000159 a rdfs:Class ; rdfs:label "Trimethylsilyl propionate"@en ; rdfs:subClassOf nmrcv:NMR:1000026 . nmrcv:NMR:1000036 a rdfs:Class ; rdfs:label "15N spectrum reference compound"@en ; rdfs:subClassOf nmrcv:NMR:1400033 . nmrcv:NMR:1400146 a rdfs:Class ; rdfs:label "coherence pathway rejection" ; rdfs:comment """tempdef: A water suppression method which is used to suppress the natural water signal in a gradient selection experiment (e.g. echo/antiecho), where the water coherence is not \"refocused\" by the refocus gradient (therefore, is not selected). defprov: Daniel Schober""" ; rdfs:subClassOf nmrcv:NMR:1400066 . a rdfs:Class ; rdfs:label "decoupling pulse sequence" ; rdfs:comment "An NMR pulse sequence that decouples nuclei i.e. removes the effects of (usually) J-coupling (line splitting) from the spectrum." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "protein content"@en ; rdfs:comment "the amount of (soluble) protein from cell culture or tissue. the quantity of total protein recovered from an extraction process varies depending on the solvent and buffers used during the extraction phase. the amount is usuall expressed in milligram (refer to Unit Ontology)"@en ; rdfs:subClassOf . nmrcv:NMR:1000457 a rdfs:Class ; rdfs:label "sample" ; rdfs:comment """tempdef: A sample is a role that is played by an object of interest in an investigation used to obtain generalizable information about the sample source. defprov: Daniel Schober""" ; rdfs:subClassOf . nmrcv:NMR:1400229 a rdfs:Class ; rdfs:label "JEOL NMR software" ; rdfs:subClassOf nmrcv:NMR:1000091 . nmrcv:NMR:1002010 a rdfs:Class ; rdfs:label "NMR solvent information" ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1400298 a rdfs:Class ; rdfs:label "Galactic format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "collection at stationary phase"@en ; rdfs:comment "a process of collecting a sample when the cell culture growth has reached a plateau, indicative of a steady state"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "centrifugation" ; rdfs:comment "centrifugation is a material component separation process which relies on centrifugational forces applied by means of high velocity rotation to a sample placed in a vial or tube in a rotor, fixed to an centrifugation instrument."@en ; rdfs:subClassOf . nmrcv:NMR:1400170 a rdfs:Class ; rdfs:label "J-resolved pulse sequence" ; rdfs:comment """tempdef: In 1D NMR, as the multiplets from different chemically shifted nuclei overlap, spectral assignments become too difficult. In order to resolve the chemical shift and spin-spin coupling parameters along the different axis, 2D and 3D J-resolved NMR spectroscopies are used. defprov: Daniel Schober synonym: 2D J-resolved""" ; rdfs:subClassOf nmrcv:NMR:1000220 . a rdfs:Class ; rdfs:label "interacellular metabolite average content"@en ; rdfs:comment "intracellular metabolite average content is a measurement provided of metabolite concentration normalized against cell average volume or DNA content or protein content or dry weight"@en ; rdfs:subClassOf . nmrcv:NMR:1400207 a rdfs:Class ; rdfs:label "SampleRail" ; rdfs:comment """def: This system automatically prepares an NMR sample, inserts it into an NMR magnet, performs NMR experiments on the sample, and transports it back to the preparation system. The SampleRail fulfills the transporting tasks from the preparation system into the NMR magnet and back defprov: website""" ; rdfs:subClassOf nmrcv:NMR:1400002 . nmrcv:NMR:1000120 a rdfs:Class ; rdfs:label "homonuclear chemical shift spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1002007 . nmrcv:NMR:1400095 a rdfs:Class ; rdfs:label "x end value" ; rdfs:comment "tempdef: The end value for the x-axis of a (1D or 2D) FID, (1D or 2D) pre-processed spectrum, 2D projected spectrum, and (1D or 2D) post-processed spectrum." ; rdfs:subClassOf nmrcv:NMR:1400114 . a rdfs:Class ; rdfs:label "metabolite pool size estimate"@en ; rdfs:comment "metabolite pool size estimate is an information entity used in fluxomics studies to estimate the amount of molecular entity available to a particular metabolic process. It is usually reported in umol per mg of protein."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "cultured cell population" ; rdfs:comment "A processed material comprised of a collection of cultured cells that has been continuously maintained together in culture and shares a common propagation history." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "AbsoluteIDQ Stero17 Kit"@en ; rdfs:comment "AbsoluteIDQ Stero17 kit is a reagent system manufactured by Biocrates AG, Austria which allows the targeted metabolite profiling (identification and quantification) of 17 steroid hormones (sex steroids, mineralocorticoids, glucocorticoids)."@en ; rdfs:subClassOf . nmrcv:NMR:1000025 a rdfs:Class ; rdfs:label "1,4-Dioxane"@en ; rdfs:subClassOf nmrcv:NMR:1000026 , nmrcv:NMR:1000030 . nmrcv:NMR:1400070 a rdfs:Class ; rdfs:label "Gaussian window function" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1400312 a rdfs:Class ; rdfs:label "ThermoNicolet" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "organization"@en ; rdfs:comment "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members."@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "has organization member"@en ; rdfs:comment "Relating an organization to a legal person or organization." ; rdfs:domain ; rdfs:range xsd:string . nmrcv:NMR:1000014 a rdfs:Class ; rdfs:label "pre-acquisition solvent suppression"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "tetraphosphorus" ; rdfs:subClassOf . nmrcv:NMR:1400045 a rdfs:Class ; rdfs:label "non-fourier FID transformation" ; rdfs:comment "tempdef: A non FT based method for converting from the time to the frequency domain." ; rdfs:subClassOf nmrcv:NMR:1400041 . nmrcv:NMR:1000160 a rdfs:Class ; rdfs:label "TMIC lab pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1400037 . nmrcv:NMR:1000114 a rdfs:Class ; rdfs:label "NMR Star 2.1 file format"@en ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "biomass"@en ; rdfs:comment "biomass is a rate measurement datum of how much biochemical or biological material is produced over a period of time. it is usually reported in 'per hour'."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "categorical label" ; rdfs:comment "A label that is part of a categorical datum and that indicates the value of the data item on the categorical scale." ; rdfs:subClassOf . nmrcv:NMR:1400013 a rdfs:Class ; rdfs:label "acquisition computer" ; rdfs:comment "def: A Computer used for NMR, can be divided into central processing unit (CPU), consisting of instruction, interpretation and arithmetic unit plus fast access memory, and peripheral devices such as bulk data storage and input and output devices (including, via the interface, the spectrometer). Under software control, the computer controls the RF pulses and gradients necessary to acquire data, and process the data to produce spectra or images. Note that devices such as the spectrometer may themselves incorporate small computers." ; rdfs:subClassOf nmrcv:NMR:1400011 . nmrcv:NMR:1400128 a rdfs:Class ; rdfs:label "NMR sample" ; rdfs:comment """def: A sample that has been prepared for chemical analysis by NMR. NMR samples are usually liquid solutions contained in glass tubes. NMR solution sample volume ranges from 50ul to 5ml depending on the NMR probe. Sample concentrations of solute for 1H NMR are usually in the range of 100ug to 5g, with 10 to 50mg being typical. NMR is not a chemical trace analysis technique. The NMR signal of solids and gases can be recorded but to measure solid-state NMR additional specialized hardware is required. synonym: NMR sample""" ; rdfs:subClassOf nmrcv:NMR:1000457 . nmrcv:NMR:1000345 a rdfs:Class ; rdfs:label "digital signal processing firmware version"@en ; rdfs:comment "DSPFVS - DSP (Digital signal processing) firmware version corresponds to the version of the digital filter, a hardware component used by the spectrometer" ; rdfs:subClassOf nmrcv:NMR:1000496 . nmrcv:NMR:1000334 a rdfs:Class ; rdfs:label "data content encoding"@en ; rdfs:subClassOf nmrcv:NMR:1000343 . a rdfs:Class ; rdfs:label "Benjamini and Hochberg false discovery rate correction method"@en ; rdfs:comment "A data transformation process in which the Benjamini and Hochberg method sequential p-value procedure is applied with the aim of correcting false discovery rate" ; rdfs:subClassOf . nmrcv:NMR:1400304 a rdfs:Class ; rdfs:label "Nicolet GE/QE-300 format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000548 a rdfs:Class ; rdfs:label "sample attribute" ; rdfs:comment "Sample properties that are associated with a value." ; rdfs:subClassOf nmrcv:NMR:1000547 . nmrcv:NMR:1000415 a rdfs:Class ; rdfs:label "ROSDAL"@en ; rdfs:subClassOf nmrcv:NMR:1000418 . nmrcv:NMR:1000299 a rdfs:Class ; rdfs:label "nmRIO"@en ; rdfs:comment "R statistics to nmrML. Developed by Steffen Neumann, IPB-Halle.de"@en ; rdfs:subClassOf nmrcv:NMR:1000211 . a rdfs:Class ; rdfs:label "fiatFlux"@en ; rdfs:comment "An intuitive tool for quantitative investigations of intracellular metabolism by users that are not familiar with numerical methods or isotopic tracer experiments. The aim of this open source software is to enable non-specialists to adapt the software to their specific scientific interests, including other 13C-substrates, labeling mixtures, and organisms. FiatFlux is written in Matlab"@en ; rdfs:subClassOf . nmrcv:NMR:1400015 a rdfs:Class ; rdfs:label "console" ; rdfs:comment "def: A component of an NMR instrument that controls the activities of the other components." ; rdfs:subClassOf nmrcv:NMR:1400011 . nmrcv:NMR:1001040 a rdfs:Class ; rdfs:label "intermediate analysis format" ; rdfs:comment "Type of the source file, the nmrIdentML was created from." ; rdfs:subClassOf nmrcv:NMR:1001459 . nmrcv:NMR:1400147 a rdfs:Class ; rdfs:label "flip-back watergate" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400143 . a rdfs:Class ; rdfs:label "pathway identifier"@en ; rdfs:comment "a centrally registered identifier which denotes a pathway data item"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "lipid extraction"@en ; rdfs:comment "lipid extraction is an extraction which aims to retrieve lipid (hydrophobic carbohydrate) from a specimen"@en ; rdfs:subClassOf . nmrcv:NMR:1000900 a rdfs:Class ; rdfs:label "minimum information standard" ; rdfs:comment "A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result." ; rdfs:subClassOf nmrcv:NMR:1000898 . a rdfs:Class ; rdfs:label "material maintenance objective" ; rdfs:comment "An objective specification maintains some or all of the qualities of a material over time." ; rdfs:subClassOf . nmrcv:NMR:1400142 a rdfs:Class ; rdfs:label "nuclear overhauser and exchange spectroscopy-presat" ; rdfs:comment """tempdef: The presat for an nuclear overhauser and exchange spectroscopy experiment. A 2D method used to map NOE correlations between protons within a molecule. The nuclear Overhauser effect (NOE) causes changes in peak areas, as a secondary effect of decoupling. defprov: Daniel Schober synonym: NOESY-presat""" ; rdfs:subClassOf nmrcv:NMR:1400140 . nmrcv:NMR:1000323 a rdfs:Class ; rdfs:label "JspectraView software"@en ; rdfs:comment "Used in NMR Assign tool for Baysil"@en ; rdfs:subClassOf nmrcv:NMR:1000322 . a rdfs:Class ; rdfs:label "water" ; rdfs:comment "An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms." ; rdfs:subClassOf . nmrcv:NMR:1000356 a rdfs:Class ; rdfs:label "AA'BB' multiplet pattern"@en ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1400301 a rdfs:Class ; rdfs:label "Lybrics format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "unit" ; rdfs:comment "A unit of measurement is a standardized quantity of a physical quality." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "solvent"@en ; rdfs:comment "a solvent is a chemical entity playing a solvent role in a solution."@en ; rdfs:subClassOf . nmrcv:NMR:1400081 a rdfs:Class ; rdfs:label "symmetrisation" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400038 . a rdfs:Class ; rdfs:label "measurement datum"@en ; rdfs:comment "A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device."@en ; rdfs:subClassOf . nmrcv:NMR:1000166 a rdfs:Class ; rdfs:label "field frequency lock"@en ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1000099 a rdfs:Class ; rdfs:label "Gibbs multiplication"@en ; rdfs:subClassOf nmrcv:NMR:1400038 . a rdfs:Class ; rdfs:label "iso2flux"@en ; rdfs:comment """Iso2Flux is a Python-based flux analysis software that allows to perform 13C Metabolic Flux Analysis on a sub-network of a large scale model. Iso2flux uses constraint-based modelling to compute steady state fluxes across a large metabolic network and uses such flxues to predict 13C distribution across a subser of the newtork. Then, given a set of 13C data Iso2flux can iteratively find the steady state flux distributions that are most consistent with such fluxes. the source code is available from: https://github.com/cfoguet/iso2flux"""@en ; rdfs:subClassOf . nmrcv:NMR:1400023 a rdfs:Class ; rdfs:label "dwell time" ; rdfs:comment """def: A digital sampling interval. alsprcls: time interval""" ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1000437 a rdfs:Class ; rdfs:label "spectral smoothing"@de ; rdfs:comment "the process of removing noisy jitters in a spectral curve to get clearer and more meaningful signals and peaks." ; rdfs:subClassOf nmrcv:NMR:1400073 . nmrcv:NMR:1000039 a rdfs:Class ; rdfs:label "1,4-morpholine"@en ; rdfs:subClassOf nmrcv:NMR:1000036 . nmrcv:NMR:1000391 a rdfs:Class ; rdfs:label "Kimble Chase"@en ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000198 a rdfs:Class ; rdfs:label "triplet of triplets"@en ; rdfs:subClassOf nmrcv:NMR:1400006 . a rdfs:Class ; rdfs:label "no restriction" ; rdfs:comment "This consent code primary category indicates there is no restriction on use." ; rdfs:subClassOf . nmrcv:NMR:1000155 a rdfs:Class ; rdfs:label "Batman software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . a rdfs:Class ; rdfs:label "steady state isotopic labeling experiment"@en ; rdfs:comment "steady state labeling experiment is a material processing used in fluxomics studies where cells cultures are grown continuously in the presence of radiolabeled tracer compound throughout multiple platings. The redistribution of the label into metabolic intermediates and end-products is analysed when the system has reached an isotopic and metabolic steady state."@en ; rdfs:subClassOf . nmrcv:NMR:1000424 a rdfs:Class ; rdfs:label "fingerprint model"@en ; rdfs:subClassOf nmrcv:NMR:1000861 . a rdfs:Class ; rdfs:label "milligram per milliliter" ; rdfs:comment "A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "planning"@en ; rdfs:comment "a process of creating or modifying a plan specification"@en ; rdfs:subClassOf . nmrcv:NMR:1000363 a rdfs:Class ; rdfs:label "global baseline correction"@en ; rdfs:comment "as needed for nmrProcFlow" ; rdfs:subClassOf nmrcv:NMR:1400074 . a rdfs:Class ; rdfs:label "chromatography column"@en ; rdfs:comment "A Chromatography column is a device used in chromatography for the separation of chemical compounds. A chromatography column contains the stationary phase, allowing the mobile phase to pass through it. Chromatography columns of different types are used in both gas and liquid chromatography."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "low dose"@en ; rdfs:comment "low dose is a dose specifically set to trigger no or very limited response in the system it is administered to, those effects are not expected to be toxic. Also, the denomination allows a discrete, categorical classification of the dose points, irrespective of the actual quantity administered thereby allowing to capture the intent of the operator, something which is not necessary explicit when reading the quantitative dose reading (specific to a chemical entity and a system)."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "publication required" ; rdfs:comment "This requirement indicates that requestor agrees to make results of studies using the data available to the larger scientific community." ; rdfs:subClassOf . nmrcv:NMR:1000028 a rdfs:Class ; rdfs:label "sodium acetate"@en ; rdfs:subClassOf nmrcv:NMR:1000026 . a rdfs:Class ; rdfs:label "openFlux2" ; rdfs:comment "OpenFLUX2 is a MATLAB-based modelling software for 13C metabolic flux analysis (MFA). Modern techniques like Elementary Metabolite Unit (EMU) framework, are implemented for efficient computing of fluxes. OpenFlux2 is an expanded version of OpenFLUX to support analysis of parallel labeling experiments (PLE) data, i.e. those experiments using several different tracers concomitantly." ; rdfs:subClassOf . nmrcv:NMR:1000413 a rdfs:Class ; rdfs:label "inchikey"@en ; rdfs:subClassOf nmrcv:NMR:1000418 . a rdfs:Class ; rdfs:label "graph"@en ; rdfs:comment "A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way."@en ; rdfs:subClassOf . nmrcv:NMR:1002020 a rdfs:Class ; rdfs:label "assigned chemical compound name" ; rdfs:comment "Name of metabolite." ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1000079 a rdfs:Class ; rdfs:label "scaling"@en ; rdfs:comment "used to be called 'scaling algorithm'" ; rdfs:subClassOf nmrcv:NMR:1400038 . a rdfs:Class ; rdfs:label "data about an ontology part"@en ; rdfs:comment "data about an ontology part is a data item about a part of an ontology, for example a term"@en ; rdfs:subClassOf . nmrcv:NMR:1000164 a rdfs:Class ; rdfs:label "Bruker Biospin ICON-NMR software"@en ; rdfs:seeAlso ; rdfs:subClassOf nmrcv:NMR:1000163 . nmrcv:NMR:1000161 a rdfs:Class ; rdfs:label "probe gradient strength"@en ; rdfs:subClassOf nmrcv:NMR:1400027 . a rdfs:Class ; rdfs:label "year" ; rdfs:comment "A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nitromethane" ; rdfs:comment "A primary nitroalkane that is methane in which one of the hydrogens is replace by a nitro group. A polar solvent (b.p. 101 degreeC), it is an important starting material in organic synthesis. It is also used as a fuel for rockets and radio-controlled models." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "disease" ; rdfs:comment "A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. [url:http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf ]" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "error correction objective"@en ; rdfs:comment "An error correction objective is a data transformation objective where the aim is to remove (correct for) erroneous contributions arising from the input data, or the transformation itself."@en ; rdfs:subClassOf . nmrcv:NMR:1000868 a rdfs:Class ; rdfs:label "SMILES string" ; rdfs:comment "The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string." ; rdfs:subClassOf nmrcv:NMR:1000418 . nmrcv:NMR:1400307 a rdfs:Class ; rdfs:label "FOSS" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1000349 a rdfs:Class ; rdfs:label "uniform sampling"@en ; rdfs:comment "With uniform sampling, each sample is separated by the \"dwell time\"." ; rdfs:subClassOf nmrcv:NMR:1000348 . nmrcv:NMR:1000097 a rdfs:Class ; rdfs:label "automatic phase correction"@en ; rdfs:subClassOf nmrcv:NMR:1000071 . nmrcv:NMR:1400073 a rdfs:Class ; rdfs:label "spectral denoising" ; rdfs:comment "def: A method for eliminating or reducing the noise in a spectrum." ; rdfs:subClassOf nmrcv:NMR:1400038 . a rdfs:Class ; rdfs:label "kilogram" ; rdfs:comment "A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France." ; rdfs:subClassOf . nmrcv:NMR:1000325 a rdfs:Class ; rdfs:label "inverse detection NMR probe"@en ; rdfs:subClassOf nmrcv:NMR:1400014 . nmrcv:NMR:1400217 a rdfs:Class ; rdfs:label "SampleTrack software" ; rdfs:subClassOf nmrcv:NMR:1400214 . nmrcv:NMR:1000314 a rdfs:Class ; rdfs:label "acqu3s"@en ; rdfs:subClassOf nmrcv:NMR:1000230 . nmrcv:NMR:1000251 a rdfs:Class ; rdfs:label "procs"@en ; rdfs:subClassOf nmrcv:NMR:1000250 . a rdfs:Class ; rdfs:label "polar metabolite extraction"@en ; rdfs:comment "polar metabolite extraction is a metabolite extraction which aims to retrieve water soluble or metabolites with polar solvent solubility properties. This is usually exclusive of hydrophobique, lipophile and lipid like metabolites."@en ; rdfs:subClassOf . nmrcv:NMR:1000389 a rdfs:Class ; rdfs:label "Spinlock SRL"@en ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "coated microplate" ; rdfs:comment """a coated microplate is a kind of microplate whom surface has been treated in some, for instance by covalently attaching protein such as antibodies and cell matrix molecules to favor cell growth or induce speficic cellular behavior. """@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "observation design"@en ; rdfs:comment "observation design is a study design in which subjects are monitored in the absence of any active intervention by experimentalists."@en ; rdfs:subClassOf . nmrcv:NMR:1000290 a rdfs:Class ; rdfs:label "4.25mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . nmrcv:NMR:1400111 a rdfs:Class ; rdfs:label "polynomial fitting" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400108 . nmrcv:NMR:1000890 a rdfs:Class ; rdfs:label "peptide labeling state" ; rdfs:comment "A state description of how a peptide might be isotopically or isobarically labelled." ; rdfs:subClassOf nmrcv:NMR:1000887 . nmrcv:NMR:1000266 a rdfs:Class ; rdfs:label "cluster of peaks"@en ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1400291 a rdfs:Class ; rdfs:label "JEOL generic format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "genetic alteration information"@en ; rdfs:comment "a genetic characteristics information that is about known changes or the lack thereof from the genetic background, including allele information, duplication, insertion, deletion, etc."@en ; rdfs:subClassOf . nmrcv:NMR:1000201 a rdfs:Class ; rdfs:label "2D spectrum coordinate system descriptor"@en ; rdfs:subClassOf nmrcv:NMR:1000172 . nmrcv:NMR:1400185 a rdfs:Class ; rdfs:label "NMR magnet" ; rdfs:comment """def: A magnet which induces a certain frequency (MHz) and which has a certain bore diameter. altdef: The NMR signal is a natural physical property of the certain atomic nuclei but it can only be detected with an external magnetic field. A magnet is a fundamental part of an NMR instrument which induces an electromagnetic force field (RF pulse) and by this excites and aligns the spins of the electrons of the NMR acquisition nucleus. It is usually a big (superconducting) electromagnet which is cooled by liquid helium and can be adjusted to a frequency between 200 and 950 MHz. The magnetic field strength is measured in Tesla or Gauss.""" ; rdfs:subClassOf nmrcv:NMR:1400011 . a rdfs:Class ; rdfs:label "metabolite uptake flux"@en ; rdfs:comment "an uptake flux is a metabolic flux indicating the rate of absorption of a molecular entity by a cell system from its surroundings"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "percent" ; rdfs:comment "A dimensionless ratio unit which denotes numbers as fractions of 100." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "1H nuclear magnetic resonance spectroscopy" ; rdfs:comment "Spectroscopy where the energy states of 1H nuclei placed in a static magnetic field are interrogated by inducing transitions between the states via radio frequency irradiation. Each experiment consists of a sequence of radio frequency pulses with delay periods in between them." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "phenotype" ; rdfs:comment "A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species."@en ; rdfs:subClassOf . nmrcv:NMR:1000262 a rdfs:Class ; rdfs:label "fid file"@en ; rdfs:subClassOf nmrcv:NMR:1000264 . nmrcv:NMR:1400105 a rdfs:Class ; rdfs:label "NMR spectral projection parameter set" ; rdfs:comment """def: The data processing parameters that describe a method of translating a 2D NMR pre-processed spectrum into a 1D NMR spectrum. synonym: NMR spectral projection parameter set""" ; rdfs:subClassOf nmrcv:NMR:1400106 . a rdfs:Class ; rdfs:label "steady state 13C metabolic flux analysis"@en ; rdfs:comment """steady-state 13C metabolic flux analysis is a metabolic flux analysis approach which relies on 13C tracer experiments and requires long incubation period necessary to meet methodological requirements that all reactions under study have reach steady state. By feeding cells a 13C-labeled substrate and subsequently measuring the patterns of isotope incorporation in downstream metabolic products, extensive information about the intracellular distribution of carbon flux can be obtained. This enables system-wide quantification of reversible, parallel, and cyclic metabolic pathways that would be otherwise unidentifiable based solely upon measurements of extracellular nutrient uptake and product excretion (Zamboni et al., 2009). While 13C MFA provides a rich source of phenotypic information, the application of this technique to mammalian systems presents unique challenges. In particular, the presence of subcellular compartmentation, complex media formulations, and slow labeling dynamics can lead to significant difficulties in experimental design and data interpretation (Zamboni, 2011)."""@en ; rdfs:subClassOf . nmrcv:NMR:1400286 a rdfs:Class ; rdfs:label "ChemMagnetics format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1400092 a rdfs:Class ; rdfs:label "y-axis unit" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000013 . nmrcv:NMR:1000378 a rdfs:Class ; rdfs:label "Food-Screener instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400198 . a rdfs:Class ; rdfs:label "microgram per milliliter" ; rdfs:comment "A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "region" ; rdfs:comment "A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids." ; rdfs:subClassOf . nmrcv:NMR:1000150 a rdfs:Class ; rdfs:label "scaling by forward linear prediction"@en ; rdfs:subClassOf nmrcv:NMR:1000068 . nmrcv:NMR:1000212 a rdfs:Class ; rdfs:label "BML-NMR identifier"@en ; rdfs:subClassOf nmrcv:NMR:1000022 . a rdfs:Class ; rdfs:label "second" ; rdfs:comment "A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom." ; rdfs:subClassOf . nmrcv:NMR:1400196 a rdfs:Class ; rdfs:label "NMR instrument parameter set" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400101 . a rdfs:Class ; rdfs:label "13C nuclear magnetic resonance spectroscopy" ; rdfs:comment "Spectroscopy where the energy states of 13C nuclei placed in a static magnetic field are interrogated by inducing transitions between the states via radio frequency irradiation. Each experiment consists of a sequence of radio frequency pulses with delay periods in between them." ; rdfs:subClassOf . nmrcv:NMR:1000122 a rdfs:Class ; rdfs:label "Bruker instrument model" ; rdfs:comment "Bruker instrument model." ; rdfs:subClassOf nmrcv:NMR:1000031 . nmrcv:NMR:1002009 a rdfs:Class ; rdfs:label "Conversion to JCAMP-DX" ; rdfs:comment "Conversion of a file format to JCAMP-DX file format." ; rdfs:subClassOf nmrcv:NMR:1000452 . nmrcv:NMR:1000862 a rdfs:Class ; rdfs:label "isoelectric point" ; rdfs:comment "The pH of a solution at which a charged molecule does not migrate in an electric field." ; rdfs:subClassOf nmrcv:NMR:1000861 . nmrcv:NMR:1000227 a rdfs:Class ; rdfs:label "Varian acquisition parameter file"@en ; rdfs:subClassOf nmrcv:NMR:1002006 . nmrcv:NMR:1000433 a rdfs:Class ; rdfs:label "ABX2 multiplet pattern"@en ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1000338 a rdfs:Class ; rdfs:label "complex64"@en ; rdfs:comment "This byte format uses a consecutive array of two 32bit float numbers to represent the real and imaginary part of the complex values." ; rdfs:subClassOf nmrcv:NMR:1000336 . nmrcv:NMR:1000100 a rdfs:Class ; rdfs:label "skyline projection"@en ; rdfs:subClassOf nmrcv:NMR:1400075 . nmrcv:NMR:1000111 a rdfs:Class ; rdfs:label "pure shift oneshot pulse sequence"@en ; rdfs:subClassOf nmrcv:NMR:1000110 . a rdfs:Class ; rdfs:label "chloroform" ; rdfs:comment "A one-carbon compound that is methane in which three of the hydrogens are replaced by chlorines." ; rdfs:subClassOf . nmrcv:NMR:1000049 a rdfs:Class ; rdfs:label "liquid" ; rdfs:comment "State if the sample is in liquid form." ; rdfs:subClassOf nmrcv:NMR:1000003 . a rdfs:Class ; rdfs:label "software" ; rdfs:comment "Software related to the recording or transformation of spectra." ; rdfs:subClassOf . nmrcv:NMR:1400256 a rdfs:Class ; rdfs:label "Bruker" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "derivatization agent"@en ; rdfs:comment "a derivatization agent is a chemical entity which is used in a material combination process known as derivatization and which consists in adding chemical groups to a molecule in an attempt to make it more volatile and therefore amenable to gas-chromatography mass spectrometry."@en ; rdfs:subClassOf . nmrcv:NMR:1000767 a rdfs:Class ; rdfs:label "FID format" ; rdfs:comment "Describes how the native spectrum identifiers are formated." ; rdfs:subClassOf nmrcv:NMR:1000577 . a rdfs:Class ; rdfs:label "N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide" ; rdfs:comment "An N-silyl compound that is N-methyltrifluoroacetamide in which the amide nitrogen is replaced by a tert-butyldimethylsilyl group." ; rdfs:subClassOf . nmrcv:NMR:1000303 a rdfs:Class ; rdfs:label "premium compact narrow bore magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000302 . a rdfs:Class ; rdfs:label "non-stationary isotopic labeling experiment"@en ; rdfs:comment "an isotopically non-stationary labeling experiment is a material processing used in fluxomics studies where cells cultures are grown in the presence of radiolabeled tracer compound for relatively short amount of time and samples collection before the system can reach an isotopic and metabolic steady state, and is therefore in a non-stationary phase. Such experiment are shorter to run that steady-state labeling experiment and usually allow to determine fluxes with increased precision."@en ; rdfs:subClassOf . nmrcv:NMR:1001922 a rdfs:Class ; rdfs:label "Digital Object Identifier (DOI)" ; rdfs:comment "DOI unique identifier." ; rdfs:subClassOf nmrcv:NMR:1000878 . a rdfs:Class ; rdfs:label "dose response curve" ; rdfs:comment "A data item of paired values, one indicating the dose of a material, the other quantitating a measured effect at that dose. The dosing intervals are chosen so that effect values be interpolated by a plotting a curve. " ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "nitrogen-14 atom" ; rdfs:comment "The stable isotope of nitrogen with relative atomic mass 14.003074. The most abundant (99.63 atom percent) isotope of naturally occurring nitrogen." ; rdfs:subClassOf . nmrcv:NMR:1400260 a rdfs:Class ; rdfs:label "tecmag" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1400009 a rdfs:Class ; rdfs:label "bucketed spectrum" ; rdfs:comment "def: A post-processed NMR spectrum in which the y-values of the datapoints have been summed based on periodic ranges of the x-axis values." ; rdfs:subClassOf nmrcv:NMR:1000200 . nmrcv:NMR:1400318 a rdfs:Class ; rdfs:label "Net CDF format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000933 a rdfs:Class ; rdfs:label "protein modification" ; rdfs:comment "Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation." ; rdfs:subClassOf nmrcv:NMR:1000884 . nmrcv:NMR:1000006 a rdfs:Class ; rdfs:label "sample concentration" ; rdfs:comment "Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used." ; rdfs:subClassOf nmrcv:NMR:1000548 . a rdfs:Class ; rdfs:label "isotope ratio mass spectrometry" ; rdfs:comment "Mass spectrometry where the relative abundance of isotopes in a sample is determined." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "scalar measurement datum"@en ; rdfs:comment "a scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label."@en ; rdfs:subClassOf . nmrcv:NMR:1000193 a rdfs:Class ; rdfs:label "ABX multiplet pattern"@en ; rdfs:comment "AMX, ABX and ABC patterns, and various related spin systems are very common in Proton NMR of organic molecules.When two of the protons of an AMX pattern approach each other to form an ABX pattern, the characteristic changes in intensities of a strongly coupled system (leaning) are seen, and, as the size of J approaches the value of νAB more complicated changes arise, so that the pattern can no longer be analyzed correctly by first order methods." ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1000041 a rdfs:Class ; rdfs:label "pyridine"@en ; rdfs:subClassOf nmrcv:NMR:1000036 . a rdfs:Class ; rdfs:label "HEPES buffer"@en ; rdfs:comment "HEPES buffer is a buffer which uses HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) as a zwitterionic organic chemical buffering agent ."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "iMAT"@en ; rdfs:comment "iMAT is a software integrating transcriptomic and proteomic data with genome-scale metabolic network models to predict enzyme metabolic flux. The tool is developed by Tomer Shlomi at The Isreal Institute of Technology"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "openFlux"@en ; rdfs:comment "OpenFLUX is a MATLAB-based modelling software for 13C metabolic flux analysis (MFA). Modern techniques like Elementary Metabolite Unit (EMU) framework, are implemented for efficient computing of fluxes."@en ; rdfs:subClassOf . nmrcv:NMR:1000234 a rdfs:Class ; rdfs:label "Varian SMS 50"@en ; rdfs:subClassOf nmrcv:NMR:1000233 . nmrcv:NMR:1400213 a rdfs:Class ; rdfs:label "NMR software" ; rdfs:comment "defneed" ; rdfs:subClassOf . nmrcv:NMR:1400264 a rdfs:Class ; rdfs:label "Doty Scientific" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "metabolism quenching using precooled PBS buffer" ; rdfs:comment "a type of metabolism extinction which uses refrigerated PBS buffer"@en ; rdfs:subClassOf . nmrcv:NMR:1000422 a rdfs:Class ; rdfs:label "3D bond line structure"@en ; rdfs:subClassOf nmrcv:NMR:1000421 . a rdfs:Class ; rdfs:label "data normalization objective"@en ; rdfs:comment """A normalization objective is a data transformation objective where the aim is to remove systematic sources of variation to put the data on equal footing in order to create a common base for comparisons."""@en ; rdfs:subClassOf . nmrcv:NMR:1000068 a rdfs:Class ; rdfs:label "data extrapolation using linear prediction"@en ; rdfs:subClassOf nmrcv:NMR:1000067 . nmrcv:NMR:1000831 a rdfs:Class ; rdfs:label "sample preparation information" ; rdfs:comment "Description of the preparation steps which took place before the measurement was performed." ; rdfs:subClassOf nmrcv:NMR:1000548 . nmrcv:NMR:1000202 a rdfs:Class ; rdfs:label "y-axis value type"@en ; rdfs:subClassOf nmrcv:NMR:1000201 . a rdfs:Class ; rdfs:label "zero-dimensional temporal region"@en ; rdfs:subClassOf . nmrcv:NMR:1400069 a rdfs:Class ; rdfs:label "exponential multiplication window function" ; rdfs:comment "The exponential function used to multiply a FID by to produce a desitred amount of line broadening." ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1000093 a rdfs:Class ; rdfs:label "NMRPipe software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . a rdfs:Class ; rdfs:label "hexachlorobenzene" ; rdfs:comment "A member of the class of chlorobenzenes that is benzene in which all of the hydrogens are replaced by chlorines. An agricultural fungicide introduced in the mid-1940s and formerly used as a seed treatment, its use has been banned since 1984 under the Stockholm Convention on Persistent Organic Pollutants." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "project-specific restriction" ; rdfs:comment "This requirement indicates that use is limited to use within an approved project." ; rdfs:subClassOf . nmrcv:NMR:1400303 a rdfs:Class ; rdfs:label "MACNMR format" ; rdfs:subClassOf nmrcv:NMR:1400285 . nmrcv:NMR:1000245 a rdfs:Class ; rdfs:label "Spinworks"@en ; rdfs:subClassOf nmrcv:NMR:1000244 . nmrcv:NMR:1400077 a rdfs:Class ; rdfs:label "summation projection" ; rdfs:comment """def: .A projection method that sums the intensities of a pre-processed 2D J-resolved NMR spectrum to obtain a projected spectrum. altdef: The adding of spectra together to produce a composite avergaed spectrum.""" ; rdfs:subClassOf nmrcv:NMR:1400075 . nmrcv:NMR:1000406 a rdfs:Class ; rdfs:label "left trapezoid limit"@en ; rdfs:comment " 0 a rdfs:Class ; rdfs:label "specimen role"@en ; rdfs:comment "a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation"@en ; rdfs:subClassOf . nmrcv:NMR:1000380 a rdfs:Class ; rdfs:label "JEOL Resonance 400MHz YH magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "isotopologue distribution analysis" ; rdfs:subClassOf . nmrcv:NMR:1000400 a rdfs:Class ; rdfs:label "Agilent NMR instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400059 . nmrcv:NMR:1000284 a rdfs:Class ; rdfs:label "2.5mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . nmrcv:NMR:1000879 a rdfs:Class ; rdfs:label "PubMed identifier" ; rdfs:comment "A unique identifier for a publication in the PubMed database (MIR:00000015)." ; rdfs:subClassOf nmrcv:NMR:1000878 . a rdfs:Class ; rdfs:label "metabolic flux rate matrix"@en ; rdfs:comment "a metabolic flux rate matrix is an information content entity which is defined as a 2 dimensional table associating chemical species with uptake and excretion rate in the cell" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "total suppression of sidebands pulse sequence" ; rdfs:comment "A pulse sequence used in magic angle spinning NMR experiments to remove additional signals resulting from spinning the sample too slowly to obtain a response composed solely of isotropic chemical shifts." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "gram" ; rdfs:comment "A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "averaging objective"@en ; rdfs:comment "An averaging objective is a data transformation objective where the aim is to perform mean calculations on the input of the data transformation."@en ; rdfs:subClassOf . nmrcv:NMR:1000208 a rdfs:Class ; rdfs:label "spectral projection axis"@en ; rdfs:subClassOf nmrcv:NMR:1000172 . nmrcv:NMR:1001954 a rdfs:Class ; rdfs:label "NMR acquisition parameter" ; rdfs:comment "Parameters used in the NMR spectrometry acquisition." ; rdfs:subClassOf nmrcv:NMR:1400101 . nmrcv:NMR:1000030 a rdfs:Class ; rdfs:label "13C spectrum reference compound"@en ; rdfs:subClassOf nmrcv:NMR:1400033 . nmrcv:NMR:1400116 a rdfs:Class ; rdfs:label "NMR quality check" ; rdfs:comment """def: The process of ensuring the quality of the raw data that results from an NMR analysis. synonym: NMR quality check""" ; rdfs:subClassOf . nmrcv:NMR:1400223 a rdfs:Class ; rdfs:label "high resolution probe" ; rdfs:comment """def:BRUKER BIOSPIN's experienced Research & Development group not only delivers top-performance probes for the more common experiments, but also a wealth of special probes for almost any application. For high resolution (HR) NMR we offer probes with a variety of important characteristics and features. defprov: Bruker website synonym: HR Probe""" ; rdfs:subClassOf nmrcv:NMR:1400231 . a rdfs:Class ; rdfs:label "quaternary ammonium dodecyl aminooxy reagent"@en ; rdfs:comment ""@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "mass" ; rdfs:comment "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." ; rdfs:subClassOf . nmrcv:NMR:1000104 a rdfs:Class ; rdfs:label "trapezoid window function"@en ; rdfs:comment """Functional form ( 0:t1 linear increase from 0.0 to 1.0, t1:size-t2 1.0 -t2: linear decrease from 1.0 to 0.0 / Parameters ( * data Array of spectral data., * t1 Left ramp length., * t2 Right ramp length., * inv Set True for inverse apodization.""" ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1000223 a rdfs:Class ; rdfs:label "chemical shift"@en ; rdfs:comment "Chemical shift is the resonance frequency of a nucleus related to a chemical shift standard. in ppm along x-axis" ; rdfs:subClassOf nmrcv:NMR:1000172 . a rdfs:Class ; rdfs:label "assessing study batch to batch variation"@en ; rdfs:comment "assessing study batch-to-batch variation is a within study variably quality control which specifically looks at how batching of data acquisition contributes to adding unwanted noice and how to account for it."@en ; rdfs:subClassOf . nmrcv:NMR:1000132 a rdfs:Class ; rdfs:label "Felix software"@en ; rdfs:subClassOf nmrcv:NMR:1000091 . a rdfs:Class ; rdfs:label "deoxyribonucleic acid" ; rdfs:comment "High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "consent code" ; rdfs:comment "A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Bilateria" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "micromolar per milligram of protein per hour"@en ; rdfs:comment "micromolar per milligram of protein per hour is a unit used to report metabolic fluxes. it denotes a measurement indicative of an amount of material over a period of time and normalized to the amount of protein present in the cellular fraction under consideration"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "institution-specific restriction" ; rdfs:comment "This requirement indicates that use is limited to use within an approved institution." ; rdfs:subClassOf . nmrcv:NMR:1000273 a rdfs:Class ; rdfs:label "JEOL ECS magnet"@en ; rdfs:subClassOf nmrcv:NMR:1000272 . a rdfs:Class ; rdfs:label "deuterium atom" ; rdfs:comment "The stable isotope of hydrogen with relative atomic mass 2.014102 and a natural abundance of 0.0115 atom percent (from Greek deltaepsilonupsilontauepsilonrhoomicronnu, second)." ; rdfs:subClassOf . nmrcv:NMR:1000129 a rdfs:Class ; rdfs:label "heteronuclear J-resolved spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1000086 . a rdfs:Class ; rdfs:label "mass spectrometry" ; rdfs:comment "Spectrometry where the sample is converted into gaseous ions which are characterised by their mass-to-charge ratio and relative abundance." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "normalization to multiple standard with cross contribution compensation"@en ; rdfs:comment "a normalization process used in mass spectrometry signal processing which takes into account the fact that analytes can interact with internal standards and impair accurate estimatation of these. The interaction phenomenon is known as cross contribution and needs to be compensated for."@en ; rdfs:subClassOf . nmrcv:NMR:1002005 a rdfs:Class ; rdfs:label "text file" ; rdfs:comment "Simple text file of peaks." ; rdfs:subClassOf nmrcv:NMR:1001459 . nmrcv:NMR:1000440 a rdfs:Class ; rdfs:label "nD spectrum"@de ; rdfs:subClassOf nmrcv:NMR:1000117 . a rdfs:Class ; rdfs:label "positive control role"@en ; rdfs:comment "positive control role is a role played by a material entity in the context of analytical work to provide a signal of known intensity indicative that the detectors and signal acquisition system operate nominally."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "trimethyl phosphate" ; rdfs:comment "A trialkyl phosphate that is the trimethyl ester of phosphoric acid." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "textual entity"@en ; rdfs:comment "A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "occurrent"@en ; rdfs:comment "An entity that has temporal parts and that happens, unfolds or develops through time."@en ; rdfs:subClassOf . nmrcv:NMR:1400122 a rdfs:Class ; rdfs:label "pulse sequence file" ; rdfs:comment "def: A reference to a file containing a specification of a pulse sequence." ; rdfs:subClassOf nmrcv:NMR:1400267 . a rdfs:Class ; rdfs:label "atom" ; rdfs:comment "A chemical entity constituting the smallest component of an element having the chemical properties of the element." ; rdfs:subClassOf . nmrcv:NMR:1000309 a rdfs:Class ; rdfs:label "triangle window function"@en ; rdfs:comment """Functional form: 0:loc linear increase/decrease from lHi to 1.0 loc: linear increase/decrease from 1.0 to rHi Parameters: * data Array of spectral data. * loc Location of apex, \"auto\" sets to middle. * lHi Left side starting height. * rHi Right side starting height. * inv Set True for inverse apodization.""" ; rdfs:subClassOf nmrcv:NMR:1400068 . a rdfs:Class ; rdfs:label "isotopic labeling with uniformly labeled tracer"@en ; rdfs:comment "Uniform labeling refers to biosynthetic labeling of all carbon, nitrogen, or hydrogen sites with stable isotopes. Uniform labeling of proteins with 15N is particularly convenient because of the strategic locations of nitrogens in the backbone and the absence of homonuclear couplings due to the intervening carbons. It is also possible to replace all of the carbons with 13C, although in this case the spectroscopy has to deal with the network of couplings among bonded carbons. Similarly, all of the hydrogens can be replaced with deuterons in order to attenuate the dipolar couplings among the hydrogens that often present complications and difficulties in the experiments."@en ; rdfs:subClassOf . nmrcv:NMR:1400314 a rdfs:Class ; rdfs:label "OceanOptics" ; rdfs:subClassOf nmrcv:NMR:1400255 . a rdfs:Class ; rdfs:label "fresh culture medium"@en ; rdfs:comment "a fresh culture medium is a culture medium which presents its nominal characteristisc in terms of molecular concentration of its components, pH, and physical chemical expected properties."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "zero-dimensional spatial region"@en ; rdfs:subClassOf . nmrcv:NMR:1000057 a rdfs:Class ; rdfs:label "angle of sinusoid"@en ; rdfs:subClassOf nmrcv:NMR:1400096 . nmrcv:NMR:1000085 a rdfs:Class ; rdfs:label "autoscaling"@en ; rdfs:subClassOf nmrcv:NMR:1000080 . nmrcv:NMR:1400297 a rdfs:Class ; rdfs:label "Varian VNMR format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "collection at specific cell culture passage"@en ; rdfs:comment "collection at specific cell culture passage is a kind of specimen collection which occurs after a strictly defined number of cell culture splitting, defined to control how many cell divisions have been performed."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "ribonucleic acid" ; rdfs:comment "High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins." ; rdfs:subClassOf . nmrcv:NMR:1400033 a rdfs:Class ; rdfs:label "chemical shift standard" ; rdfs:comment "def: A compound that is added to an NMR sample to enable the alignment of spectra. The power of NMR is that for most nuclei the NMR frequency changes very slightly with different molecular environment or chemical bonding. These shifts are very small, on the order of 1 part in 10+9. This is referred to as \"Chemical Shift.\" Tables of chemical shifts are tabulated and used to determine molecular structure. Combining NMR chemical shift information with other NMR information such as peak integration, coupling constants and Nuclear Overhauser Enhancement (NOE) can result in complete three-dimensional molecular structures of molecules in solution without using X-ray crystallography." ; rdfs:subClassOf nmrcv:NMR:1400032 . nmrcv:NMR:1400112 a rdfs:Class ; rdfs:label "WaveWat" ; rdfs:comment "def: A computational method that archieves water suppression via wavlet multi resolution analysis." ; rdfs:subClassOf nmrcv:NMR:1400108 . a rdfs:Class ; rdfs:label "signal intensity"@en ; rdfs:comment "signal intensity is a kind of measurement providing an estimate of the strength of a phenomena as it is recorded. For digital detector instrument, the signal intensity is usually a electric intensity or a field strength of the electromagnetic wave transmitting a signal." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "flip flop spectroscopy" ; rdfs:comment "A sequence of composite pulses designed to allow isotropic mixing of magnetisation between nuclei. For the pulse sequence see J. Magn.Reson., (1988), 77, pg 274." ; rdfs:subClassOf . nmrcv:NMR:1000302 a rdfs:Class ; rdfs:label "Varian magnet"@en ; rdfs:subClassOf nmrcv:NMR:1400185 . a rdfs:Class ; rdfs:label "study design independent variable"@en ; rdfs:comment "a directive information entity that is part of a study design. Independent variables are entities whose values are selected to determine its relationship to an observed phenomenon (the dependent variable). In such an experiment, an attempt is made to find evidence that the values of the independent variable determine the values of the dependent variable (that which is being measured). The independent variable can be changed as required, and its values do not represent a problem requiring explanation in an analysis, but are taken simply as given. The dependent variable on the other hand, usually cannot be directly controlled"@en ; rdfs:subClassOf . nmrcv:NMR:1000035 a rdfs:Class ; rdfs:label "tetramethylammonium bromide"@en ; rdfs:subClassOf nmrcv:NMR:1000030 , nmrcv:NMR:1000036 . nmrcv:NMR:1400257 a rdfs:Class ; rdfs:label "Varian" ; rdfs:subClassOf nmrcv:NMR:1400255 . nmrcv:NMR:1400230 a rdfs:Class ; rdfs:label "Delta NMR software" ; rdfs:subClassOf nmrcv:NMR:1400229 . a rdfs:Class ; rdfs:label "material separation function"@en ; rdfs:comment "A material separation function is a function that increases the resolution between two or more material entities. The to distinction between the entities is usually based on some associated physical quality."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "flavonoids" ; rdfs:comment "Any organic molecular entity whose stucture is based on derivatives of a phenyl-substituted 1-phenylpropane possessing a C15 or C16 skeleton, or such a structure which is condensed with a C6-C3 lignan precursors. The term is a 'superclass' comprising all members of the classes of flavonoid, isoflavonoid, neoflavonoid, chalcones, dihydrochalcones, aurones, pterocarpan, coumestans, rotenoid, flavonolignan, homoflavonoid and flavonoid oligomers. Originally restricted to natural products, the term is also applied to synthetic compounds related to them." ; rdfs:subClassOf . nmrcv:NMR:1000429 a rdfs:Class ; rdfs:label " 2,2-Dimethyl-2-silapentane-5-sulfonate"@en ; rdfs:subClassOf nmrcv:NMR:1000167 . nmrcv:NMR:1000885 a rdfs:Class ; rdfs:label "protein accession" ; rdfs:comment "Accession number for a specific protein in a database." ; rdfs:subClassOf nmrcv:NMR:1000884 . a rdfs:Class ; rdfs:label "isoprenoid" ; rdfs:comment "Any lipid formally derived from isoprene (2-methylbuta-1,3-diene), the skeleton of which can generally be discerned in repeated occurrence in the molecule. The skeleton of isoprenoids may differ from strict additivity of isoprene units by loss or shift of a fragment, commonly a methyl group. The class includes both hydrocarbons and oxygenated derivatives." ; rdfs:subClassOf . nmrcv:NMR:1400224 a rdfs:Class ; rdfs:label "high resolution probe with ATM" ; rdfs:comment """def: The ATM option for AVANCE spectrometers is available for: Double resonance probes in fixed-frequency and broadband tunable configurations with either direct or indirect detection. Thus, for multinuclear operation, as often required for applications in inorganic chemistry, ATM facilitates the accurate setting of 90° pulsewidths on both observe and decoupling channels for each chosen nucleus and each individual sample - even with full automation. Triple resonance probes in fixed-frequency configurations, as typically used for inverse detection with high-field systems. defprov: Bruker website synonym: High Resolution Probes with Automatic Tuning and Matching, HR probe with ATM""" ; rdfs:subClassOf nmrcv:NMR:1400223 . a rdfs:Class ; rdfs:label "genetic studies only" ; rdfs:comment "This secondary category consent code indicates that use is limited to genetic studies only (i.e., no phenotype-only research)" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "specimen"@en ; rdfs:comment "A material entity that has the specimen role."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "milliliter" ; rdfs:comment "A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter." ; rdfs:subClassOf . nmrcv:NMR:1000298 a rdfs:Class ; rdfs:label "JEOL FID file"@en ; rdfs:subClassOf nmrcv:NMR:1400119 . a rdfs:Class ; rdfs:label "reference compound mix"@en ; rdfs:comment "a reference compound mix is a material entity which consists of composite solution of several molecular entities acting as reference compound and present in known quantity in the mixture, with which to establish a comparison, be used for calibration or quality control or quantitation estimate for unknown compound in spectral analysis such as NMR or mass spectrometry"@en ; rdfs:subClassOf . nmrcv:NMR:1000238 a rdfs:Class ; rdfs:label "reference compound NMR spectrum"@en ; rdfs:comment "e.g as in HMDB" ; rdfs:subClassOf nmrcv:NMR:1002007 . a rdfs:Class ; rdfs:label "normalized data set"@en ; rdfs:comment "A data set that is produced as the output of a normalization data transformation."@en ; rdfs:subClassOf . nmrcv:NMR:1000171 a rdfs:Class ; rdfs:label "signal line width at five percent intensity"@en ; rdfs:subClassOf nmrcv:NMR:1000170 . nmrcv:NMR:1000259 a rdfs:Class ; rdfs:label "peak assignment"@en ; rdfs:subClassOf nmrcv:NMR:1000015 . nmrcv:NMR:1400320 a rdfs:Class ; rdfs:label "Bruker UXNMR/XWIN-NMR format" ; rdfs:subClassOf nmrcv:NMR:1400285 . a rdfs:Class ; rdfs:label "one-dimensional 1H nuclear magnetic resonance spectroscopy" ; rdfs:comment "Spectroscopy where the energy states of 1H nuclei placed in a static magnetic field are interrogated by inducing transitions between the states via radio frequency irradiation. Each experiment consists of a sequence of radio frequency pulses with delay periods in between them, and the spectrum is obtained by plotting chemical shift vs. frequency." ; rdfs:subClassOf . nmrcv:NMR:1000569 a rdfs:Class ; rdfs:label "SHA-1" ; rdfs:comment "SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity." ; rdfs:subClassOf nmrcv:NMR:1000561 . a rdfs:Class ; rdfs:label "continuant fiat boundary"@en ; rdfs:comment "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "magnetic resonance method" ; rdfs:comment "Any technique which detects the response of spins to a perturbing magnetic field." ; rdfs:subClassOf . nmrcv:NMR:1400010 a rdfs:Class ; rdfs:label "peak-picked spectrum" ; rdfs:comment "defneed" ; rdfs:subClassOf nmrcv:NMR:1000200 . nmrcv:NMR:1000090 a rdfs:Class ; rdfs:label "open source NMR software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000530 a rdfs:Class ; rdfs:label "file format conversion" ; rdfs:comment "Conversion of one file format to another." ; rdfs:subClassOf . nmrcv:NMR:1000589 a rdfs:Class ; rdfs:label "contact email" ; rdfs:comment "Email address of the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . a rdfs:Class ; rdfs:label "direct metabolism quenching by solvent"@en ; rdfs:comment "direct metabolism quenching by solvent is a kind biochemical reaction extinction process which relies on organic solvents to denature enzymatic machinery and inactivate it."@en ; rdfs:subClassOf . nmrcv:NMR:1000249 a rdfs:Class ; rdfs:label "Matlab to nmrML converter"@en ; rdfs:comment "By Batman/ Tim Ebbels Group"@en ; rdfs:subClassOf nmrcv:NMR:1000211 . a rdfs:Class ; rdfs:label "mass unit" ; rdfs:comment "A unit which is a standard measure of the amount of matter/energy of a physical object." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "collaboration required" ; rdfs:comment "This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s)." ; rdfs:subClassOf . nmrcv:NMR:1000074 a rdfs:Class ; rdfs:label "peak shape fitting"@en ; rdfs:subClassOf nmrcv:NMR:1000258 . a rdfs:Class ; rdfs:label "material transformation objective"@en ; rdfs:comment "an objective specifiction that creates an specific output object from input materials."@en ; rdfs:subClassOf . nmrcv:NMR:1000898 a rdfs:Class ; rdfs:label "data standard" ; rdfs:comment "Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "carbon-12 atom" ; rdfs:subClassOf . nmrcv:NMR:1000169 a rdfs:Class ; rdfs:label "CIMR MI standard"@en ; rdfs:subClassOf nmrcv:NMR:1000900 . a rdfs:Class ; rdfs:label "trifluoroacetylation"@en ; rdfs:comment "a kind of derivatization which results in the addition of trifluoroacetyl group to molecules in an attempt to make ions derived from it more volatile in a gas-chromatography experiment."@en ; rdfs:subClassOf . nmrcv:NMR:1000861 a rdfs:Class ; rdfs:label "chemical compound attribute" ; rdfs:comment "A describable property of a chemical compound." ; rdfs:subClassOf nmrcv:NMR:1000547 . a rdfs:Class ; rdfs:label "cell volume"@en ; rdfs:comment "average cell volume is a measurement datum used to report over physcal occupancy of cells under study. This information is used for as input for kinetic modeling."@en ; rdfs:subClassOf . nmrcv:NMR:1002016 a rdfs:Class ; rdfs:label "bin start" ; rdfs:comment "Bin start." ; rdfs:subClassOf nmrcv:NMR:1002014 . nmrcv:NMR:1000418 a rdfs:Class ; rdfs:label "line representation"@en ; rdfs:subClassOf nmrcv:NMR:1000864 . a rdfs:Class ; rdfs:label "material combination" ; rdfs:comment "is a material processing with the objective to combine two or more material entities as input into a single material entity as output." ; rdfs:subClassOf . nmrcv:NMR:1000182 a rdfs:Class ; rdfs:label "Bayesil software"@en ; rdfs:comment "Bayesil is a web system that automatically identifies and quantifies metabolites using 1D 1H NMR spectra of ultra-filtered plasma, serum or cerebrospinal fluid. The NMR spectra must be collected in a standardized fashion for Bayesil to perform optimally. Bayesil first performs all spectral processing steps, including Fourier transformation, phasing, solvent filtering, chemical shift referencing, baseline correction and reference line shape convolution automatically. It then deconvolutes the resulting NMR spectrum using a reference spectral library, which here contains the signatures of more than 60 metabolites. This deconvolution process determines both the identity and quantity of the compounds in the biofluid mixture."@en ; rdfs:subClassOf nmrcv:NMR:1000090 . a rdfs:Class ; rdfs:label "retention time" ; rdfs:comment "Retention time (RT) is a measure of the time taken for a solute to pass through a chromatography column. It is calculated as the time from injection to detection." ; rdfs:subClassOf . nmrcv:NMR:1400171 a rdfs:Class ; rdfs:label "hadamard total correlation spectroscopy pulse sequence" ; rdfs:comment """defneed synonym: 2D hadamard TOCSY""" ; rdfs:subClassOf nmrcv:NMR:1000220 . nmrcv:NMR:1000046 a rdfs:Class ; rdfs:label "heteronuclear decoupling"@en ; rdfs:subClassOf nmrcv:NMR:1000044 . nmrcv:NMR:1400066 a rdfs:Class ; rdfs:label "pre-acquisition water suppression" ; rdfs:comment """tempdef: A technique used to suppress the water resonance peak in a spectrum. Suppression of the strong solvent signal is necessary in order to obtain high signal to noise for the peaks of the sample under investiogation, e.g. protein peaks. defprov: Daniel Schober""" ; rdfs:subClassOf nmrcv:NMR:1000014 . nmrcv:NMR:1000883 a rdfs:Class ; rdfs:label "protein short name" ; rdfs:comment "A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN)." ; rdfs:subClassOf nmrcv:NMR:1000884 . nmrcv:NMR:1400167 a rdfs:Class ; rdfs:label "carr purcell meiboom gill pulse sequence" ; rdfs:comment """tempdef: A modification of Carr-Purcell RF pulse sequence with 90° phase shift in the rotating frame of reference between the 90° pulse and the subsequent 180° pulses to reduce accumulating effects of imperfections in the 180° pulses. Suppression of effects of pulse error accumulation can alternatively be achieved by alternating phases of the 180° pulses by 180°. defprov: Daniel Schober synonym: 1D CPMG""" ; rdfs:subClassOf nmrcv:NMR:1400169 . nmrcv:NMR:1000158 a rdfs:Class ; rdfs:label "automatic baseline recognition"@en ; rdfs:subClassOf nmrcv:NMR:1400074 . a rdfs:Class ; rdfs:label "external standard role"@en ; rdfs:comment "external standard role is a role played by a material entity used as a reference point for signal acquisition. this is a type of positive control role"@en ; rdfs:subClassOf . nmrcv:NMR:1000288 a rdfs:Class ; rdfs:label "1.7mm Match tube"@en ; rdfs:subClassOf nmrcv:NMR:1000267 . a rdfs:Class ; rdfs:label "metabolomics investigation"@en ; rdfs:comment "an investigation which focused on measuring small biological molecules known as metabolite with the goal of understanding biochemical process underlying normal or pathological biological processes"@en ; rdfs:subClassOf . nmrcv:NMR:1400206 a rdfs:Class ; rdfs:label "Bruker BEST NMR" ; rdfs:comment """def: The introduction of biological screening and combinatorial chemistry for chemical synthesis has also introduced new requirements for NMR automation, e.g., the use of well plates for sample input, increased demands on throughput, and the need for quick and simple interpretation of the acquired NMR data. defprov: Bruker website synonym: Bruker Efficient Sample Transfer NMR""" ; rdfs:subClassOf nmrcv:NMR:1400209 . a rdfs:Class ; rdfs:label "sodium acetate" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "AbsoluteIDQ p400 Kit"@en ; rdfs:comment "AbsoluteIDQ p400 kit is a reagent system manufactured by Biocrates AG, Austria which allows the targeted metabolite profiling of up to 400 distinct molecular entities with quantitative accuracy on human plasma samples."@en ; rdfs:subClassOf . nmrcv:NMR:1400019 a rdfs:Class ; rdfs:label "hadamard frequency" ; rdfs:comment "def: A frequency used during Hadamard encoding." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1400051 a rdfs:Class ; rdfs:label "time proportional phase incrementation" ; rdfs:comment """defneed synonym: TPPI""" ; rdfs:subClassOf nmrcv:NMR:1400048 . a rdfs:Class ; rdfs:label "de facto standard" ; rdfs:comment "A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard." ; rdfs:subClassOf . nmrcv:NMR:1400212 a rdfs:Class ; rdfs:label "NMR sample holder" ; rdfs:comment "def: A NMR sample holder is the part of an NMR instrument, which carries the NMR probe,sample tube and the NMR sample." ; rdfs:subClassOf nmrcv:NMR:1400011 . nmrcv:NMR:1000136 a rdfs:Class ; rdfs:label "XPLOR-NIH software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000342 a rdfs:Class ; rdfs:label "AB2 multiplet pattern"@en ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1000142 a rdfs:Class ; rdfs:label "MADNMR software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000128 a rdfs:Class ; rdfs:label "homonuclear J-resolved spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1000086 . nmrcv:NMR:1000143 a rdfs:Class ; rdfs:label "Pronto software"@en ; rdfs:subClassOf nmrcv:NMR:1400213 . a rdfs:Class ; rdfs:label "ammonia" ; rdfs:comment "An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "quality control"@en ; rdfs:comment "quality control is a process which aims to ensure that procedures for producing a material or a measurement remain within established error tolerance margins. Quality control often relies on the use of references or standards against which readings are gauged. those standards can be 'negative control' which should produce in an absence of signal or 'positive control', which should result in the presence of a signal of known quality and intensity."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "double-stranded DNA" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "generically dependent continuant"@en ; rdfs:comment "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "evaluant role"@en ; rdfs:comment "a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role"@en ; rdfs:subClassOf . a rdf:Property ; rdfs:label "inheres in"@en ; rdfs:comment "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence"@en ; rdfs:range . nmrcv:NMR:1000331 a rdfs:Class ; rdfs:label "NMR buffer"@en ; rdfs:comment "Use Chebi entities here." ; rdfs:subClassOf . nmrcv:NMR:1000131 a rdfs:Class ; rdfs:label "NMR star software"@en ; rdfs:subClassOf nmrcv:NMR:1000090 . nmrcv:NMR:1000003 a rdfs:Class ; rdfs:label "sample state information" ; rdfs:comment "The chemical phase of a pure sample, or the state of a mixed sample." ; rdfs:subClassOf nmrcv:NMR:1000548 . a rdfs:Class ; rdfs:label "general research use and clinical care" ; rdfs:comment "This primary category consent code indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry." ; rdfs:subClassOf . nmrcv:NMR:1400235 a rdfs:Class ; rdfs:label "Varian MERCURY" ; rdfs:subClassOf nmrcv:NMR:1400234 . nmrcv:NMR:1000277 a rdfs:Class ; rdfs:label "VnmrJ software"@en ; rdfs:subClassOf nmrcv:NMR:1000276 . nmrcv:NMR:1001756 a rdfs:Class ; rdfs:label "contact fax number" ; rdfs:comment "Fax number for the contact person or organization." ; rdfs:subClassOf nmrcv:NMR:1000585 . a rdfs:Class ; rdfs:label "centrally registered identifier registry"@en ; rdfs:comment "A CRID registry is a dataset of CRID records, each consisting of a CRID symbol and additional information which was recorded in the dataset through a assigning a centrally registered identifier process."@en ; rdfs:subClassOf . nmrcv:NMR:1000070 a rdfs:Class ; rdfs:label "FID fourier transformation"@en ; rdfs:comment "The mathematical conversion of time-resolved FID raw data into frequency resolved NMR spectra (frequency-resolved NMR data) by means of fourier transformation of coordinate systems." ; rdfs:subClassOf nmrcv:NMR:1400041 . nmrcv:NMR:1000024 a rdfs:Class ; rdfs:label "acetonitrile"@en ; rdfs:subClassOf nmrcv:NMR:1000026 . a rdfs:Class ; rdfs:label "objective specification"@en ; rdfs:comment "a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved."@en ; rdfs:subClassOf . nmrcv:NMR:1000310 a rdfs:Class ; rdfs:label "acquisition log file"@en ; rdfs:comment "The acquisition log file is a created during an acquisition and could useful for debugging an acquisition that has gone awry." ; rdfs:subClassOf nmrcv:NMR:1400267 . nmrcv:NMR:1400014 a rdfs:Class ; rdfs:label "NMR probe" ; rdfs:comment """def: Part of an NMR instrument that detects the signals emitted from a sample. No single probe can perform the full range of experiments, and probes that are designed to perform more than one type of measurement usually suffer from performance compromises. The probe represents a rather fragile “single point of failure” that can render an NMR system completely unusable if the probe is dropped or otherwise damaged. Probes are usually characterised by Sample diameter and Frequency. altdef: The instrument that transmits and recieves radiofrequency to and from the NMR sample.""" ; rdfs:subClassOf nmrcv:NMR:1400011 . a rdfs:Class ; rdfs:label "corrected m/z" ; rdfs:comment "a m over z ratio which underwent a correction data transformation to take into account variations caused by a specific aspects of the data acquisition process." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "3D cell culture"@en ; rdfs:comment "a 3D cell culture is a cultured cell population grown in conditions which better mimicks in-vivo growth environment (i.e. more effectively than a 2D culture) allowing more complex recapitulation of cellular processes. These cell cultures are achieved by used of scaffolding agents." ; rdfs:subClassOf . nmrcv:NMR:1000585 a rdfs:Class ; rdfs:label "contact attribute" ; rdfs:comment "Details about a person or organization to contact in case of concern or discussion about the file." ; rdfs:subClassOf nmrcv:NMR:1000547 . nmrcv:NMR:1000165 a rdfs:Class ; rdfs:label "buffer pH"@en ; rdfs:subClassOf nmrcv:NMR:1002011 . a rdfs:Class ; rdfs:label "chlorine atom" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "m over z" ; rdfs:comment "the m/z notation is used for the independent variable in a mass spectrum. The mass-to-charge ratio (m/Q) is a physical quantity that is most widely used in the electrodynamics of charged particles, e.g. in electron optics and ion optics. It appears in the scientific fields of electron microscopy, cathode ray tubes, accelerator physics, nuclear physics, Auger electron spectroscopy, cosmology and mass spectrometry." ; rdfs:subClassOf . nmrcv:NMR:1400148 a rdfs:Class ; rdfs:label "jump and return pulse sequence" ; rdfs:comment "tempdef: A jump and return pulse sequence method is a water suppression method that uses a defined pulse sequence to make fast exchanging protons visible." ; rdfs:subClassOf nmrcv:NMR:1400037 . nmrcv:NMR:1000425 a rdfs:Class ; rdfs:label "molfile"@en ; rdfs:subClassOf nmrcv:NMR:1000861 . a rdfs:Class ; rdfs:comment "An unconstrained type or object" . nmrcv:NMR:1400029 a rdfs:Class ; rdfs:label "decoupled nucleus flag" ; rdfs:comment "def: An indication of whether the nucleus being studied is the acquitsition nucleus." ; rdfs:subClassOf nmrcv:NMR:1001954 . nmrcv:NMR:1000364 a rdfs:Class ; rdfs:label "local baseline correction"@en ; rdfs:comment "as needed for nmrProcFlow" ; rdfs:subClassOf nmrcv:NMR:1400074 . nmrcv:NMR:1000027 a rdfs:Class ; rdfs:label "2,2-Dimethyl-2-silapentane-5-sulfonate"@en ; rdfs:subClassOf nmrcv:NMR:1000026 . nmrcv:NMR:1000306 a rdfs:Class ; rdfs:label "modified Gaussian window function"@en ; rdfs:comment """Functional form: gmb(x_i) = exp(-a*i - b*i*i) Parameters: * data Array of spectral data. * a Exponential term. * b Gaussian term. * inv Set True for inverse apodization.""" ; rdfs:subClassOf nmrcv:NMR:1400070 . a rdfs:Class ; rdfs:label "quantitative confidence value"@en ; rdfs:comment "A data item which is used to indicate the degree of uncertainty about a measurement."@en ; rdfs:subClassOf . nmrcv:NMR:1000321 a rdfs:Class ; rdfs:label "XEASY software"@en ; rdfs:comment "A new program package, XEASY, was written for interactive computer support of the analysis of NMR spectra for three-dimensional structure determination of biological macromolecules. XEASY was developed for work with 2D, 3D and 4D NMR data sets. It includes all the functions performed by the precursor program EASY, which was designed for the analysis of 2D NMR spectra, i.e., peak picking and support of sequence-specific resonance assignments, cross-peak assignments, cross-peak integration and rate constant determination for dynamic processes."@en ; rdfs:subClassOf nmrcv:NMR:1400213 . nmrcv:NMR:1000914 a rdfs:Class ; rdfs:label "tab delimited text file" ; rdfs:comment "A file that has two or more columns of tabular data where each column is separated by a TAB character." ; rdfs:subClassOf nmrcv:NMR:1002005 . nmrcv:NMR:1400228 a rdfs:Class ; rdfs:label "JNM-ECA Series FT NMR instrument" ; rdfs:comment "The JNM-ECA series is an FT NMR spectrometer developed making full use of the latest digital and high frequency technology. This high performance, sophisticated spectrometer designed to take advantage of high field magnet development to include 1GHz. Innovative features to support not only the conventional NMR applications such as structural analysis of molecules and evaluation of materials but also future progress of science and technologies including research for development of new drugs, postgenome research and development of new materials." ; rdfs:subClassOf nmrcv:NMR:1400226 . nmrcv:NMR:1000346 a rdfs:Class ; rdfs:label "decimation factor"@en ; rdfs:comment "DECIM - decimation factor is a (bruker) acquisition parameter that captures the number of raw analog points that are averaged in order to obtain a digital signal recorded in the fid." ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "data transformation"@en ; rdfs:comment "A planned process that produces output data from input data."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "primary structure of DNA macromolecule" ; rdfs:comment "a quality of a DNA molecule that inheres in its bearer due to the order of its DNA nucleotide residues." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "multiple testing correction objective" ; rdfs:comment "A multiple testing correction objectives is a data transformation objective where the aim is to correct for a set of statistical inferences considered simultaneously" ; rdfs:subClassOf . nmrcv:NMR:1000386 a rdfs:Class ; rdfs:label "NMR instrument vendor"@en ; rdfs:comment "Any organisation ort person that sells NMR instruments to customers." ; rdfs:subClassOf nmrcv:NMR:1000496 . nmrcv:NMR:1000081 a rdfs:Class ; rdfs:label "total spectral area scaling"@en ; rdfs:subClassOf nmrcv:NMR:1000078 . a rdfs:Class ; rdfs:label "high performance liquid chromatography"@en ; rdfs:comment "high performance liquid chromatography is a kind of material component separation process which uses a mobile phase in liquid form to force a mixture of chemical through chromatography columns and associated detecting equipment, which may be a mass spectrometry in LC-MS applications. the notion of high performance comes from the fact that higher pressure is applied to the liquid phase to pass material with adsorbant properties. Those may vary depending on the composition of the mobile phase (gradients between 2 solutions may be used)."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "zero-dimensional continuant fiat boundary"@en ; rdfs:subClassOf . nmrcv:NMR:1000255 a rdfs:Class ; rdfs:label "Lorentz Gaussian window function"@en ; rdfs:comment """Functional form: gm(x_i) = exp(e - g*g) Where: e = pi*i*g1 g = 0.6*pi*g2*(g3*(size-1)-i) Parameters: * data Array of spectral data. * g1 Inverse exponential width. * g2 Gaussian broaden width. * g3 Location of gauss maximum. * inv Set True for inverse apodization.""" ; rdfs:subClassOf nmrcv:NMR:1400068 . nmrcv:NMR:1400088 a rdfs:Class ; rdfs:label "number of steady state scans" ; rdfs:comment "def: The number of scans whose data is not summed to create the data set for an NMR sample, but that are carried out to establish the steady-state of relaxation for the nuclei." ; rdfs:subClassOf nmrcv:NMR:1400087 . nmrcv:NMR:1000016 a rdfs:Class ; rdfs:label "Hexafluorobenzene"@en ; rdfs:subClassOf nmrcv:NMR:1000167 , nmrcv:NMR:1000330 . nmrcv:NMR:1000357 a rdfs:Class ; rdfs:label "AA'XX' multiplet pattern"@en ; rdfs:subClassOf nmrcv:NMR:1400305 . nmrcv:NMR:1400008 a rdfs:Class ; rdfs:label "projected spectrum" ; rdfs:comment """tempdef: The data matrix a spectrum consists of can be projected from a higher dimension onto a lower dimension, e.g. a 3D NMR spectrum can be converted (projected) into a 2D NMR spectrum. defprov: Daniel Schober""" ; rdfs:subClassOf nmrcv:NMR:1000200 . a rdfs:Class ; rdfs:label "selective ion monitoring" ; rdfs:comment "Mass spectrometry where the intensities of one or more specific ion beams are recorded rather than the entire mass spectrum." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "specimen collection process" ; rdfs:comment "A planned process with the objective of collecting a specimen." ; rdfs:subClassOf . nmrcv:NMR:1000397 a rdfs:Class ; rdfs:label "Varian UnityInova instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400234 . nmrcv:NMR:1000153 a rdfs:Class ; rdfs:label "digital filtering"@en ; rdfs:subClassOf nmrcv:NMR:1001954 . a rdfs:Class ; rdfs:label "process profile"@en ; rdfs:comment "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "average value"@en ; rdfs:comment "A data item that is produced as the output of an averaging data transformation and represents the average value of the input data."@en ; rdfs:subClassOf . nmrcv:NMR:1400189 a rdfs:Class ; rdfs:label "US 2" ; rdfs:subClassOf nmrcv:NMR:1400186 . nmrcv:NMR:1000317 a rdfs:Class ; rdfs:label "NMR spectrum file"@en ; rdfs:subClassOf nmrcv:NMR:1400267 . a rdfs:Class ; rdfs:label "phosphoric acid" ; rdfs:comment "A phosphorus oxoacid that consits of one oxo and three hydroxy groups joined covalently to a central phosphorus atom." ; rdfs:subClassOf . nmrcv:NMR:1400141 a rdfs:Class ; rdfs:label "water suppression enhanced through T1 effects" ; rdfs:comment """tempdef: An improved water-suppression technique called WET (water suppression enhanced through T1 effects), developed from a Bloch equation analysis of the longitudinal magnetization over the T1 and B1 ranges of interest, achieves T1- and B1-insensitive suppression with four RF pulses, each having a numerically optimized flip angle. Once flip angles have been optimized for a given sequence, time-consuming flip-angle adjustments during clinical examinations are eliminated. defprov: Daniel Schober synonym: WET""" ; rdfs:subClassOf nmrcv:NMR:1400037 . a rdfs:Class ; rdfs:label "indirect assignment to standard" ; rdfs:comment "chemical entity assignment by indirect assignment to standards is a data transformation process which uses spectral information from a known compound (ie. the standard) to infer chemical properties about another compound found in the sample." ; rdfs:subClassOf . nmrcv:NMR:1000154 a rdfs:Class ; rdfs:label "3D strip plot generation"@en ; rdfs:comment """A spectrum vizualization method for 3D nmr spectra, assisting assignments for large sequential molecules, i.e. Proteins. The first two axis in the plot represent the ppms along the two acquisition nuclei, and a third dimension captures the sequential molecule order for the third nucleus.""" ; rdfs:subClassOf nmrcv:NMR:1000435 . nmrcv:NMR:1400109 a rdfs:Class ; rdfs:label "hankel singular value decomposition" ; rdfs:comment """def: This Method removes the residual water and its side lobes, thereby reducing the baseline for the metabolites of interest and allowing subsequent data analysis using more sophisticated nonlinear least squares algorithms. synonym: HSVD""" ; rdfs:subClassOf nmrcv:NMR:1400108 . nmrcv:NMR:1000335 a rdfs:Class ; rdfs:label "data compression scheme"@en ; rdfs:subClassOf nmrcv:NMR:1000343 . a rdfs:Class ; rdfs:label "triphenylphosphane oxide" ; rdfs:comment "A phosphine oxide in which the substituents on phosphorus are three phenyl groups." ; rdfs:subClassOf . nmrcv:NMR:1000115 a rdfs:Class ; rdfs:label "3D spectrum"@en ; rdfs:subClassOf nmrcv:NMR:1000117 . a rdfs:Class ; rdfs:label "oximation"@en ; rdfs:comment "a kind of derivatization which results in the addition of oxime group to molecules in an attempt to make ions derived from it more volatile in a gas-chromatography experiment."@en ; rdfs:subClassOf . nmrcv:NMR:1000893 a rdfs:Class ; rdfs:label "peptide group label" ; rdfs:comment "An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label." ; rdfs:subClassOf nmrcv:NMR:1000887 . a rdfs:Class ; rdfs:label "Bacteria" ; rdfs:subClassOf . nmrcv:NMR:1400022 a rdfs:Class ; rdfs:label "ninety degree pulse duration" ; rdfs:comment "The duration of the excitation pulse needed to rotate the magnetisation vector by 90 degrees." ; rdfs:subClassOf nmrcv:NMR:1000190 . a rdfs:Class ; rdfs:label "geographic location" ; rdfs:comment "A reference to a place on the Earth, by its name or by its geographical location." ; rdfs:subClassOf . nmrcv:NMR:1001926 a rdfs:Class ; rdfs:label "curator keyword" ; rdfs:comment "Keyword assigned by a data curator." ; rdfs:subClassOf nmrcv:NMR:1000034 . a rdfs:Class ; rdfs:label "Amniota" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "participant under investigation role"@en ; rdfs:comment "A role that is realized through the execution of a study design in which the bearer of the role participates and in which data about that bearer is collected." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "correlation spectroscopy" ; rdfs:comment "A type of homonuclear NMR spectroscopy where a second frequency dimension is employed to disperse the signals and reveal correlations between nuclei which are J-coupled (usually \\leq 3 bonds apart)." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "reagent role"@en ; rdfs:comment "A role inhering in a biological or chemical entity that is intended to be applied in a scientific technique to participate (or have molecular components that participate) in a chemical reaction that facilitates the generation of data about some entity distinct from the bearer, or the generation of some specified material output distinct from the bearer."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "p-value"@en ; rdfs:comment "A quantitative confidence value that represents the probability of obtaining a result at least as extreme as that actually obtained, assuming that the actual value was the result of chance alone."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "genetic population background information"@en ; rdfs:comment "a genetic characteristics information which is a part of genotype information that identifies the population of organisms"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "Mammalia" ; rdfs:subClassOf . nmrcv:NMR:1000229 a rdfs:Class ; rdfs:label "acqus"@en ; rdfs:subClassOf nmrcv:NMR:1000230 . a rdfs:Class ; rdfs:label "error correction data transformation"@en ; rdfs:comment "An error correction data transformation is a data transformation that has the objective of error correction, where the aim is to remove (correct for) erroneous contributions from the input to the data transformation."@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "repeated measure design"@en ; rdfs:comment "a study design which use the same individuals and exposure them to a set of conditions. The effect of order and practice can be confounding factor in such designs"@en ; rdfs:subClassOf . nmrcv:NMR:1400241 a rdfs:Class ; rdfs:label "AC instrument" ; rdfs:subClassOf nmrcv:NMR:1400198 . nmrcv:NMR:1400190 a rdfs:Class ; rdfs:label "UltraShield Plus" ; rdfs:subClassOf nmrcv:NMR:1400186 . a rdfs:Class ; rdfs:label "flux balance analysis"@en ; rdfs:comment "Flux balance analysis is a mathematical approach for analyzing the flow of metabolites through a metabolic network. Flux balance analysis calculates the flow of metabolites through a metabolic network, thereby making it possible to predict the growth rate of an organism or the rate of production of a biotechnologically important metabolite." ; rdfs:subClassOf . nmrcv:NMR:1000547 a rdfs:Class ; rdfs:label "object attribute" ; rdfs:comment "Object Attribute." ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "lethal dose"@en ; rdfs:comment "a \"lethal dose\" represents a dose (usually recorded as dose per kilogram of subject body weight) at which a given percentage of subjects will die."@en ; rdfs:subClassOf . nmrcv:NMR:1001267 a rdfs:Class ; rdfs:label "software vendor" ; rdfs:subClassOf nmrcv:NMR:1400254 . a rdfs:Class ; rdfs:label "cartesian spatial coordinate datum"@en ; rdfs:comment "A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude"@en ; rdfs:subClassOf . nmrcv:NMR:1000147 a rdfs:Class ; rdfs:label "measured area based concentration"@en ; rdfs:subClassOf nmrcv:NMR:1000137 . a rdfs:Class ; rdfs:label "lethal dose 50"@en ; rdfs:comment "the \"lethal dose 50\" represents a dose (usually recorded as dose per kilogram of subject body weight) at which 50% of subjects will die."@en ; rdfs:subClassOf . nmrcv:NMR:1000863 a rdfs:Class ; rdfs:label "predicted isoelectric point" ; rdfs:comment "The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm." ; rdfs:subClassOf nmrcv:NMR:1000861 . a rdfs:Class ; rdfs:label "Viruses" ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "data item"@en ; rdfs:comment "a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en ; rdfs:subClassOf . nmrcv:NMR:1000362 a rdfs:Class ; rdfs:label "bucket resetting"@en ; rdfs:comment "put in as reqired by NMRProcFlow tool" ; rdfs:subClassOf nmrcv:NMR:1400138 . nmrcv:NMR:1000013 a rdfs:Class ; rdfs:label "1D spectrum coordinate system descriptor"@en ; rdfs:subClassOf nmrcv:NMR:1000172 . a rdfs:Class ; rdfs:label "sumoflux"@en ; rdfs:comment """a software produced by Nicolas Zamboni and colleagues for flux ratio estimation based on a 5 step workflow known as SUMOFLUX and which relies on surrogate modeling. Matlab code available from: http://www.imsb.ethz.ch/research/zamboni/resources.html"""@en ; rdfs:subClassOf . nmrcv:NMR:1000414 a rdfs:Class ; rdfs:label "Wiswesser Line Notation"@en ; rdfs:subClassOf nmrcv:NMR:1000418 . a rdfs:Class ; rdfs:label "fiat object part"@en ; rdfs:subClassOf . a rdfs:Class ; rdfs:label "chemical reaction"@en ; rdfs:comment "a process which uses or consumes chemical/molecular entities to generate other molecular entities"@en ; rdfs:subClassOf . nmrcv:NMR:1000063 a rdfs:Class ; rdfs:label "triphenylphosphine oxide"@en ; rdfs:subClassOf nmrcv:NMR:1000058 . nmrcv:NMR:1000368 a rdfs:Class ; rdfs:label "JNM-ECX Series FT NMR instrument"@en ; rdfs:subClassOf nmrcv:NMR:1400226 . a rdfs:Class ; rdfs:label "document"@en ; rdfs:comment "A collection of information content entities intended to be understood together as a whole"@en ; rdfs:subClassOf . nmrcv:NMR:1400239 a rdfs:Class ; rdfs:label "Varian GEMINI" ; rdfs:subClassOf nmrcv:NMR:1400234 . nmrcv:NMR:1000038 a rdfs:Class ; rdfs:label "ammonium bromide"@en ; rdfs:subClassOf nmrcv:NMR:1000036 . a rdf:Property ; rdfs:label "BFO OWL specification label"@en ; rdfs:comment "Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification."@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "BFO CLIF specification label"@en ; rdfs:comment "Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "editor preferred label" ; rdfs:comment "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "example of usage"@en ; rdfs:comment "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "has curation status"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "textual definition" ; rdfs:comment "The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "editor note"@en ; rdfs:comment "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "term editor"@en ; rdfs:comment "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "alternative term"@en ; rdfs:comment "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "definition source"@en ; rdfs:comment "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "curator note"@en ; rdfs:comment "An administrative note of use for a curator but of no use for a user"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "imported from"@en ; rdfs:comment "For external terms/classes, the ontology from which the term was imported"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "is quality measured as"@en ; rdfs:comment "inverse of the relation of is quality measurement of"@en ; rdfs:range . a rdf:Property ; rdfs:label "elucidation"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "has associated axiom(nl)"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "has associated axiom(fol)"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "has axiom label"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "is isotopomer of"@en ; rdfs:comment "a chemical entity is said to be an isotopomer of another one if it has the same number of each isotopic atom but differs in their positions. isotopomer is a contraction of isotopic isomer"@en ; rdfs:range . a rdf:Property ; rdfs:label "is isotopologue of" ; rdfs:comment "a molecular entity which differs only in isotopic composition (i.e the number of isotopic substitution differs but the overall chemical structure is unchanged) is said to be an isotologue"@en ; rdfs:range . a rdf:Property ; rdfs:label "ISA alternative term"@en ; rdfs:comment "An alternative term used by the ISA tools project (http://isa-tools.org)." ; rdfs:range xsd:string ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "IEDB alternative term" ; rdfs:comment "An alternative term used by the IEDB." ; rdfs:range xsd:string ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "bearer of"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en ; rdfs:range . a rdf:Property ; rdfs:label "quality of"@en ; rdfs:comment "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "role of"@en ; rdfs:comment "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en ; rdfs:range xsd:string ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "has quality"@en ; rdfs:comment "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en ; rdfs:range ; rdfs:subPropertyOf . a rdf:Property ; rdfs:label "derives into"@en ; rdfs:comment "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ; rdfs:range . a rdf:Property ; rdfs:label "temporal interpretation"@en ; rdfs:range xsd:string . a rdf:Property ; rdfs:label "temporal relation"@en ; rdfs:comment "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." ; rdfs:range . a rdf:Property ; rdfs:range . a rdf:Property ; rdfs:range . a rdf:Property ; rdfs:range . a rdf:Property ; rdfs:range . a rdf:Property ; rdfs:range . a rdf:Property ; rdfs:range . a rdfs:Datatype . a rdfs:Class ; rdfs:label "curation status specification"@en ; rdfs:comment "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ; rdfs:subClassOf . a ; rdfs:label "example to be eventually removed"@en . a ; rdfs:label "metadata complete"@en ; rdfs:comment "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en . a ; rdfs:label "organizational term"@en ; rdfs:comment "term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en . a ; rdfs:label "ready for release"@en ; rdfs:comment "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en . a ; rdfs:label "metadata incomplete"@en ; rdfs:comment "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en . a ; rdfs:label "uncurated"@en ; rdfs:comment "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en . a ; rdfs:label "pending final vetting"@en ; rdfs:comment "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en . a ; rdfs:label "to be replaced with external ontology term"@en ; rdfs:comment "Terms with this status should eventually replaced with a term from another ontology."@en . a ; rdfs:label "requires discussion"@en ; rdfs:comment "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en . a rdfs:Class ; rdfs:label "material separation objective" ; rdfs:comment "is an objective to transform a material entity into spatially separated components." ; rdfs:subClassOf . a ; rdfs:label "portioning objective" ; rdfs:comment "A material separation objective aiming to separate material into multiple portions, each of which contains a similar composition of the input material." . a ; rdfs:label "separation into different composition objective" ; rdfs:comment "A material separation objective aiming to separate a material entity that has parts of different types, and end with at least one output that is a material with parts of fewer types (modulo impurities)." .