PREFIX GHGA:
PREFIX rdf:
PREFIX rdfs:
PREFIX xsd:
GHGA:IdentifiedByAliasMixin a rdfs:Class ;
rdfs:subClassOf GHGA:AliasMixin .
GHGA:Experiment a rdfs:Class ;
rdfs:comment "An Experiment is an investigation that consists of a coordinated set of actions and observations designed to generate data with the goal of verifying, falsifying, or establishing the validity of a hypothesis." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin , GHGA:AttributeMixin .
GHGA:description a rdf:Property ;
rdfs:comment "A detailed description of this Experiment." , "A short description for this Data Access Policy." , "A short description of this Experiment Method." , "A description summarizing how this Analysis was carried out (e.g., description of computational tools, pipelines, workflows)." , "A detailed description (abstract) that describes the goals of this Study." , "A description summarizing this Dataset." , "A concise description about the Sample source, the collection method, and the protocol which was followed to process this Sample." , "Description of an entity." ;
rdfs:range xsd:string .
GHGA:attributes a rdf:Property ;
rdfs:comment "Key/value pairs corresponding to an entity." ;
rdfs:range GHGA:Attribute .
GHGA:ega_accession a rdf:Property ;
rdfs:comment "The EGA accession of the 'Run' entity (EGAR)." , "The EGA accession ID of an entity." , "The EGA accession of the 'Experiment' entity (EGAX)." , "The EGA accession of the 'Analysis' entity (EGAZ)." ;
rdfs:range xsd:string .
GHGA:experiment_method a rdf:Property ;
rdfs:comment "The alias of the Experiment Method that is associated with this Experiment." , "The Experiment Method associated with an entity." ;
rdfs:range GHGA:ExperimentMethod .
GHGA:sample a rdf:Property ;
rdfs:comment "The alias of one or more Samples that are associated with this Experiment." ;
rdfs:range GHGA:Sample .
GHGA:title a rdf:Property ;
rdfs:comment "The title for this Experiment (e.g., GHGAE_PBMC_RNAseq)." , "The title that describes an entity." , "A comprehensive title for this Study." , "A title for this Dataset." , "The title for this Publication." ;
rdfs:range xsd:string .
GHGA:type a rdf:Property ;
rdfs:comment "The type of this Experiment." , "The type associated with this Experiment Method." , "The type of this Analysis." , "The type of the Sample." , "The type of an entity. Note: Not to be confused with rdf:type." ;
rdfs:range xsd:string , GHGA:SampleTypeEnum .
GHGA:DataAccessPolicy a rdfs:Class ;
rdfs:comment "A Data Access Policy specifies under which circumstances, legal or otherwise, a user can have access to one or more Datasets belonging to one or more Studies." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:policy_text a rdf:Property ;
rdfs:comment "The complete text for the Data Access Policy." ;
rdfs:range xsd:string .
GHGA:name a rdf:Property ;
rdfs:comment "A name for this Data Access Policy." , "The given filename." , "A short name identifying this Experiment Method." , "A descriptive name of this Sample (e.g., GHGAS_Blood_Sample1 or GHGAS_PBMC_RNAseq_S1). This property must not include any personally identifiable data." , "A name identifying this Analysis Method." ;
rdfs:range xsd:string .
GHGA:policy_url a rdf:Property ;
rdfs:comment "An alternative to the Data Access Policy text is to provide the URL for the policy. This is useful if the terms of the policy are available online at a resolvable URL." ;
rdfs:range xsd:string .
GHGA:data_access_committee a rdf:Property ;
rdfs:comment "The Data Access Committee linked to this Data Use Policy." ;
rdfs:range GHGA:DataAccessCommittee .
GHGA:data_use_permission_term a rdf:Property ;
rdfs:comment "The Data Use Permission associated with this Data Use Policy. The used term should be a descendant of 'DUO:0000001: data use permission' (e.g., no restriction)." ;
rdfs:range GHGA:DataUsePermissionEnum .
GHGA:data_use_modifier_ids a rdf:Property ;
rdfs:comment "The DUO IDs corresponding to the Data Use Modifier terms (e.g., DUO:0000043)." ;
rdfs:range xsd:string .
GHGA:data_use_permission_id a rdf:Property ;
rdfs:comment "The DUO ID corresponding to the Data Use Permission term (e.g., DUO:0000004)." ;
rdfs:range xsd:string .
GHGA:data_use_modifier_terms a rdf:Property ;
rdfs:comment "One or more Data Use Modifiers for the Data Use Permission associated with this Data Use Policy. The used terms should be descendants of 'DUO:0000017: data use modifier' (e.g., clinical care use). Please use 'USER_SPECIFIC_RESTRICTION' if no other modifier applies." ;
rdfs:range GHGA:DataUseModifierEnum .
GHGA:AliasMixin a rdfs:Class ;
rdfs:comment "Mixin for entities that can be assigned an alias at the time of metadata submission." .
GHGA:alias a rdf:Property ;
rdfs:comment "The alias for an entity at the time of submission." ;
rdfs:range xsd:string .
GHGA:Individual a rdfs:Class ;
rdfs:comment "An Individual is a Person who is participating in a Study." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:phenotypic_features_terms a rdf:Property ;
rdfs:comment "The phenotypic feature concepts that the entity is associated with at the time of retrieval from the organism. The Phenotypic Feature is captured using a concept from the Human Phenotype Ontology (e.g., Lymph node hypoplasia, Cough, Hypotension)." ;
rdfs:range xsd:string .
GHGA:geographical_region_id a rdf:Property ;
rdfs:comment "The corresponding ID to the NCIT vocabulary (e.g., NCIT:C16312, NCIT:C16636, NCIT:C16761)." ;
rdfs:range xsd:string .
GHGA:ancestry_ids a rdf:Property ;
rdfs:comment "The corresponding ID to the HANCESTRO vocabulary (e.g., HANCESTRO:0010, HANCESTRO:0005, HANCESTRO:0017)." ;
rdfs:range xsd:string .
GHGA:diagnosis_ids a rdf:Property ;
rdfs:comment "One or more diagnoses that the entity is associated with at the time of retrieval from the organism. The diagnosis is captured using a code from ICD-10 (WHO version). Please restrict the ICD code to the chapter letter and two digits for the main diagnosis (e.g., E10, C01)." ;
rdfs:range xsd:string .
GHGA:sex a rdf:Property ;
rdfs:comment "The biological sex of the Individual (e.g., female)." ;
rdfs:range GHGA:IndividualSexEnum .
GHGA:ancestry_terms a rdf:Property ;
rdfs:comment "A person's descent or lineage from a population. The used terms should be descendants of 'HANCESTRO:0004: ancestry category' (e.g., African, European, Oceanian)." ;
rdfs:range xsd:string .
GHGA:phenotypic_features_ids a rdf:Property ;
rdfs:comment "The corresponding ID to the HPO vocabulary (e.g., HP:0002732, HP:0012735, HP:0002615)." ;
rdfs:range xsd:string .
GHGA:geographical_region_term a rdf:Property ;
rdfs:comment "The Individual's geographical region. The used terms should be descendants of 'NCIT:C25464: country' (e.g., Austria, Germany, Italy)." ;
rdfs:range xsd:string .
GHGA:diagnosis_terms a rdf:Property ;
rdfs:comment "The ICD-10 terms corresponding to the ICD-10 codes (e.g., Type 1 diabetes mellitus, Malignant neoplasm of base of tongue)." ;
rdfs:range xsd:string .
GHGA:ExperimentMethodSupportingFile a rdfs:Class ;
rdfs:comment "An Experiment Method Supporting File is a File that contains additional information relevant for the Experiment Method, such as (unstructured) protocols." ;
rdfs:subClassOf GHGA:File .
GHGA:format a rdf:Property ;
rdfs:comment "The file format of the Supporting File (e.g., TXT, JSON)." , "The file format of the Research Data File (e.g., FASTQ, uBAM, FASTA)." , "The file format of the Process Data File (e.g., CRAM, BAM)." ;
rdfs:range GHGA:SupportingFileFormatEnum , GHGA:ResearchDataFileFormatEnum , GHGA:ProcessDataFileFormatEnum .
GHGA:included_in_submission a rdf:Property ;
rdfs:comment "Whether a File is included in the Submission or not." ;
rdfs:range xsd:boolean .
GHGA:dataset a rdf:Property ;
rdfs:comment "The Dataset alias associated with this File." ;
rdfs:range GHGA:Dataset .
GHGA:ResearchDataFile a rdfs:Class ;
rdfs:comment "A Research Data File is a File that contains raw data originating from an Experiment." ;
rdfs:subClassOf GHGA:File .
GHGA:experiments a rdf:Property ;
rdfs:comment "The aliases of the Experiments that produced this Research Data File." , "One or more Experiment entities associated with this Submission." ;
rdfs:range GHGA:Experiment .
GHGA:sequencing_lane_id a rdf:Property ;
rdfs:comment "The identifier of a sequencing lane." ;
rdfs:range xsd:string .
GHGA:technical_replicate a rdf:Property ;
rdfs:comment "An integer to indicate the technical replicate of this File." ;
rdfs:range xsd:integer .
GHGA:IndividualSupportingFile a rdfs:Class ;
rdfs:comment "An Individual Supporting File is a File that contains additional information relevant for the Individual, such as ped-files, phenopackets or imaging data." ;
rdfs:subClassOf GHGA:File .
GHGA:individual a rdf:Property ;
rdfs:comment "The Individual associated with an entity." , "The alias of the Individual entity from which this Biospecimen or Sample was derived." ;
rdfs:range GHGA:Individual .
GHGA:AnalysisMethodSupportingFile a rdfs:Class ;
rdfs:comment "An Analysis Method Supporting File is a File that contains additional information relevant for the Analysis Method, such as (unstructured) protocols or task descriptions." ;
rdfs:subClassOf GHGA:File .
GHGA:analysis_method a rdf:Property ;
rdfs:comment "The Analysis Process associated with an entity." , "The alias of the Analysis Method that is associated with this Analysis." ;
rdfs:range GHGA:AnalysisMethod .
GHGA:ProcessDataFile a rdfs:Class ;
rdfs:comment "A Process Data File is a File that contains data produced by an Analysis or workflow." ;
rdfs:subClassOf GHGA:File .
GHGA:analysis a rdf:Property ;
rdfs:comment "The alias of the Analysis that produced this Process Data File." ;
rdfs:range GHGA:Analysis .
GHGA:ExperimentMethod a rdfs:Class ;
rdfs:comment "The Experiment Method captures technical metadata describing the parameters used to generate output from the Sample." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin , GHGA:AttributeMixin .
GHGA:target_coverage a rdf:Property ;
rdfs:comment "Mean coverage for whole genome sequencing, or mean target coverage for whole exome and targeted sequencing, (i.e. the number of times a particular locus was sequenced)." ;
rdfs:range xsd:string .
GHGA:library_type a rdf:Property ;
rdfs:comment "Describe the level of omics analysis (e.g., WGS, ATAC)." ;
rdfs:range GHGA:LibraryPreparationLibraryTypeEnum .
GHGA:rnaseq_strandedness a rdf:Property ;
rdfs:comment "The strandedness of the library, whether reads come from both strands of the cDNA or only from the first (antisense) or the second (sense) strand." ;
rdfs:range GHGA:LibraryPreparationRnaSeqStrandednessEnum .
GHGA:flow_cell_type a rdf:Property ;
rdfs:comment "Type of flow cell used (e.g., S4, S2 for NovaSeq; PromethION, Flongle for Nanopore)." ;
rdfs:range GHGA:FlowCellTypeEnum .
GHGA:sequencing_layout a rdf:Property ;
rdfs:comment "Describe whether the library was sequenced in single-end (forward or reverse) or paired-end mode." ;
rdfs:range GHGA:SequencingProtocolSequencingLayoutEnum .
GHGA:sequencing_center a rdf:Property ;
rdfs:comment "Center where sample was sequenced." ;
rdfs:range xsd:string .
GHGA:end_bias a rdf:Property ;
rdfs:comment "The end of the cDNA molecule that is preferentially sequenced (e.g., 3/5 prime end, full-length)." ;
rdfs:range GHGA:EndBiasEnum .
GHGA:library_preparation a rdf:Property ;
rdfs:comment "The general method for preparation of the sequencing library (e.g., KAPA PCR-free)." ;
rdfs:range xsd:string .
GHGA:library_preparation_kit_retail_name a rdf:Property ;
rdfs:comment "The retail name for the kit used to construct a genomic library. This may include the vendor name, kit name and kit version (e.g., Agilent sure select Human Exome V8, Twist RefSeq Exome)." ;
rdfs:range GHGA:LibraryPreparationKitRetailNameEnum .
GHGA:flow_cell_id a rdf:Property ;
rdfs:comment "Flow cell ID (e.g., Experiment ID_Cell 1_Lane_1)." ;
rdfs:range xsd:string .
GHGA:library_preparation_kit_manufacturer a rdf:Property ;
rdfs:comment "The manufacturer of the kit used for library preparation." ;
rdfs:range xsd:string .
GHGA:sequencing_read_length a rdf:Property ;
rdfs:comment "Length of sequencing reads (e.g., long or short or actual number of the read length)." ;
rdfs:range xsd:string .
GHGA:primer a rdf:Property ;
rdfs:comment "The type of primer used for reverse transcription (e.g., oligo-dT or random)." ;
rdfs:range GHGA:PrimerEnum .
GHGA:library_selection_methods a rdf:Property ;
rdfs:comment "One or more methods used to select for or against, enrich, or screen the material being sequenced (e.g., random, PCA, cDNA)." ;
rdfs:range GHGA:LibraryPreparationLibrarySelectionEnum .
GHGA:instrument_model a rdf:Property ;
rdfs:comment "The name and model of the technology platform used to perform sequencing." ;
rdfs:range GHGA:InstrumentModelEnum .
GHGA:target_regions a rdf:Property ;
rdfs:comment "Subset of genes or specific regions of the genome, which are most likely to be involved in the phenotype under study." ;
rdfs:range xsd:string .
GHGA:sample_barcode_read a rdf:Property ;
rdfs:comment "The type of read that contains the sample barcode (e.g., index1, index2, read1, read2)." ;
rdfs:range GHGA:SampleBarcodeReadEnum .
GHGA:Analysis a rdfs:Class ;
rdfs:comment "An Analysis is a data transformation that transforms input data to output data." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:research_data_files a rdf:Property ;
rdfs:comment "One or more aliases of the Research Data Files that this Analysis used as input to create Process Data Files." , "One or more Research Data Files associated with this Submission." ;
rdfs:range GHGA:ResearchDataFile .
GHGA:Study a rdfs:Class ;
rdfs:comment "A Study is an experimental investigation of a particular phenomenon. It involves a detailed examination and analysis of a subject to learn more about the phenomenon being studied." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin , GHGA:AttributeMixin .
GHGA:affiliations a rdf:Property ;
rdfs:comment "The affiliations associated with this Study." ;
rdfs:range xsd:string .
GHGA:types a rdf:Property ;
rdfs:comment "One or more types of this Study (e.g., Cancer Genomics, Epigenetics, Exome Sequencing)." , "The type of this Dataset." ;
rdfs:range GHGA:StudyTypeEnum , xsd:string .
GHGA:Dataset a rdfs:Class ;
rdfs:comment "A Dataset is a collection of Files that is prepared for distribution and is tied to a Data Access Policy." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:data_access_policy a rdf:Property ;
rdfs:comment "The Data Access Policy that applies to this Dataset." ;
rdfs:range GHGA:DataAccessPolicy .
GHGA:study a rdf:Property ;
rdfs:comment "The Study associated with this Dataset." , "The Study entity associated with this Publication." ;
rdfs:range GHGA:Study .
GHGA:Submission a rdfs:Class ;
rdfs:comment "A grouping entity that represents information about one or more entities. A submission can be considered as a set of inter-related (and inter-connected) entities that represent a data submission to GHGA." .
GHGA:data_access_committees a rdf:Property ;
rdfs:comment "The Data Access Committees that apply to the Data Access Policies in this Submission." ;
rdfs:range GHGA:DataAccessCommittee .
GHGA:studies a rdf:Property ;
rdfs:comment "Study entities associated with this Submission." ;
rdfs:range GHGA:Study .
GHGA:analyses a rdf:Property ;
rdfs:comment "One or more Analysis entities associated with this Submission." ;
rdfs:range GHGA:Analysis .
GHGA:publications a rdf:Property ;
rdfs:comment "One or more Publication entities associated with this Submission." ;
rdfs:range GHGA:Publication .
GHGA:analysis_methods a rdf:Property ;
rdfs:comment "The Analysis Methods that are part of this Submission." ;
rdfs:range GHGA:AnalysisMethod .
GHGA:experiment_methods a rdf:Property ;
rdfs:comment "The Experiment Methods that are part of this Submission." ;
rdfs:range GHGA:ExperimentMethod .
GHGA:data_access_policies a rdf:Property ;
rdfs:comment "The Data Access Policies that apply to the Datasets in this Submission." ;
rdfs:range GHGA:DataAccessPolicy .
GHGA:process_data_files a rdf:Property ;
rdfs:comment "One or more Process Data Files associated with this Submission." ;
rdfs:range GHGA:ProcessDataFile .
GHGA:samples a rdf:Property ;
rdfs:comment "One or more Sample entities associated with this Submission." ;
rdfs:range GHGA:Sample .
GHGA:analysis_method_supporting_files a rdf:Property ;
rdfs:comment "One or more Analysis Method Supporting Files associated with this Submission." ;
rdfs:range GHGA:AnalysisMethodSupportingFile .
GHGA:datasets a rdf:Property ;
rdfs:comment "One or more Dataset entities that are part of this Submission." ;
rdfs:range GHGA:Dataset .
GHGA:individuals a rdf:Property ;
rdfs:comment "One or more Individual entities associated with this Submission." ;
rdfs:range GHGA:Individual .
GHGA:individual_supporting_files a rdf:Property ;
rdfs:comment "One or more Individual Supporting Files associated with this Submission." ;
rdfs:range GHGA:IndividualSupportingFile .
GHGA:experiment_method_supporting_files a rdf:Property ;
rdfs:comment "One or more Experiment Method Supporting Files associated with this Submission." ;
rdfs:range GHGA:ExperimentMethodSupportingFile .
GHGA:Publication a rdfs:Class ;
rdfs:comment "A Publication represents an article that is published. The minimum expectation is that the publication has a valid DOI." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:author a rdf:Property ;
rdfs:comment "Author(s) of this Publication." ;
rdfs:range xsd:string .
GHGA:journal a rdf:Property ;
rdfs:comment "The name of the journal." ;
rdfs:range xsd:string .
GHGA:abstract a rdf:Property ;
rdfs:comment "The study abstract that describes the goals. Can also hold abstract from a publication related to this Study." ;
rdfs:range xsd:string .
GHGA:year a rdf:Property ;
rdfs:comment "The year in which the paper was published." ;
rdfs:range xsd:integer .
GHGA:doi a rdf:Property ;
rdfs:comment "DOI identifier of a publication." ;
rdfs:range xsd:string .
GHGA:xref a rdf:Property ;
rdfs:comment "One or more cross-references for this Publication." , "One or more cross-references for this Sample (e.g., this Sample may have an EBI BioSamples accession ID)." ;
rdfs:range xsd:string .
GHGA:File a rdfs:Class ;
rdfs:comment "A file is an object that contains information generated from a process, either an Experiment or an Analysis." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:Sample a rdfs:Class ;
rdfs:comment "A Sample is a limited quantity of something to be used for testing, analysis, inspection, investigation, demonstration, or trial use. It is prepared from a Biospecimen." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin , GHGA:AttributeMixin .
GHGA:biospecimen_tissue_id a rdf:Property ;
rdfs:comment "The corresponding ontology ID for the biospecimen_tissue_term (e.g., BTO:0000671, BTO:0000089, BTO:0000848)." ;
rdfs:range xsd:string .
GHGA:biospecimen_vital_status_at_sampling a rdf:Property ;
rdfs:comment "Vital Status of the Individual at the time of isolating this biospecimen (e.g., alive)." ;
rdfs:range GHGA:VitalStatusEnum .
GHGA:biospecimen_type a rdf:Property ;
rdfs:comment "The type of Biospecimen." ;
rdfs:range xsd:string .
GHGA:disease_or_healthy a rdf:Property ;
rdfs:comment "Whether a Condition corresponds to a disease or a healthy state." ;
rdfs:range GHGA:DiseaseOrHealthyEnum .
GHGA:biospecimen_isolation a rdf:Property ;
rdfs:comment "Method or device employed for collecting/isolating this Biospecimen." ;
rdfs:range GHGA:IsolationEnum .
GHGA:biological_replicate a rdf:Property ;
rdfs:comment "An integer to indicate the number of a biological replicate." ;
rdfs:range xsd:integer .
GHGA:biospecimen_name a rdf:Property ;
rdfs:comment "A descriptive name of this Biospecimen (e.g., GHGAB_caudate_nucleus_biospecimen). This property must not include any personally identifiable data." ;
rdfs:range xsd:string .
GHGA:biospecimen_description a rdf:Property ;
rdfs:comment "A concise description about the Biospecimen source, the collection method, and the protocol which was followed to process this Biospecimen." ;
rdfs:range xsd:string .
GHGA:biospecimen_tissue_term a rdf:Property ;
rdfs:comment "The tissue this Biospecimen originated from. Should be a term from the BRENDA Tissue Ontology vocabulary (e.g., kidney, blood, melanoma cell)." ;
rdfs:range xsd:string .
GHGA:biospecimen_age_at_sampling a rdf:Property ;
rdfs:comment "The age of the Individual at the time of isolating this biospecimen." ;
rdfs:range GHGA:AgeRangeEnum .
GHGA:biospecimen_storage a rdf:Property ;
rdfs:comment "Methods by which this Biospecimen is stored." ;
rdfs:range GHGA:StorageEnum .
GHGA:storage a rdf:Property ;
rdfs:comment "Methods by which a Sample is stored." ;
rdfs:range GHGA:StorageEnum .
GHGA:case_control_status a rdf:Property ;
rdfs:comment "Whether a Condition corresponds to a treatment or a control." ;
rdfs:range GHGA:CaseControlStatusEnum .
GHGA:AnalysisMethod a rdfs:Class ;
rdfs:comment "An Analysis Method captures the workflow steps that were performed to analyze data obtained from an Experiment." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin , GHGA:AttributeMixin .
GHGA:software_versions a rdf:Property ;
rdfs:comment "key/value pairs where key corresponds to a software name and value corresponds to a version descriptor (e.g., `salmon` = '1.3.0', `trim-galore` = '0.6.6', `bedtools` = '2.29.2')." ;
rdfs:range GHGA:Attribute .
GHGA:reference_source a rdf:Property ;
rdfs:comment "Source or provider of the reference, e.g., \"UCSC\", \"Ensembl\"" ;
rdfs:range xsd:string .
GHGA:reference_link a rdf:Property ;
rdfs:comment "URL to the reference" ;
rdfs:range xsd:string .
GHGA:reference_type a rdf:Property ;
rdfs:comment "Type of reference data used" ;
rdfs:range GHGA:ReferenceTypeEnum .
GHGA:workflow_version a rdf:Property ;
rdfs:comment "The workflow version." ;
rdfs:range xsd:string .
GHGA:workflow_repository a rdf:Property ;
rdfs:comment "The workflow repository (e.g., the URL)." ;
rdfs:range xsd:string .
GHGA:workflow_tasks a rdf:Property ;
rdfs:comment "Tasks performed by the workflow" ;
rdfs:range xsd:string .
GHGA:reference_version a rdf:Property ;
rdfs:comment "Version or release identifier of the reference data" ;
rdfs:range xsd:string .
GHGA:workflow_name a rdf:Property ;
rdfs:comment "The workflow name." ;
rdfs:range xsd:string .
GHGA:reference_name a rdf:Property ;
rdfs:comment "Name or identifier of the reference, e.g., \"hg38\", \"dbSNP\"" ;
rdfs:range xsd:string .
GHGA:parameters a rdf:Property ;
rdfs:comment "Key/value pairs where key corresponds to a parameter name and value corresponds to a parameter value (e.g., 'aligner' = 'star_salmon', 'hisat2_build_memory' = '200.GB', 'split_fastq' = 50000000)." ;
rdfs:range GHGA:Attribute .
GHGA:workflow_doi a rdf:Property ;
rdfs:comment "A digital object identifier for the workflow. Can be a publication or the workflow commit that was used for the Analysis." ;
rdfs:range xsd:string .
GHGA:DataAccessCommittee a rdfs:Class ;
rdfs:comment "A group of members that are delegated to grant access to one or more datasets after ensuring the criteria for data sharing has been met, and request for data use does not raise ethical and/or legal concerns." ;
rdfs:subClassOf GHGA:IdentifiedByAliasMixin .
GHGA:email a rdf:Property ;
rdfs:comment "The email of the Data Access Committee (e.g., DAC[at]email.com). This property must not include any personally identifiable data." ;
rdfs:range xsd:string .
GHGA:institute a rdf:Property ;
rdfs:comment "The Institute a person is affiliated with." ;
rdfs:range xsd:string .
GHGA:AttributeMixin a rdfs:Class ;
rdfs:comment "Mixin for entities that can have one or more attributes." .
GHGA:Attribute a rdfs:Class ;
rdfs:comment "A key/value pair that further characterizes an entity." .
GHGA:key a rdf:Property ;
rdfs:comment "The key of an attribute." ;
rdfs:range xsd:string .
GHGA:key_type a rdf:Property ;
rdfs:comment "A semantic type that characterizes the attribute key (e.g., oxygen saturation measurement (MAXO:0000616))." ;
rdfs:range xsd:string .
GHGA:value a rdf:Property ;
rdfs:comment "The value for an attribute (e.g., a numerical value without the units)." ;
rdfs:range xsd:string .
GHGA:value_type a rdf:Property ;
rdfs:comment "The value_type that characterizes the attribute value (e.g., percentage (SIO:001413))." ;
rdfs:range xsd:string .
GHGA:library_name a rdf:Property ;
rdfs:comment "A short name identifying the library. The same name may refer to multiple versions of the same continually updated library." ;
rdfs:range xsd:string .
GHGA:SampleBarcodeReadEnum a rdfs:Class ;
rdfs:comment "Permitted values for sample barcode read." .
GHGA:SampleBarcodeReadEnum.INDEX_1 a GHGA:SampleBarcodeReadEnum ;
rdfs:comment "Sample barcode read location is in Index 1." .
GHGA:SampleBarcodeReadEnum.INDEX_1_AND_INDEX_2 a GHGA:SampleBarcodeReadEnum ;
rdfs:comment "Sample barcode read location is in Index 1 and Index 2." .
GHGA:SampleBarcodeReadEnum.OTHER a GHGA:SampleBarcodeReadEnum ;
rdfs:comment "Sample barcode read is neither in Index 1 or Index 1 and Index 2." .
GHGA:ResearchDataFileFormatEnum a rdfs:Class ;
rdfs:comment "Enum to capture Research Data File formats." .
GHGA:ResearchDataFileFormatEnum.FASTA a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "FASTA format including NCBI-style IDs." .
GHGA:ResearchDataFileFormatEnum.FASTQ a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "FASTQ short read format ignoring quality scores." .
GHGA:ResearchDataFileFormatEnum.UBAM a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "Unaligned BAM file." .
GHGA:ResearchDataFileFormatEnum.UCRAM a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "Unaligned CRAM file." .
GHGA:ResearchDataFileFormatEnum.FAST_5 a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "FAST5 data format for Nanopore data." .
GHGA:ResearchDataFileFormatEnum.POD_5 a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "POD5 file format for Nanopore data." .
GHGA:ResearchDataFileFormatEnum.RAW a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "Raw file format for mass spectrometry proteomics data." .
GHGA:ResearchDataFileFormatEnum.D a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "Raw .d files for mass spectrometry proteomics data." .
GHGA:ResearchDataFileFormatEnum.MZML a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "mzML format for mass spectrometry proteomics data." .
GHGA:ResearchDataFileFormatEnum.MZDATA a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "mzData for mass spectrometry proteomics data." .
GHGA:ResearchDataFileFormatEnum.IDAT a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "IDAT file format for BeadArray data." .
GHGA:ResearchDataFileFormatEnum.CEL a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "CEL file format for Affymetrix data." .
GHGA:ResearchDataFileFormatEnum.OTHER a GHGA:ResearchDataFileFormatEnum ;
rdfs:comment "A file format not captured by the controlled vocabulary." .
GHGA:VitalStatusEnum a rdfs:Class ;
rdfs:comment "Enum to capture the vital status of an individual." .
GHGA:VitalStatusEnum.ALIVE a GHGA:VitalStatusEnum ;
rdfs:comment "Showing characteristics of life; displaying signs of life." .
GHGA:VitalStatusEnum.DECEASED a GHGA:VitalStatusEnum ;
rdfs:comment "The cessation of life." .
GHGA:VitalStatusEnum.UNKNOWN a GHGA:VitalStatusEnum ;
rdfs:comment "Vital status is unknown." .
GHGA:LibraryPreparationLibrarySelectionEnum a rdfs:Class ;
rdfs:comment "Permitted vocabulary for library selections." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Selection of methylated DNA fragments using an antibody raised against 5-methylcytosine or 5-methylcytidine (m5C)." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Cap-analysis gene expression." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "PolyA selection or enrichment for messenger RNA (mRNA). complementary DNA." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Cot-filtered highly repetitive genomic DNA." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Cot-filtered moderately repetitive genomic DNA." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Cot-filtered single/low-copy genomic DNA." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Cot-filtered theoretical single-copy genomic DNA." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Chromatin immunoprecipitation." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Deoxyribonuclease (MNase) digestion." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Hypo-methylated partial restriction digest." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Selection by hybridization in array or solution." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Enrichment by methyl-CpG binding domain." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Methyl Filtrated" .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Micrococcal Nuclease (MNase) digestion." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Methylation Spanning Linking Library." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Source material was selected by designed primers." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Rapid Amplification of cDNA Ends." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Source material was selected by randomly generated primers." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Random selection by shearing or other method." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Source material was selected by reverse transcription PCR." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Reproducible genomic subsets, often generated by restriction fragment size selection, containing a manageable number of loci to facilitate re-sampling." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "DNA fractionation using restriction enzymes." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Physical selection of size appropriate targets." .
GHGA:LibraryPreparationLibrarySelectionEnum.UNSPECIFIED a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "The library selection cannot be specified." .
a GHGA:LibraryPreparationLibrarySelectionEnum ;
rdfs:comment "Other library enrichment, screening, or selection process." .
GHGA:AncestryEnum a rdfs:Class ;
rdfs:comment "Permitted values for ancestry." .
GHGA:IndividualSexEnum a rdfs:Class ;
rdfs:comment "The sex of an Individual as as defined in a specific medical and clinical context." .
a GHGA:IndividualSexEnum ;
rdfs:comment "A sex for clinical use value in which stereotypically or statistically \"female\" values apply to an individual in a given medical context, such as for a procedure, process, algorithm, hormone level, genetic composition, organ inventory." .
a GHGA:IndividualSexEnum ;
rdfs:comment "A sex for clinical use value in which stereotypically or statistically \"male\" values apply to an individual in a given medical context, such as for a procedure, process, algorithm, hormone level, genetic composition, organ inventory." .
a GHGA:IndividualSexEnum ;
rdfs:comment "A sex for clinical use value in which the stereotypical or statistical known values do not apply, cannot be determined, or are not sufficient for determination of a another value." .
GHGA:IndividualSexEnum.OTHER a GHGA:IndividualSexEnum ;
rdfs:comment "A sex not captured by the controlled vocabulary." .
GHGA:LibraryPreparationLibraryTypeEnum a rdfs:Class ;
rdfs:comment "The type of the library." .
GHGA:LibraryPreparationLibraryTypeEnum.WGS a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "Whole genome sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.WXS a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "Whole exome sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.WCS a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "Whole chromosome sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.TOTAL_RNA a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "Total RNA sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.M_RNA a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "mRNA sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.MI_RNA a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "miRNA sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.NC_RNA a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "ncRNA sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.ATAC a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "ATAC sequencing library" .
GHGA:LibraryPreparationLibraryTypeEnum.METHYLATION a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "Methylation library" .
GHGA:LibraryPreparationLibraryTypeEnum.CHROMOSOME_CONFORMATION_CAPTURE a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "Chromosome conformation capture library" .
GHGA:LibraryPreparationLibraryTypeEnum.CHIP_SEQ a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "A combination of chromatin immunoprecipitation with DNA sequencing." .
GHGA:LibraryPreparationLibraryTypeEnum.OTHER a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "A library type not captured by the above vocabulary." .
GHGA:LibraryPreparationLibraryTypeEnum.UNSPECIFIED a GHGA:LibraryPreparationLibraryTypeEnum ;
rdfs:comment "The library type is not specified." .
GHGA:PhenotypicFeaturesEnum a rdfs:Class ;
rdfs:comment "An enum describing permissible phenotype descriptors." .
GHGA:DataUsePermissionEnum a rdfs:Class ;
rdfs:comment "Permitted values for data use permission." .
a GHGA:DataUsePermissionEnum ;
rdfs:comment "This data use permission indicates that use is allowed for general research use for any research purpose." .
a GHGA:DataUsePermissionEnum ;
rdfs:comment "This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry." .
a GHGA:DataUsePermissionEnum ;
rdfs:comment "This data use permission indicates that use is allowed provided it is related to the specified disease." .
a GHGA:DataUsePermissionEnum ;
rdfs:comment "This data use permission indicates there is no restriction on use." .
a GHGA:DataUsePermissionEnum ;
rdfs:comment "This data use permission indicates that use of the data is limited to the study of population origins or ancestry." .
GHGA:SupportingFileFormatEnum a rdfs:Class ;
rdfs:comment "Enum to capture Supporting File types." .
GHGA:SupportingFileFormatEnum.CSV a GHGA:SupportingFileFormatEnum ;
rdfs:comment "Tabular data represented as comma-separated values in a text file." .
GHGA:SupportingFileFormatEnum.JSON a GHGA:SupportingFileFormatEnum ;
rdfs:comment "JavaScript Object Notation format; a lightweight, text-based format to represent tree-structured data using key-value pairs." .
GHGA:SupportingFileFormatEnum.PED a GHGA:SupportingFileFormatEnum ;
rdfs:comment "The PED file describes individuals and genetic data and is used by the Plink package." .
GHGA:SupportingFileFormatEnum.TSV a GHGA:SupportingFileFormatEnum ;
rdfs:comment "Tabular data represented as tab-separated values in a text file." .
GHGA:SupportingFileFormatEnum.TXT a GHGA:SupportingFileFormatEnum ;
rdfs:comment "Textual format. Data in text format can be compressed into binary format, or can be a value of an XML element or attribute. Markup formats are not considered textual (or more precisely, not plain-textual)." .
GHGA:SupportingFileFormatEnum.YAML a GHGA:SupportingFileFormatEnum ;
rdfs:comment "YAML (YAML Ain't Markup Language) is a human-readable tree-structured data serialisation language." .
GHGA:SupportingFileFormatEnum.OTHER a GHGA:SupportingFileFormatEnum ;
rdfs:comment "A file format not captured by the controlled vocabulary." .
GHGA:ReferenceTypeEnum a rdfs:Class ;
rdfs:comment "Enum to capture reference data types" .
GHGA:ReferenceTypeEnum.GENOME a GHGA:ReferenceTypeEnum ;
rdfs:comment "Reference genome sequence" .
GHGA:ReferenceTypeEnum.SNP a GHGA:ReferenceTypeEnum ;
rdfs:comment "SNP reference database" .
GHGA:ReferenceTypeEnum.INDEL a GHGA:ReferenceTypeEnum ;
rdfs:comment "Indel reference set" .
GHGA:ReferenceTypeEnum.TRANSCRIPTOME a GHGA:ReferenceTypeEnum ;
rdfs:comment "Transcript sequences" .
GHGA:ReferenceTypeEnum.HAPLOTYPE a GHGA:ReferenceTypeEnum ;
rdfs:comment "Haplotype panels" .
GHGA:ReferenceTypeEnum.VCF a GHGA:ReferenceTypeEnum ;
rdfs:comment "Variant call format reference" .
GHGA:ReferenceTypeEnum.BED a GHGA:ReferenceTypeEnum ;
rdfs:comment "BED-formatted genomic regions" .
GHGA:ReferenceTypeEnum.REPEATMASKER a GHGA:ReferenceTypeEnum ;
rdfs:comment "RepeatMasker annotations" .
GHGA:ReferenceTypeEnum.OTHER a GHGA:ReferenceTypeEnum ;
rdfs:comment "Other types of references" .
GHGA:DataUseModifierEnum a rdfs:Class ;
rdfs:comment "Permitted values for data use modifier." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is allowed for clinical use and care. Clinical Care is defined as Health care or services provided at home, in a healthcare facility or hospital. Data may be used for clinical decision making." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that the requestor must return derived/enriched data to the database/resource." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is limited to use within an approved institution." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is limited to use within an approved project." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is limited to use by approved users." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is approved for a specific number of months. This should be coupled with an integer value indicating the number of months." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that requestor agrees not to publish results of studies until a specific date. This should be coupled with a date specified as ISO8601." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is limited to within a specific geographic region. This should be coupled with an ontology term describing the geographical location the restriction applies to." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s). This could be coupled with a string describing the primary study investigator(s)." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use of the data is limited to not-for-profit use. This indicates that data can be used by commercial organisations for research purposes, but not commercial purposes." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use of the data is limited to not-for-profit organizations." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is limited to genetic studies only (i.e., studies that include genotype research alone or both genotype and phenotype research, but not phenotype research exclusively)." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms)." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates that use is limited to studies of a certain research type." .
a GHGA:DataUseModifierEnum ;
rdfs:comment "This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited." .
GHGA:LibraryPreparationRnaSeqStrandednessEnum a rdfs:Class ;
rdfs:comment "Permitted values for library preparation RNASeq strandedness." .
a GHGA:LibraryPreparationRnaSeqStrandednessEnum ;
rdfs:comment "Having a DNA sequence identical to that of a messenger RNA molecule; the coding strand in double-stranded DNA." .
a GHGA:LibraryPreparationRnaSeqStrandednessEnum ;
rdfs:comment "Having a DNA sequence complementary to that of a messenger RNA molecule; the non-coding strand in double-stranded DNA." .
a GHGA:LibraryPreparationRnaSeqStrandednessEnum ;
rdfs:comment "Non-directional sequencing, where the reads can map from either the transcript strand or its complement." .
GHGA:ProcessDataFileFormatEnum a rdfs:Class ;
rdfs:comment "Enum to capture Process Data File formats." .
GHGA:ProcessDataFileFormatEnum.BAI a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "BAM indexing format." .
GHGA:ProcessDataFileFormatEnum.BAM a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g., sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data." .
GHGA:ProcessDataFileFormatEnum.BCF a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "BCF, the binary version of Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation)." .
GHGA:ProcessDataFileFormatEnum.BED a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "Browser Extensible Data (BED) format of sequence annotation track, typically to be displayed in a genome browser. BED detail format includes 2 additional columns (http://genome.ucsc.edu/FAQ/FAQformat#format1.7) and BED 15 includes 3 additional columns for experiment scores (http://genomewiki.ucsc.edu/index.php/Microarray_track)." .
GHGA:ProcessDataFileFormatEnum.CRAM a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "Reference-based compression of alignment format." .
GHGA:ProcessDataFileFormatEnum.GFF a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "GFF feature format (of indeterminate version)." .
GHGA:ProcessDataFileFormatEnum.HDF_5 a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "HDF5 is a data model, library, and file format for storing and managing data, based on Hierarchical Data Format (HDF). An HDF5 file appears to the user as a directed graph. The nodes of this graph are the higher-level HDF5 objects that are exposed by the HDF5 APIs: Groups, Datasets, Named datatypes. Currently supported by the Python MDTraj package. HDF5 is the new version, according to the HDF group, a completely different technology (https://support.hdfgroup.org/products/hdf4/ compared to HDF." .
GHGA:ProcessDataFileFormatEnum.SAM a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g., sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data. The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project." .
GHGA:ProcessDataFileFormatEnum.SF a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "Salmon quantification file." .
GHGA:ProcessDataFileFormatEnum.VCF a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "Variant Call Format (VCF) for sequence variation (indels, polymorphisms, structural variation)." .
GHGA:ProcessDataFileFormatEnum.WIG a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "Wiggle format (WIG) of a sequence annotation track that consists of a value for each sequence position. Typically to be displayed in a genome browser." .
GHGA:ProcessDataFileFormatEnum.OTHER a GHGA:ProcessDataFileFormatEnum ;
rdfs:comment "A file format not captured by the controlled vocabulary." .
GHGA:InstrumentModelEnum a rdfs:Class ;
rdfs:comment "Permitted values for the instrument model." .
GHGA:InstrumentModelEnum.454_GS a GHGA:InstrumentModelEnum ;
rdfs:comment "454 GS" .
GHGA:InstrumentModelEnum.454_GS_20 a GHGA:InstrumentModelEnum ;
rdfs:comment "454 GS 20" .
GHGA:InstrumentModelEnum.454_GS_FLX a GHGA:InstrumentModelEnum ;
rdfs:comment "454 GS FLX" , "454 GS FLX+" .
GHGA:InstrumentModelEnum.454_GS_FLX_TITANIUM a GHGA:InstrumentModelEnum ;
rdfs:comment "454 FS FLX Titanium" .
GHGA:InstrumentModelEnum.454_GS_JUNIOR a GHGA:InstrumentModelEnum ;
rdfs:comment "454 GS Junior" .
GHGA:InstrumentModelEnum.AB_310_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 310 Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_3130_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 3130 Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_3130_XL_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 3130XL Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_3500_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 3500 Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_3500_XL_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 3500XL Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_3730_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 3730 Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_3730_XL_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 3730XL Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_5500_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 5500 Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_5500_XL_GENETIC_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 5500XL Genetic Analyzer" .
GHGA:InstrumentModelEnum.AB_5500_XL_W_GENETIC_ANALYSIS_SYSTEM a GHGA:InstrumentModelEnum ;
rdfs:comment "AB 5500 XL-W Genetic Analysis System" .
GHGA:InstrumentModelEnum.BGISEQ_50 a GHGA:InstrumentModelEnum ;
rdfs:comment "BGISEQ-50:" .
GHGA:InstrumentModelEnum.BGISEQ_500 a GHGA:InstrumentModelEnum ;
rdfs:comment "BGISEQ-500" .
GHGA:InstrumentModelEnum.DNBSEQ_G_400 a GHGA:InstrumentModelEnum ;
rdfs:comment "DNBSEQ-G400" .
GHGA:InstrumentModelEnum.DNBSEQ_G_400_FAST a GHGA:InstrumentModelEnum ;
rdfs:comment "DNBSEQ-G400_FAST" .
GHGA:InstrumentModelEnum.DNBSEQ_G_50 a GHGA:InstrumentModelEnum ;
rdfs:comment "DNBSEQ-G50" .
GHGA:InstrumentModelEnum.DNBSEQ_T_7 a GHGA:InstrumentModelEnum ;
rdfs:comment "DNBSEQ-T7" .
GHGA:InstrumentModelEnum.ELEMENT_AVITI a GHGA:InstrumentModelEnum ;
rdfs:comment "Element AVITI" .
GHGA:InstrumentModelEnum.GRIDION a GHGA:InstrumentModelEnum ;
rdfs:comment "GridION" .
GHGA:InstrumentModelEnum.HELICOS_HELISCOPE a GHGA:InstrumentModelEnum ;
rdfs:comment "Helicos HeliScope" .
GHGA:InstrumentModelEnum.HISEQ_X_FIVE a GHGA:InstrumentModelEnum ;
rdfs:comment "HiSeq X Five" .
GHGA:InstrumentModelEnum.HISEQ_X_TEN a GHGA:InstrumentModelEnum ;
rdfs:comment "HiSeq X Ten" .
GHGA:InstrumentModelEnum.ILLUMINA_GENOME_ANALYZER a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina Genome Analyzer" .
GHGA:InstrumentModelEnum.ILLUMINA_GENOME_ANALYZER_II a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina Genome Analyzer II" .
GHGA:InstrumentModelEnum.ILLUMINA_GENOME_ANALYZER_IIX a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina Genome Analyzer IIx" .
GHGA:InstrumentModelEnum.ILLUMINA_HISCANSQ a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiScanSQ" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_1000 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq 1000" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_1500 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq 1500" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_2000 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq 2000" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_2500 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq 2500" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_3000 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq 3000" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_4000 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq 4000" .
GHGA:InstrumentModelEnum.ILLUMINA_HISEQ_X a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina HiSeq X" .
GHGA:InstrumentModelEnum.ILLUMINA_MISEQ a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina MiSeq" .
GHGA:InstrumentModelEnum.ILLUMINA_MINISEQ a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina MiniSeq" .
GHGA:InstrumentModelEnum.ILLUMINA_NOVASEQ_6000 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina NovaSeq 6000" .
GHGA:InstrumentModelEnum.ILLUMINA_NOVASEQ_X a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina NovaSeq X" .
GHGA:InstrumentModelEnum.ILLUMINA_ISEQ_100 a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina iSeq 100" .
GHGA:InstrumentModelEnum.ILLUMINA_ISCAN a GHGA:InstrumentModelEnum ;
rdfs:comment "Illumina iScan" .
GHGA:InstrumentModelEnum.ION_GENESTUDIO_S_5 a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Genestudio S5" .
GHGA:InstrumentModelEnum.ION_GENESTUDIO_S_5_PLUS a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Genestudio S5 Plus" .
GHGA:InstrumentModelEnum.ION_GENESTUDIO_S_5_PRIME a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Genestudio S5 Prime" .
GHGA:InstrumentModelEnum.ION_TORRENT_GENEXUS a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Torrent Genexus" .
GHGA:InstrumentModelEnum.ION_TORRENT_PGM a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Torrent PGM" .
GHGA:InstrumentModelEnum.ION_TORRENT_PROTON a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Torrent Proton" .
GHGA:InstrumentModelEnum.ION_TORRENT_S_5 a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Torrent S5" .
GHGA:InstrumentModelEnum.ION_TORRENT_S_5_XL a GHGA:InstrumentModelEnum ;
rdfs:comment "Ion Torrent S5 XL" .
GHGA:InstrumentModelEnum.MGISEQ_2000_RS a GHGA:InstrumentModelEnum ;
rdfs:comment "MGISEQ-2000RS" .
GHGA:InstrumentModelEnum.MINION a GHGA:InstrumentModelEnum ;
rdfs:comment "MinION" .
GHGA:InstrumentModelEnum.NEXTSEQ_1000 a GHGA:InstrumentModelEnum ;
rdfs:comment "NextSeq 1000" .
GHGA:InstrumentModelEnum.NEXTSEQ_2000 a GHGA:InstrumentModelEnum ;
rdfs:comment "NextSeq 2000" .
GHGA:InstrumentModelEnum.NEXTSEQ_500 a GHGA:InstrumentModelEnum ;
rdfs:comment "NextSeq 500" .
GHGA:InstrumentModelEnum.NEXTSEQ_550 a GHGA:InstrumentModelEnum ;
rdfs:comment "NextSeq 550" .
GHGA:InstrumentModelEnum.PACBIO_RS a GHGA:InstrumentModelEnum ;
rdfs:comment "PacBio RS" .
GHGA:InstrumentModelEnum.PACBIO_RS_II a GHGA:InstrumentModelEnum ;
rdfs:comment "PacBio RS II" .
GHGA:InstrumentModelEnum.PROMETHION a GHGA:InstrumentModelEnum ;
rdfs:comment "PromethION" .
GHGA:InstrumentModelEnum.SEQUEL a GHGA:InstrumentModelEnum ;
rdfs:comment "Sequel" .
GHGA:InstrumentModelEnum.SEQUEL_II a GHGA:InstrumentModelEnum ;
rdfs:comment "Sequel II" .
GHGA:InstrumentModelEnum.SEQUEL_IIE a GHGA:InstrumentModelEnum ;
rdfs:comment "Sequel IIe" .
GHGA:InstrumentModelEnum.UG_100 a GHGA:InstrumentModelEnum ;
rdfs:comment "UG 100" .
GHGA:InstrumentModelEnum.UNSPECIFIED a GHGA:InstrumentModelEnum ;
rdfs:comment "Instrument model is unspecified." .
GHGA:InstrumentModelEnum.OTHER a GHGA:InstrumentModelEnum ;
rdfs:comment "Other instrument model than mentioned above." .
GHGA:TissueEnum a rdfs:Class ;
rdfs:comment "A tissue as described in the BRENDA ontology." .
GHGA:SampleTypeEnum a rdfs:Class ;
rdfs:comment "The type of a sample" .
GHGA:SampleTypeEnum.CF_DNA a GHGA:SampleTypeEnum ;
rdfs:comment "Cell Free (CF), circulating DNA was used for sequencing." .
GHGA:SampleTypeEnum.DEPLETED_RNA a GHGA:SampleTypeEnum ;
rdfs:comment "Depleted RNA was used for sequencing." .
GHGA:SampleTypeEnum.DS_DNA_CHIP a GHGA:SampleTypeEnum ;
rdfs:comment "Double-stranded DNA was used for sequencing." .
GHGA:SampleTypeEnum.FFPE_DNA a GHGA:SampleTypeEnum ;
rdfs:comment "Formalin-fixed, paraffin-embedded DNA was used for sequencing." .
GHGA:SampleTypeEnum.FFPE_TOTAL_RNA a GHGA:SampleTypeEnum ;
rdfs:comment "Formalin-fixed, paraffin-embedded total DNA was used for sequencing." .
GHGA:SampleTypeEnum.GENOMIC_DNA a GHGA:SampleTypeEnum ;
rdfs:comment "Genomic DNA was used for sequencing." .
GHGA:SampleTypeEnum.PCR_PRODUCTS a GHGA:SampleTypeEnum ;
rdfs:comment "PCR products were used for sequencing." .
GHGA:SampleTypeEnum.POLY_A_RNA a GHGA:SampleTypeEnum ;
rdfs:comment "Polyadenylated (polyA) RNA was used for sequencing." .
GHGA:SampleTypeEnum.SINGLE_CELL_DNA a GHGA:SampleTypeEnum ;
rdfs:comment "DNA originating from single cells was used for sequencing." .
GHGA:SampleTypeEnum.SINGLE_CELL_RNA a GHGA:SampleTypeEnum ;
rdfs:comment "RNA originating from single cells was used for sequencing." .
GHGA:SampleTypeEnum.SINGLE_CELL_NUCLEI a GHGA:SampleTypeEnum ;
rdfs:comment "RNA originating from single cell nuclei was used for sequencing." .
GHGA:SampleTypeEnum.SMALL_RNA a GHGA:SampleTypeEnum ;
rdfs:comment "Small RNA was used for sequencing." .
GHGA:SampleTypeEnum.TOTAL_RNA a GHGA:SampleTypeEnum ;
rdfs:comment "Total RNA was used for sequencing." .
GHGA:SampleTypeEnum.OTHER a GHGA:SampleTypeEnum ;
rdfs:comment "A sample type differing from the available options was used for sequencing." .
GHGA:SequencingProtocolSequencingLayoutEnum a rdfs:Class ;
rdfs:comment "Single-end vs paired-end sequencing." .
GHGA:SequencingProtocolSequencingLayoutEnum.SE a GHGA:SequencingProtocolSequencingLayoutEnum ;
rdfs:comment "Single end sequencing." .
GHGA:SequencingProtocolSequencingLayoutEnum.PE a GHGA:SequencingProtocolSequencingLayoutEnum ;
rdfs:comment "Paired end sequencing." .
GHGA:SequencingProtocolSequencingLayoutEnum.UNSPECIFIED a GHGA:SequencingProtocolSequencingLayoutEnum ;
rdfs:comment "The sequencing layout is unspecified." .
GHGA:DiseaseOrHealthyEnum a rdfs:Class ;
rdfs:comment "Enum to capture whether a condition corresponds to a disease or a healthy state." .
GHGA:DiseaseOrHealthyEnum.DISEASE a GHGA:DiseaseOrHealthyEnum ;
rdfs:comment "Disease state." .
GHGA:DiseaseOrHealthyEnum.HEALTHY a GHGA:DiseaseOrHealthyEnum ;
rdfs:comment "Healthy state." .
GHGA:DiseaseOrHealthyEnum.NOT_APPLICABLE a GHGA:DiseaseOrHealthyEnum ;
rdfs:comment "The distinction is not applicaple." .
GHGA:GeographicalRegionEnum a rdfs:Class ;
rdfs:comment "Permitted values for geographical region." .
GHGA:StudyTypeEnum a rdfs:Class ;
rdfs:comment "Enum to capture the type of a study." .
GHGA:StudyTypeEnum.CANCER_GENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Cancer genomics" .
GHGA:StudyTypeEnum.EPIGENETICS a GHGA:StudyTypeEnum ;
rdfs:comment "Epigenetics" .
GHGA:StudyTypeEnum.EXOME_SEQUENCING a GHGA:StudyTypeEnum ;
rdfs:comment "Exome sequencing" .
GHGA:StudyTypeEnum.FORENSIC_GENETICS a GHGA:StudyTypeEnum ;
rdfs:comment "Forensic genetics" .
GHGA:StudyTypeEnum.PALEO_GENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Paleo genomics" .
GHGA:StudyTypeEnum.GENE_REGULATION_STUDY a GHGA:StudyTypeEnum ;
rdfs:comment "Gene regulation study" .
GHGA:StudyTypeEnum.METAGENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Metagenomics" .
GHGA:StudyTypeEnum.POOLED_CLONE_SEQUENCING a GHGA:StudyTypeEnum ;
rdfs:comment "Pooled clone sequencing" .
GHGA:StudyTypeEnum.POPULATION_GENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Population genomics" .
GHGA:StudyTypeEnum.RNASEQ a GHGA:StudyTypeEnum ;
rdfs:comment "RNA sequencing" .
GHGA:StudyTypeEnum.RESEQUENCING a GHGA:StudyTypeEnum ;
rdfs:comment "Resequencing" .
GHGA:StudyTypeEnum.SYNTHETIC_GENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Synthetic genomics" .
GHGA:StudyTypeEnum.TRANSCRIPTOME_ANALYSIS a GHGA:StudyTypeEnum ;
rdfs:comment "Transcriptome analysis" .
GHGA:StudyTypeEnum.WHOLE_GENOME_SEQUENCING a GHGA:StudyTypeEnum ;
rdfs:comment "Whole genome sequencing" .
GHGA:StudyTypeEnum.GWAS a GHGA:StudyTypeEnum ;
rdfs:comment "Genome Wide Association Study" .
GHGA:StudyTypeEnum.RARE_DISEASE a GHGA:StudyTypeEnum ;
rdfs:comment "Rare disease study" .
GHGA:StudyTypeEnum.CANCER a GHGA:StudyTypeEnum ;
rdfs:comment "Cancer study" .
GHGA:StudyTypeEnum.COMMON_DISEASE a GHGA:StudyTypeEnum ;
rdfs:comment "Common disease study" .
GHGA:StudyTypeEnum.NEURODEGENERATIVE_DISEASE a GHGA:StudyTypeEnum ;
rdfs:comment "Neurodegenerative disease study" .
GHGA:StudyTypeEnum.CASE_CONTROL a GHGA:StudyTypeEnum ;
rdfs:comment "Case-control study" .
GHGA:StudyTypeEnum.FAMILY a GHGA:StudyTypeEnum ;
rdfs:comment "Family study" .
GHGA:StudyTypeEnum.HEREDITARY_DISEASE a GHGA:StudyTypeEnum ;
rdfs:comment "Hereditary disease study" .
GHGA:StudyTypeEnum.GENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Genomics study" .
GHGA:StudyTypeEnum.EPIGENOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Epigenomics study" .
GHGA:StudyTypeEnum.TRANSCRIPTOMICS a GHGA:StudyTypeEnum ;
rdfs:comment "Transcriptomics study" .
GHGA:StudyTypeEnum.SINGLE_CELL_SEQUENCING a GHGA:StudyTypeEnum ;
rdfs:comment "Single-cell sequencing study" .
GHGA:StudyTypeEnum.SINGLE_CENTER a GHGA:StudyTypeEnum ;
rdfs:comment "Single-center study" .
GHGA:StudyTypeEnum.MULTI_CENTER a GHGA:StudyTypeEnum ;
rdfs:comment "Multi-center study" .
GHGA:StudyTypeEnum.COHORT a GHGA:StudyTypeEnum ;
rdfs:comment "Cohort study" .
GHGA:StudyTypeEnum.LONGITUDINAL a GHGA:StudyTypeEnum ;
rdfs:comment "Longitudinal study" .
GHGA:StudyTypeEnum.TIME_SERIES a GHGA:StudyTypeEnum ;
rdfs:comment "Time series study" .
GHGA:StudyTypeEnum.INTERVENTIONAL a GHGA:StudyTypeEnum ;
rdfs:comment "Interventional study" .
GHGA:StudyTypeEnum.NON_INTERVENTIONAL a GHGA:StudyTypeEnum ;
rdfs:comment "Non-interventional study" .
GHGA:StudyTypeEnum.COMMUNITY_BASED a GHGA:StudyTypeEnum ;
rdfs:comment "Community-based study" .
GHGA:StudyTypeEnum.TARGETED_SEQUENCING a GHGA:StudyTypeEnum ;
rdfs:comment "Targeted sequencing using gene panels." .
GHGA:StudyTypeEnum.OTHER a GHGA:StudyTypeEnum ;
rdfs:comment "A study type not captured by the above mentioned." .
GHGA:AgeRangeEnum a rdfs:Class ;
rdfs:comment "Enum to capture the age range that an Indiviudal belongs to." .
GHGA:AgeRangeEnum.0_TO_5 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 0 to 5." .
GHGA:AgeRangeEnum.6_TO_10 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 6 to 10." .
GHGA:AgeRangeEnum.11_TO_15 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 11 to 15." .
GHGA:AgeRangeEnum.16_TO_20 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 16 to 20." .
GHGA:AgeRangeEnum.21_TO_25 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 21 to 25." .
GHGA:AgeRangeEnum.26_TO_30 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 26 to 30." .
GHGA:AgeRangeEnum.31_TO_35 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 31 to 35." .
GHGA:AgeRangeEnum.36_TO_40 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 36 to 40." .
GHGA:AgeRangeEnum.41_TO_45 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 41 to 45." .
GHGA:AgeRangeEnum.46_TO_50 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 46 to 50." .
GHGA:AgeRangeEnum.51_TO_55 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 51 to 55." .
GHGA:AgeRangeEnum.56_TO_60 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 56 to 60." .
GHGA:AgeRangeEnum.61_TO_65 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 61 to 65." .
GHGA:AgeRangeEnum.66_TO_70 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 66 to 70." .
GHGA:AgeRangeEnum.71_TO_75 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 71 to 75." .
GHGA:AgeRangeEnum.76_TO_80 a GHGA:AgeRangeEnum ;
rdfs:comment "Age between 76 to 80." .
GHGA:AgeRangeEnum.81_OR_OLDER a GHGA:AgeRangeEnum ;
rdfs:comment "Age above 80." .
GHGA:AgeRangeEnum.UNKNOWN a GHGA:AgeRangeEnum ;
rdfs:comment "Age range unknown." .
GHGA:CaseControlStatusEnum a rdfs:Class ;
rdfs:comment "Enum to capture whether a condition corresponds to a case or a control condition." .
GHGA:CaseControlStatusEnum.CASE a GHGA:CaseControlStatusEnum ;
rdfs:comment "The participant is a true case for the phenotype under consideration." .
GHGA:CaseControlStatusEnum.CONTROL a GHGA:CaseControlStatusEnum ;
rdfs:comment "The participant is a true control for the phenotype under consideration." .
GHGA:CaseControlStatusEnum.OTHER a GHGA:CaseControlStatusEnum ;
rdfs:comment "The participant's status is neither case nor control." .
GHGA:CaseControlStatusEnum.UNKNOWN a GHGA:CaseControlStatusEnum ;
rdfs:comment "The participant's status is not known." .
GHGA:LibraryPreparationKitRetailNameEnum a rdfs:Class ;
rdfs:comment "Permitted values for library preparation kit retail name." .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_SINGLE_CELL_3_V_2 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Single Cell 3' v2 Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_SINGLE_CELL_3_V_3 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Single Cell 3' v3 Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_SINGLE_CELL_3_V_4 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Single Cell 3' v4 Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_SINGLE_CELL_5_V_3 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Single Cell 5' v3 Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_ATAC_V_1 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium ATAC v1 Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_ATAC_V_2 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium ATAC v2 Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_MULTIOME_ATAC_RNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Multiome ATAC + RNA Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_VISIUM_FF a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Visium FF Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_VISIUM_FFPE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Visium FFPE Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.10_X_GENOMICS_CHROMIUM_VISIUM_CYTASSIST a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "10X Genomics Chromium Visium Cytassist Reagent Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ACCEL_NGS_2_S_PLUS_DNA_LIBRARY_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Accel-NGS 2S Plus DNA Library Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ACCEL_NGS_METHYL_SEQ_DNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Accel-NGS Methyl-Seq DNA Library Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_STRAND_SPECIFIC_RNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Strand Specific RNA Library Preparation Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CUSTOM_ENRICHMENT_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Target Enrichment System" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_3 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V3" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_4 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V4" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_4_UTRS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V4 + UTRs" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_5 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V5" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_5_UTRS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V5 + UTRs" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_6 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V6" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_6_UTRS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Human All Exon V6 + UTRs" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_6_PLUS_ONE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT Human All Exon V6 Plus 1" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_6_PLUS_TWO a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT Human All Exon V6 Plus 2" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_8 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT HS Human All Exon V8" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_8_UTRS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT HS Human All Exon V8 + UTRs" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_V_8_NCV a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT HS Human All Exon V8 + NCV" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_QXT_WGS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelectQXT Library Prep for WGS" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_XT_HS_HUMAN_ALL_EXON_V_7 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect CT HS and Low Input Human All Exon V7" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_XT_HS_HUMAN_ALL_EXON_V_7_ONE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect CT HS and Low Input Human All Exon V7 Plus 1" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_XT_HS_HUMAN_ALL_EXON_V_7_TWO a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect CT HS and Low Input Human All Exon V7 Plus 2" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CLINICAL_RESEARCH_EXOME_V_2 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT Clinical Research Exome V2" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CLINICAL_RESEARCH_EXOME_V_2_ONE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT Clinical Research Exome V2 Plus 1" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CLINICAL_RESEARCH_EXOME_V_2_TWO a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect XT Clinical Research Exome V2 Plus 2" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_CLEAR_SEQ_COMPREHENSIVE_CANCER_XT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent ClearSeq Comprehensive Cancer XT" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CUSTOM_TIER_1 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Custom Tier1" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CUSTOM_TIER_2 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Custom Tier2" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CUSTOM_TIER_3 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Custom Tier3" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CUSTOM_TIER_4 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Custom Tier4" .
GHGA:LibraryPreparationKitRetailNameEnum.AGILENT_SURE_SELECT_CUSTOM_TIER_5 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Agilent SureSelect Custom Tier5" .
GHGA:LibraryPreparationKitRetailNameEnum.AVENIO_CT_DNA_TARGETED_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "AVENIO ctDNA Targeted Kit V2" .
GHGA:LibraryPreparationKitRetailNameEnum.AVENIO_CT_DNA_SURVEILLANCE_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "AVENIO ctDNA Surveillance Kit V2" .
GHGA:LibraryPreparationKitRetailNameEnum.AVENIO_CT_DNA_EXPANDED_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "AVENIO ctDNA Expanded Kit V2" .
GHGA:LibraryPreparationKitRetailNameEnum.BD_RHAPSODY_WTA_AMPLIFICATION a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "BD Rhapsody WTA Amplification Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.IDT_X_GEN_EXOME_RESEARCH_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "IDT xGen Exome Research Panel V2" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_DNA_PCR_FREE_PREP a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina DNA PCR-Free Prep" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_NEXTERA_DNA_FLEX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Nextera DNA Flex" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_DNA_PREP a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina DNA Prep" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_NEXTERA_EXOME_ENRICHMENT_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Nextera Exome Enrichment Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_DNA_PREP_WITH_ENRICHMENT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina DNA Prep with Enrichment" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_DNA_PREP_WITH_EXOME_2_5_ENRICHMENT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina DNA Prep with Exome 2.5 Enrichment" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_STRANDED_M_RNA_PREP a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Stranded mRNA Prep" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_NEXTERA_DNA_LIBRARY_PREPARATION_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Nextera DNA Library Preparation Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_NEXTERA_XT_DNA_LIBRARY_PREPARATION_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Nextera XT DNA Library Preparation Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_RNA_PREP_WITH_ENRICHMENT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina RNA Prep with Enrichment" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_CH_IP_LIBRARY_PREPARATION_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "TruSeq ChIP Library Preparation Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_CUSTOM_AMPLICON_LOW_INPUT_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Custom Amplicon Low Input Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_CUSTOM_AMPLICON_V_1_5 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Custom Amplicon v1.5" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_DNA_EXOME a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq DNA Exome" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_DNA_NANO a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq DNA Nano" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_DNA_NANO_LIBRARY_PREP_KIT_FOR_NEO_PREP a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq DNA Nano Library Prep Kit for NeoPrep" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_NANO_DNA_HT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Nano DNA High Throughput" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_NANO_DNA_LT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Nano DNA Low Throughput" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_FFPE_DNA_LIBRARY_PREP_QC_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "TruSeq FFPE DNA Library Prep QC Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_DNA_PCR_FREE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq DNA PCR-Free" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_RNA_LIBRARY_PREP_KIT_V_2 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq RNA Library Prep Kit v2" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_RNA_EXOME a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq RNA Exome" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_SMALL_RNA_LIBRARY_PREPARATION_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Small RNA Library Preparation Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_STRANDED_TOTAL_RNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Stranded Total RNA" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_STRANDED_M_RNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Stranded mRNA" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_STRANDED_TOTAL_RNA_WITH_RIBO_ZERO_GOLD a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Stranded Total RNA with Ribo-Zero Globin" .
GHGA:LibraryPreparationKitRetailNameEnum.VAHTS_TOTAL_RNA_SEQ_H_M_R_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "VAHTS Total RNA (H/M/R) Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_NEXTERA_XT_DNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Nextera XT DNA Library Preparation Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_TARGETED_RNA_EXPRESSION_STEM_CELL_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Targeted RNA Expression Stem Cell Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SEQ_TARGETED_RNA_EXPRESSION_P_53_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSeq Targeted RNA Expression p53 Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_ONCOLOGY_500 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight Oncology 500" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_ONCOLOGY_500_HIGH_THROUGHPUT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight Oncology High Throughput" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_ONCOLOGY_500_CT_DNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight Oncology 500 ctDNA" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_RNA_FUSION_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight RNA Fusion Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_RNA_PAN_CANCER a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight RNA Pan-Cancer" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_TUMOR_15 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight Tumor 15" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_TRU_SIGHT_TUMOR_170 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina TruSight Tumor 170" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_BRCA_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina BRCA Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_CANCER_HOTSPOT_PANEL_V_2 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Cancer Hotspot Panel v2" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_CHILDHOOD_CANCER_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Childhood Cancer Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_COMPREHENSIVE_PANEL_V_3 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Comprehensive Panel v3" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_CUSTOM_DNA_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Custom DNA Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_CUSTOM_RNA_FUSION_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Custom RNA Fusion Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_CUSTOM_RNA_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Custom RNA Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_FOCUS_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Focus Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_IMMUNE_REPERTOIRE_PLUS_TCR_BETA_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Immune Repertoire Plus, TCR beta Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_IMMUNE_RESPONSE_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Immune Response Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_LIBRARY_PREP_INDEXES_AND_ACCESSOIRES a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Library Prep, Indexes, and Accessoires" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_MYELOID_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Myeloid Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_ON_DEMAND a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina On-Demand" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_TCR_BETA_SR_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina TCR beta-SR Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_AMPLI_SEQ_FOR_ILLUMINA_TRANSCRIPTOME_HUMAN_GENE_EXPRESSION_PANEL a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina AmpliSeq for Illumina Transcriptome Human Gene Expression Panel" .
GHGA:LibraryPreparationKitRetailNameEnum.ILLUMINA_COMPLETE_LONG_READ_PREP_HUMAN a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Illumina Complete Long Read Prep, Human" .
GHGA:LibraryPreparationKitRetailNameEnum.INFORM_ONCO_PANEL_HG_19 a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Inform Onco Panel Hg19" .
GHGA:LibraryPreparationKitRetailNameEnum.ION_AMPLI_SEQ_EXOME_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Ion AmpliSeq Exome RDY Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.KAPA_HIFI_HOT_START_READYMIX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "KAPA HiFi HotStart ReadyMix Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.KAPA_HYPER_PREP_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "KAPA HyperPrep Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.KAPA_HYPER_PREP_PCR_FREE_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "KAPA HyperPrep Kit (PCR-free)" .
GHGA:LibraryPreparationKitRetailNameEnum.KAPA_HYPER_PLUS_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "KAPA HyperPlus Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.KAPA_M_RNA_HYPER_PREP_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "KAPA RNA HyperPrep Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_GLOBIN_R_RNA_DEPLETION_HU_MO_RAT_RNA_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Globin & rRNA Depletion Kit (Human/Mouse/Rat) with RNA Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_GLOBIN_R_RNA_DEPLETION_KIT_HUMAN_MOUSE_RAT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Globin & rRNA Depletion Kit (Human/Mouse/Rat)" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_GLOBIN_R_RNA_DEPLET_V_2_HU_MO_RAT_RNA_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Globin & rRNA Depletion Kit v2 (Human/Mouse/Rat) with RNA Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_GLOBIN_R_RNA_DEPLETION_KIT_V_2_HUMAN_MOUSE_RAT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Globin & rRNA Depletion Kit v2 (Human/Mouse/Rat)" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_RNA_DEPLETION_CORE_REAGENT_SET a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext RNA Depletion Core Reagent Set" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_RNA_DEPLETION_CORE_REAGENT_SET_RNA_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext RNA Depletion Core Reagent Set with RNA Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_POLY_A_M_RNA_MAGNETIC_ISOLATION_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Poly(A) mRNA Magnetic Isolation Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_SINGLE_CELL_LOW_INPUT_CDNA_SYNTHESIS_AND_AMPLIFICATION_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Single Cell / Low Input cDNA Synthesis and Amplification Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_SINGLE_CELL_LOW_INPUT_RNA_LIBRARY_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Single Cell / Low Input RNA Library Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_RNA_ULTRA_II_FIRST_STRAND_SYNTHESIS_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II RNA First Strand Synthesis Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_RNA_ULTRA_II_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II RNA Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_RNA_ULTRA_II_LIBRARY_PREP_WITH_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II RNA Library Prep with Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DIRECTIONAL_RNA_SAMPLE_WITH_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II Directional RNA Library Prep with Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DIRECTIONAL_RNA_SECOND_STRAND_SYNTHESIS_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II Directional RNA Second Strand Synthesis Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_DNA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra DNA Library Prep for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DNA_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II DNA Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DNA_ILLUMINA_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II DNA Library Prep for Illumina with Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DIRECTIONAL_RNA_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II Directional RNA Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_FS_DNA_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II FS DNA Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_END_REPAIR_DA_TAILING_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II End Repair/dA-Tailing Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_FS_DNA_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II FS DNA Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_FS_DNA_ILLUMINA_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II FS DNA Library Prep for Illumina with Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DNA_PCR_FREE_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II DNA PCR-free Library Prep with Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_FS_DNA_PCR_FREE_SAMPLE_PURIFICATION_BEADS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II FS DNA PCR-free Library Prep with Sample Purification Beads" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_DNA_PCR_FREE_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II DNA PCR-free Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_FS_DNA_PCR_FREE_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II FS DNA PCR-free Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_LIGATION_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II Ligation Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_II_Q_5_MASTER_MIX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Ultra II Q5 Master Mix" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_Q_5_HOT_START_HIFI_PCR_MASTER_MIX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Q5 Hot Start HiFi PCR Master Mix" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_TEMPLATE_SWITCHING_RT_ENZYME_MIX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEB Template Switching RT Enzyme Mix" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_LIBRARY_PCR_MASTER_MIX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Library PCR Master Mix" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_SHEAR a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext UltraShear" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ULTRA_SHEAR_FFPE_DNA_LIBRARY_PREP_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext UltraShear FFPE DNA Library Prep Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_COMPANION_MODULE_ONT_LIGATION_SEQUENCING a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Companion Module for Oxford Nanopore Technologies Ligation Sequencing" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_FAST_DNA_FRAGMENTATION_AND_LIBRARY_PREP_SET_FOR_ION_TORRENT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Fast DNA Fragmentation and Library Prep Set for Ion Torrent" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_FAST_DNA_LIBRARY_PREP_SET_FOR_ION_TORRENT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Fast DNA Library Prep Set for Ion Torrent" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_FFPE_DNA_LIBRARY_PREP_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext FFPE DNA Library Prep Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_FFPE_DNA_REPAIR_MIX a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext FFPE DNA Repair Mix" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_FFPE_DNA_REPAIR_V_2_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext FFPE DNA Repair v2 Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_DS_DNA_FRAGMENTASE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext dsDNA Fragmentase" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_MAGNETIC_SEPARATION_RACK a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Magnetic Separation Rack" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_LIBRARY_QUANT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Library Quant for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_LIBRARY_QUANT_DNA_STANDARDS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Library Quant DNA Standards" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_MAGNESIUM_RNA_FRAGMENTATION_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Magnesium RNA Fragmentation Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_DIRECT_GENOTYPING_SOLUTION a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Direct Genotyping Solution" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ENZYMATIC_METHYL_SEQ_CONVERSION_MODULE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Enzymatic Methyl-seq Conversion Module" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_ENZYMATIC_METHYL_SEQ_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Enzymatic Methyl-seq Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_MULTIPLEX_SMALL_RNA_LIBRARY_PREP_KIT_FOR_ILLUMINA a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Multiplex Small RNA Library Prep Kit for Illumina" .
GHGA:LibraryPreparationKitRetailNameEnum.NEB_NEXT_SMALL_RNA_LIBRARY_PREP_SET_FOR_ILLUMINA_MULTIPLEX_COMPATIBLE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "NEBNext Small RNA Library Prep Set for Illumina (Multiplex Compatible)" .
GHGA:LibraryPreparationKitRetailNameEnum.EPI_MARK_5_HMC_AND_5_MC_ANALYSIS_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "EpiMark 5-hmC and 5-mC Analysis Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.EPI_MARK_METHYLATED_DNA_ENRICHMENT_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "EpiMark Methylated DNA Enrichment Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.EPI_MARK_N_6_METHYLADENOSINE_ENRICHMENT_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "EpiMark N6-Methyladenosine Enrichment Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.EPI_MARK_NUCLEOSOME_ASSEMBLY_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "EpiMark Nucleosome Assembly Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.EPI_MARK_HOT_START_TAG_DNA_POLYMERASE a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "EpiMark Hot Start Tag DNA Polymerase" .
GHGA:LibraryPreparationKitRetailNameEnum.PICO_METHYL_SEQ a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Pico Methyl-Seq Library Prep Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.TAKARA_SMART_SEQ_V_4_ULTRA_LOW_INPUT_RNA_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Takara SMART-Seq v4 Ultra Low Input RNA Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.TAKARA_SMART_ER_STRANDED_TOTAL_RNA_SEQ_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Takara SMARTer Stranded RNA-Seq Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.TAKARA_SMART_ER_ULTRA_LOW_INPUT_RNA_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Takara SMARTer Universal Low Input RNA Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.TAKARA_SMART_SEQ_2_TAG a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Takara Smart-Seq2 library preparation" .
GHGA:LibraryPreparationKitRetailNameEnum.TAKARA_SMART_ER_PREP_X_DNA_LIBRARY_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Takara SMARTer PrepX DNA Library Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.SUPER_SCRIPT_II_RT_BULK a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "SuperScript II Reverse Transkriptase" .
GHGA:LibraryPreparationKitRetailNameEnum.SURE_CELL_ATAC_SEQ_LIBRARY_PREP_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "SureCell ATAC-Seq Library Prep Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.EUROFINS_ENRICHMENT_CUSTOM a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Eurofins Genomics Custom Enrichment Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.TWIST_HUMAN_CORE_EXOME_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Twist Human Core Exome Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.TWIST_HUMAN_CORE_EXOME_PLUS_KIT a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "Twist Human Core Exome Plus Kit" .
GHGA:LibraryPreparationKitRetailNameEnum.ULTRALOW_METHYL_SEQ_WITH_TRUE_METHYL_OX_BS a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "TECAN Ultralow Methyl-Seq with TrueMethyl oxBS" .
GHGA:LibraryPreparationKitRetailNameEnum.OTHER a GHGA:LibraryPreparationKitRetailNameEnum ;
rdfs:comment "A Library Preparation Kit not captured by the controlled vocabulary." .
GHGA:EndBiasEnum a rdfs:Class ;
rdfs:comment "Permitted values for end bias." .
GHGA:EndBiasEnum.3_PRIME_END a GHGA:EndBiasEnum ;
rdfs:comment "The sequencing method preferentially captures the nucleic acids towards the 3 prime end of the targeted molecule." .
GHGA:EndBiasEnum.5_PRIME_END a GHGA:EndBiasEnum ;
rdfs:comment "The sequencing method preferentially captures the nucleic acids towards the 5 prime end of the targeted molecule." .
GHGA:EndBiasEnum.FULL_LENGTH a GHGA:EndBiasEnum ;
rdfs:comment "Captures the full length of the targeted molecule." .
GHGA:FlowCellTypeEnum a rdfs:Class ;
rdfs:comment "Permitted values for flow cell type." .
GHGA:FlowCellTypeEnum.ELEMENT_BIOSCIENCES_AVITI_LOW_OUTPUT a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Element Biosciences Aviti Low Output flow cell." .
GHGA:FlowCellTypeEnum.ELEMENT_BIOSCIENCES_AVITI_MID_OUTPUT a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Element Biosciences Aviti Mid Output flow cell." .
GHGA:FlowCellTypeEnum.ELEMENT_BIOSCIENCES_AVITI_HIGH_OUTPUT a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Element Biosciences Aviti High Output flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_SP a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq SP flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_S_1 a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq S1 flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_S_2 a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq S2 flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_S_4 a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq S4 flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_XPLUS_1_5_B a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq X Plus 1.5B flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_XPLUS_10_B a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq X Plus 10B flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NOVA_SEQ_XPLUS_25_B a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NovaSeq X Plus 25B flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_MISEQ_MICRO a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina MiSeq Micro flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_MISEQ_NANO a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina MiSeq Nano flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NEXTSEQ_HIGH_OUTPUT a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NextSeq High Output flow cell." .
GHGA:FlowCellTypeEnum.ILLUMINA_NEXTSEQ_MID_OUTPUT a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Illumina NextSeq Mid Output flow cell." .
GHGA:FlowCellTypeEnum.PACBIO_SEQUELL_II a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of PacBio Sequell II flow cell." .
GHGA:FlowCellTypeEnum.PROMETHION a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of PromethION flow cell." .
GHGA:FlowCellTypeEnum.FLONGLE a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of Flongle flow cell." .
GHGA:FlowCellTypeEnum.MINION a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of MinION flow cell." .
GHGA:FlowCellTypeEnum.GRIDION a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of GridION flow cell." .
GHGA:FlowCellTypeEnum.OTHER a GHGA:FlowCellTypeEnum ;
rdfs:comment "Usage of a flow cell not captured by the controlled vocabulary." .
GHGA:StorageEnum a rdfs:Class ;
rdfs:comment "Enum to capture how a Sample or Biospecimen was stored." .
GHGA:StorageEnum.REFRIGERATOR a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was stored in a refrigerator at 2°C to 5°C." .
GHGA:StorageEnum.FREEZER a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was stored in a freezer at -20°C." .
GHGA:StorageEnum.ULTRA_LOW_FREEZER a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was stored in a ultra-low freezer at -80°C." .
GHGA:StorageEnum.CRYOGENIC_FREEZER a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was stored in a cryogenic freezer at -150°C to -190°C." .
GHGA:StorageEnum.FFPE a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was stored using formalin-fixed paraffin-embedding (FFPE)." .
GHGA:StorageEnum.NONE a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was not stored." .
GHGA:StorageEnum.OTHER a GHGA:StorageEnum ;
rdfs:comment "The sample / biospecimen was stored with a method differing from the available options." .
GHGA:StorageEnum.UNKNOWN a GHGA:StorageEnum ;
rdfs:comment "The storage method is unknown." .
GHGA:PrimerEnum a rdfs:Class ;
rdfs:comment "Permitted values for primer." .
a GHGA:PrimerEnum ;
rdfs:comment "An oligonucleotide primer consisting of thymidine bases only. It is used to target messenger RNA molecules with poly-adenosine 3' end." .
a GHGA:PrimerEnum ;
rdfs:comment "An oligonucleotide primer with random sequence." .
GHGA:PrimerEnum.GENE_SPECIFIC a GHGA:PrimerEnum ;
rdfs:comment "Ready-to-use, usually commercially prepared primers that are used to detect specific genes." .
GHGA:PrimerEnum.OTHER a GHGA:PrimerEnum ;
rdfs:comment "A primer not captured by the controlled vocabulary." .
GHGA:IsolationEnum a rdfs:Class ;
rdfs:comment "Describes how biomaterial was isolated." .
GHGA:IsolationEnum.BLOOD_DRAW a GHGA:IsolationEnum ;
rdfs:comment "Extraction of a blood specimen." .
GHGA:IsolationEnum.SURGICAL_REMOVAL a GHGA:IsolationEnum ;
rdfs:comment "Extraction of a sample or part of an organ in a surgical procedure." .
GHGA:IsolationEnum.SALIVA_COLLECTION a GHGA:IsolationEnum ;
rdfs:comment "Collection of saliva." .
GHGA:IsolationEnum.BUCCAL_SWAB a GHGA:IsolationEnum ;
rdfs:comment "Sample collection using a buccal swab." .
GHGA:IsolationEnum.OTHER a GHGA:IsolationEnum ;
rdfs:comment "The sample was collected using a method differing from the available options." .
GHGA:IsolationEnum.UNKNOWN a GHGA:IsolationEnum ;
rdfs:comment "The method of sample collection is not known." .