PREFIX ak_schema:
PREFIX rdf:
PREFIX rdfs:
PREFIX xsd:
a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
a rdf:Property ;
rdfs:comment "A human-readable name for a thing" , "The title of a reference" ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:comment "A human-readable description for a thing" ;
rdfs:range xsd:string .
ak_schema:MhcAllele a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:allele_designation a rdf:Property ;
rdfs:range xsd:string .
ak_schema:gene a rdf:Property ;
rdfs:comment "The MHC gene to which the described allele belongs" ;
rdfs:range ak_schema:GeneOntology .
ak_schema:reference_set_ref a rdf:Property ;
rdfs:comment "Repository and list from which it was taken (issuer/name/version)" ;
rdfs:range xsd:string .
ak_schema:TimePoint a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:time_point_label a rdf:Property ;
rdfs:comment "Informative label for the time point" ;
rdfs:range xsd:string .
ak_schema:time_point_value a rdf:Property ;
rdfs:comment "Value of the time point" ;
rdfs:range xsd:float .
ak_schema:time_point_unit a rdf:Property ;
rdfs:comment "Unit of the time point" ;
rdfs:range ak_schema:TimePointUnitOntology .
ak_schema:UnrearrangedSequence a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:gff_seqid a rdf:Property ;
rdfs:comment "Sequence (from the assembly) of a window including the gene and preferably also the promoter region." ;
rdfs:range xsd:string .
ak_schema:sequence_id a rdf:Property ;
rdfs:range xsd:string .
ak_schema:patch_no a rdf:Property ;
rdfs:comment "Genome assembly patch number in which this gene was determined" ;
rdfs:range xsd:string .
ak_schema:curation a rdf:Property ;
rdfs:range xsd:string .
ak_schema:sequence a rdf:Property ;
rdfs:comment "Nucleotide sequence." ;
rdfs:range xsd:string .
ak_schema:gff_end a rdf:Property ;
rdfs:comment "Genomic co-ordinates of the end of the sequence of interest described in this record in Ensemble GFF version 3." ;
rdfs:range xsd:integer .
ak_schema:repository_name a rdf:Property ;
rdfs:range xsd:string .
ak_schema:gff_start a rdf:Property ;
rdfs:comment "Genomic co-ordinates of the start of the sequence of interest described in this record in Ensemble GFF version 3." ;
rdfs:range xsd:integer .
ak_schema:strand a rdf:Property ;
rdfs:comment "sense (+ or -)" ;
rdfs:range ak_schema:StrandEnum .
ak_schema:repository_ref a rdf:Property ;
rdfs:comment "Queryable id or accession number of the sequence published by the repository" ;
rdfs:range xsd:string .
ak_schema:AkObject a rdfs:Class ;
rdfs:comment "Anything uniquely identifiable in the AKC." .
ak_schema:NamedThing a rdfs:Class ;
rdfs:comment "Name and description for AKC things." ;
rdfs:subClassOf ak_schema:AkObject .
ak_schema:Clone a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:germline_alignment_aa a rdf:Property ;
rdfs:range xsd:string .
ak_schema:data_processing_id a rdf:Property ;
rdfs:range xsd:string .
ak_schema:junction_aa_length a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:clone_count a rdf:Property ;
rdfs:comment "Absolute count of the size (number of members) of this clone in the repertoire. This could simply be the number of sequences (Rearrangement records) observed in this clone, the number of distinct cell barcodes (unique cell_id values), or a more sophisticated calculation appropriate to the experimental protocol. Absolute count is provided versus a frequency so that downstream analysis tools can perform their own normalization." ;
rdfs:range xsd:integer .
ak_schema:repertoire_id a rdf:Property ;
rdfs:range xsd:string .
ak_schema:sequences a rdf:Property ;
rdfs:comment "List sequence_id strings that act as keys to the Rearrangement records for members of the clone." ;
rdfs:range xsd:string .
ak_schema:j_alignment_start a rdf:Property ;
rdfs:comment "Start position of the J gene alignment in both the sequence_alignment and germline_alignment fields (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:umi_count a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:junction_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the junction." ;
rdfs:range xsd:string .
ak_schema:clone_id a rdf:Property ;
rdfs:range xsd:string .
ak_schema:seed_id a rdf:Property ;
rdfs:comment "sequence_id of the seed sequence. Empty string (or null) if there is no seed sequence." ;
rdfs:range xsd:string .
ak_schema:junction_start a rdf:Property ;
rdfs:comment "Junction region start position in the alignment (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:j_alignment_end a rdf:Property ;
rdfs:comment "End position of the J gene alignment in both the sequence_alignment and germline_alignment fields (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:junction_end a rdf:Property ;
rdfs:comment "Junction region end position in the alignment (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:junction_length a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:j_call a rdf:Property ;
rdfs:range xsd:string .
ak_schema:d_alignment_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:v_call a rdf:Property ;
rdfs:range xsd:string .
ak_schema:germline_alignment a rdf:Property ;
rdfs:range xsd:string .
ak_schema:d_call a rdf:Property ;
rdfs:range xsd:string .
ak_schema:d_alignment_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:v_alignment_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:v_alignment_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:junction a rdf:Property ;
rdfs:range xsd:string .
ak_schema:SubjectGenotype a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:receptor_genotype_set a rdf:Property ;
rdfs:comment "Immune receptor genotype set for this subject." ;
rdfs:range ak_schema:GenotypeSet .
ak_schema:mhc_genotype_set a rdf:Property ;
rdfs:comment "MHC genotype set for this subject." ;
rdfs:range ak_schema:MhcGenotypeSet .
a rdfs:Class ;
rdfs:subClassOf .
ak_schema:trg_chain a rdf:Property ;
rdfs:comment "T cell receptor gamma chain" ;
rdfs:range ak_schema:Chain .
ak_schema:trd_chain a rdf:Property ;
rdfs:comment "T cell receptor delta chain" ;
rdfs:range ak_schema:Chain .
ak_schema:type a rdf:Property ;
rdfs:range xsd:string .
ak_schema:PcrTarget a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:pcr_target_locus a rdf:Property ;
rdfs:comment "Designation of the target locus. Note that this field uses a controlled vocubulary that is meant to provide a generic classification of the locus, not necessarily the correct designation according to a specific nomenclature." ;
rdfs:range ak_schema:PcrTargetLocusEnum .
ak_schema:forward_pcr_primer_target_location a rdf:Property ;
rdfs:comment "Position of the most distal nucleotide templated by the forward primer or primer mix" ;
rdfs:range xsd:string .
ak_schema:reverse_pcr_primer_target_location a rdf:Property ;
rdfs:comment "Position of the most proximal nucleotide templated by the reverse primer or primer mix" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:comment "A scientific investigation." ;
rdfs:subClassOf ak_schema:PlannedProcess .
a rdf:Property ;
rdfs:comment "Identifier for external archival resource for the investigation, e.g., BioProject" , "The source URLs for a reference" ;
rdfs:range xsd:anyURI .
ak_schema:assays a rdf:Property ;
rdfs:comment "The assays performed by the investigation" ;
rdfs:range .
a rdf:Property ;
rdfs:comment "The participants involved with the investigation" , "The participant of a life event" , "The material relevant to an immune exposure" ;
rdfs:range , ak_schema:ExposureMaterialOntology .
ak_schema:update_date a rdf:Property ;
rdfs:comment "Subsequence updates to the investigation or its data" ;
rdfs:range xsd:dateTime .
ak_schema:inclusion_exclusion_criteria a rdf:Property ;
rdfs:comment "List of criteria for inclusion/exclusion for the study" ;
rdfs:range xsd:string .
ak_schema:documents a rdf:Property ;
rdfs:comment "The documents produced by the investigation" ;
rdfs:range .
ak_schema:investigation_type a rdf:Property ;
rdfs:comment "Type of study design" ;
rdfs:range ak_schema:InvestigationTypeOntology .
ak_schema:release_date a rdf:Property ;
rdfs:comment "Date of this release" ;
rdfs:range xsd:dateTime .
ak_schema:simulations a rdf:Property ;
rdfs:comment "The simulations performed by the investigation" ;
rdfs:range .
ak_schema:conclusions a rdf:Property ;
rdfs:comment "The conclusions from the investigation" ;
rdfs:range .
a rdfs:Class ;
rdfs:comment "An event in which a study participant participates." , "An event that is part of the study design of an investigation." , "An event involving the immune system of a study participant." ;
rdfs:subClassOf ak_schema:NamedThing .
ak_schema:duration a rdf:Property ;
rdfs:comment "The duration of this life event" ;
rdfs:range xsd:decimal .
ak_schema:time_unit a rdf:Property ;
rdfs:comment "The time unit used to measure the start and duration of this life event" ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:comment "The geolocation of a participant at birth" ;
rdfs:range ak_schema:GeolocationOntology .
ak_schema:t_0_event_type a rdf:Property ;
rdfs:comment "The type of the T0 event used to specify the time of this life event" ;
rdfs:range xsd:string .
ak_schema:study_event a rdf:Property ;
rdfs:comment "The study event corresponding to a life event" ;
rdfs:range .
ak_schema:t_0_event a rdf:Property ;
rdfs:comment "The T0 event used to specify the time of this life event" ;
rdfs:range xsd:string .
rdf:type a rdf:Property ;
rdfs:comment "The specific type of a life event" , "The type of observation from which this sequence was drawn, such as direct sequencing or inference from repertoire sequencing data." , "The specific type of an assay" , "Relation between subject and `linked_subjects`, can be genetic or environmental (e.g.exposure)" , "Type of study design" , "The way the sample was obtained, e.g. fine-needle aspirate, organ harvest, peripheral venous puncture" , "Type of similarity calculation between two immune receptor chains" , "The type of this specimen" , "File format for the raw reads or sequences" , "The type of antigen before processing by the immune system." , "Classification of ligand binding to receptor" , "Sequence type (V, D, J, C)" , "Type of inference(s) from which this gene sequence was inferred" , "" , "The specific type of an assessment" , "The top-level receptor type, either Immunoglobulin (Ig) or T Cell Receptor (TCR)." , "Keyword describing the property type and detection method used to measure the property value. The following keywords are recommended, but custom property types are also valid: \"mrna_expression_by_read_count\", \"protein_expression_by_fluorescence_intensity\", \"antigen_bait_binding_by_fluorescence_intensity\", \"protein_expression_by_dna_barcode_count\" and \"antigen_bait_binding_by_dna_barcode_count\"." ;
rdfs:range ak_schema:LifeEventProcessOntology , ak_schema:ObservationTypeEnum , xsd:string , ak_schema:StudyTypeOntology , ak_schema:ChainSimilarityTypeEnum , ak_schema:FileTypeEnum , ak_schema:AntigenTypeEnum , ak_schema:LigandTypeEnum , ak_schema:SequenceTypeEnum , ak_schema:InferenceTypeEnum , ak_schema:SpeciesSubgroupTypeEnum , ak_schema:ReceptorTypeEnum .
ak_schema:start a rdf:Property ;
rdfs:comment "The start time of this life event, relative to the T0 event" ;
rdfs:range xsd:decimal .
ak_schema:RearrangedSequence a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:sequence_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:derivation a rdf:Property ;
rdfs:comment "The class of nucleic acid that was used as primary starting material" ;
rdfs:range ak_schema:DerivationEnum .
ak_schema:deposited_version a rdf:Property ;
rdfs:comment "Version number of the sequence within the repository" ;
rdfs:range xsd:string .
ak_schema:sequence_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:PlannedProcess a rdfs:Class ;
rdfs:comment "A process to realize a plan." ;
rdfs:subClassOf ak_schema:NamedThing .
a rdfs:Class ;
rdfs:subClassOf ak_schema:PlannedProcess .
a rdf:Property ;
rdfs:comment "A series of zero or more specimen processing steps that precede an assay" ;
rdfs:range .
a rdf:Property ;
rdfs:comment "The specimen that was input for an assay" ;
rdfs:range .
ak_schema:target_entity_type a rdf:Property ;
rdfs:comment "The type of the entity being measured" ;
rdfs:range xsd:string .
ak_schema:Acknowledgement a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:acknowledgement_id a rdf:Property ;
rdfs:comment "unique identifier of this Acknowledgement within the file" ;
rdfs:range xsd:string .
ak_schema:individual_full_name a rdf:Property ;
rdfs:comment "Full name of individual" ;
rdfs:range xsd:string .
ak_schema:institution_name a rdf:Property ;
rdfs:comment "Individual's department and institution name" ;
rdfs:range xsd:string .
ak_schema:orcid_id a rdf:Property ;
rdfs:comment "Individual's ORCID identifier" ;
rdfs:range xsd:string .
ak_schema:SequencingRun a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:sequencing_platform a rdf:Property ;
rdfs:comment "Designation of sequencing instrument used" ;
rdfs:range xsd:string .
ak_schema:sequencing_files a rdf:Property ;
rdfs:comment "Set of sequencing files produced by the sequencing run" ;
rdfs:range ak_schema:SequencingData .
ak_schema:sequencing_run_id a rdf:Property ;
rdfs:comment "ID of sequencing run assigned by the sequencing facility" ;
rdfs:range xsd:string .
ak_schema:sequencing_run_date a rdf:Property ;
rdfs:comment "Date of sequencing run" ;
rdfs:range xsd:dateTime .
ak_schema:sequencing_kit a rdf:Property ;
rdfs:comment "Name, manufacturer, order and lot numbers of sequencing kit" ;
rdfs:range xsd:string .
ak_schema:total_reads_passing_qc_filter a rdf:Property ;
rdfs:comment "Number of usable reads for analysis" ;
rdfs:range xsd:integer .
ak_schema:sequencing_facility a rdf:Property ;
rdfs:comment "Name and address of sequencing facility" ;
rdfs:range xsd:string .
ak_schema:DeletedGene a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:label a rdf:Property ;
rdfs:range xsd:string .
ak_schema:germline_set_ref a rdf:Property ;
rdfs:range xsd:string .
ak_schema:phasing a rdf:Property ;
rdfs:comment "Chromosomal phasing indicator. Alleles with the same value are inferred to be located on the same chromosome." ;
rdfs:range xsd:integer .
ak_schema:Subject a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:age_max a rdf:Property ;
rdfs:comment "Upper boundary of age range or equal to age_min for specific age. This field should only be null if age_min is null." ;
rdfs:range xsd:float .
ak_schema:genotype a rdf:Property ;
rdfs:comment "" ;
rdfs:range ak_schema:SubjectGenotype .
ak_schema:diagnosis a rdf:Property ;
rdfs:comment "Diagnosis information for subject" ;
rdfs:range ak_schema:Diagnosis .
ak_schema:strain_name a rdf:Property ;
rdfs:comment "Non-human designation of the strain or breed of animal used" ;
rdfs:range xsd:string .
ak_schema:age_unit a rdf:Property ;
rdfs:comment "Unit of age range" ;
rdfs:range ak_schema:AgeUnitOntology .
ak_schema:sex a rdf:Property ;
rdfs:comment "Biological sex of subject" ;
rdfs:range ak_schema:SexEnum .
ak_schema:ancestry_population a rdf:Property ;
rdfs:comment "Broad geographic origin of ancestry (continent)" ;
rdfs:range xsd:string .
ak_schema:age_min a rdf:Property ;
rdfs:comment "Specific age or lower boundary of age range." ;
rdfs:range xsd:float .
ak_schema:race a rdf:Property ;
rdfs:comment "Racial group of subject (as defined by NIH)" ;
rdfs:range xsd:string .
ak_schema:subject_id a rdf:Property ;
rdfs:comment "Subject ID assigned by submitter, unique within study. If possible, a persistent subject ID linked to an INSDC or similar repository study should be used." ;
rdfs:range xsd:string .
ak_schema:age_event a rdf:Property ;
rdfs:comment "Event in the study schedule to which `Age` refers. For NCBI BioSample this MUST be `sampling`. For other implementations submitters need to be aware that there is currently no mechanism to encode to potential delta between `Age event` and `Sample collection time`, hence the chosen events should be in temporal proximity." ;
rdfs:range xsd:string .
ak_schema:synthetic a rdf:Property ;
rdfs:comment "TRUE for libraries in which the diversity has been synthetically generated (e.g. phage display)" ;
rdfs:range xsd:boolean .
ak_schema:species a rdf:Property ;
rdfs:comment "Binomial designation of subject's species" ;
rdfs:range ak_schema:SpeciesOntology .
ak_schema:ethnicity a rdf:Property ;
rdfs:comment "Ethnic group of subject (defined as cultural/language-based membership)" ;
rdfs:range xsd:string .
ak_schema:linked_subjects a rdf:Property ;
rdfs:comment "Subject ID to which `Relation type` refers" ;
rdfs:range xsd:string .
ak_schema:Study a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:lab_address a rdf:Property ;
rdfs:range xsd:string .
ak_schema:pub_ids a rdf:Property ;
rdfs:range xsd:string .
ak_schema:collected_by a rdf:Property ;
rdfs:comment "Full contact information of the data collector, i.e. the person who is legally responsible for data collection and release. This should include an e-mail address and a persistent identifier such as an ORCID ID." ;
rdfs:range xsd:string .
ak_schema:study_title a rdf:Property ;
rdfs:comment "Descriptive study title" ;
rdfs:range xsd:string .
ak_schema:submitted_by a rdf:Property ;
rdfs:comment "Full contact information of the data depositor, i.e., the person submitting the data to a repository. This should include an e-mail address and a persistent identifier such as an ORCID ID. This is supposed to be a short-lived and technical role until the submission is relased." ;
rdfs:range xsd:string .
ak_schema:adc_update_date a rdf:Property ;
rdfs:comment "Date the study data was updated in the AIRR Data Commons." ;
rdfs:range xsd:dateTime .
ak_schema:keywords_study a rdf:Property ;
rdfs:comment "Keywords describing properties of one or more data sets in a study. \"contains_schema\" keywords indicate that the study contains data objects from the AIRR Schema of that type (Rearrangement, Clone, Cell, Receptor) while the other keywords indicate that the study design considers the type of data indicated (e.g. it is possible to have a study that \"contains_paired_chain\" but does not \"contains_schema_cell\")." ;
rdfs:range ak_schema:KeywordsStudyEnum .
ak_schema:lab_name a rdf:Property ;
rdfs:range xsd:string .
ak_schema:grants a rdf:Property ;
rdfs:comment "Funding agencies and grant numbers" ;
rdfs:range xsd:string .
ak_schema:study_id a rdf:Property ;
rdfs:comment "Unique ID assigned by study registry such as one of the International Nucleotide Sequence Database Collaboration (INSDC) repositories." ;
rdfs:range xsd:string .
ak_schema:adc_publish_date a rdf:Property ;
rdfs:comment "Date the study was first published in the AIRR Data Commons." ;
rdfs:range xsd:dateTime .
ak_schema:study_description a rdf:Property ;
rdfs:comment "Generic study description" ;
rdfs:range xsd:string .
ak_schema:study_contact a rdf:Property ;
rdfs:comment "Full contact information of the contact persons for this study This should include an e-mail address and a persistent identifier such as an ORCID ID." ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
a rdf:Property ;
rdfs:comment "The assessment that a dataset is about" , "The investigations that a reference or conclusion are about" , "The type of organism that the conclusion is about" ;
rdfs:range , , ak_schema:SpeciesOntology .
ak_schema:SampleProcessing a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:anatomic_site a rdf:Property ;
rdfs:comment "The anatomic location of the tissue, e.g. Inguinal, femur" ;
rdfs:range xsd:string .
ak_schema:cell_storage a rdf:Property ;
rdfs:comment "TRUE if cells were cryo-preserved between isolation and further processing" ;
rdfs:range xsd:boolean .
ak_schema:library_generation_method a rdf:Property ;
rdfs:comment "Generic type of library generation" ;
rdfs:range ak_schema:LibraryGenerationMethodEnum .
ak_schema:cell_isolation a rdf:Property ;
rdfs:comment "Description of the procedure used for marker-based isolation or enrich cells" ;
rdfs:range xsd:string .
ak_schema:library_generation_kit_version a rdf:Property ;
rdfs:comment "When using a library generation protocol from a commercial provider, provide the protocol version number" ;
rdfs:range xsd:string .
ak_schema:cell_subset a rdf:Property ;
rdfs:comment "Commonly-used designation of isolated cell population" ;
rdfs:range ak_schema:CellSubsetOntology .
ak_schema:cell_species a rdf:Property ;
rdfs:comment "Binomial designation of the species from which the analyzed cells originate. Typically, this value should be identical to `species`, in which case it SHOULD NOT be set explicitly. However, there are valid experimental setups in which the two might differ, e.g., chimeric animal models. If set, this key will overwrite the `species` information for all lower layers of the schema." ;
rdfs:range ak_schema:CellSpeciesOntology .
ak_schema:sample_id a rdf:Property ;
rdfs:comment "Sample ID assigned by submitter, unique within study. If possible, a persistent sample ID linked to INSDC or similar repository study should be used." ;
rdfs:range xsd:string .
ak_schema:library_generation_protocol a rdf:Property ;
rdfs:comment "Description of processes applied to substrate to obtain a library that is ready for sequencing" ;
rdfs:range xsd:string .
ak_schema:tissue_processing a rdf:Property ;
rdfs:comment "Enzymatic digestion and/or physical methods used to isolate cells from sample" ;
rdfs:range xsd:string .
ak_schema:cells_per_reaction a rdf:Property ;
rdfs:comment "Number of cells for each biological replicate" ;
rdfs:range xsd:integer .
ak_schema:sample_processing_id a rdf:Property ;
rdfs:range xsd:string .
ak_schema:cell_processing_protocol a rdf:Property ;
rdfs:comment "Description of the methods applied to the sample including cell preparation/ isolation/enrichment and nucleic acid extraction. This should closely mirror the Materials and methods section in the manuscript." ;
rdfs:range xsd:string .
ak_schema:disease_state_sample a rdf:Property ;
rdfs:comment "Histopathologic evaluation of the sample" ;
rdfs:range xsd:string .
ak_schema:single_cell a rdf:Property ;
rdfs:comment "TRUE if single cells were isolated into separate compartments" ;
rdfs:range xsd:boolean .
ak_schema:complete_sequences a rdf:Property ;
rdfs:comment "To be considered `complete`, the procedure used for library construction MUST generate sequences that 1) include the first V gene codon that encodes the mature polypeptide chain (i.e. after the leader sequence) and 2) include the last complete codon of the J gene (i.e. 1 bp 5' of the J->C splice site) and 3) provide sequence information for all positions between 1) and 2). To be considered `complete & untemplated`, the sections of the sequences defined in points 1) to 3) of the previous sentence MUST be untemplated, i.e. MUST NOT overlap with the primers used in library preparation. `mixed` should only be used if the procedure used for library construction will likely produce multiple categories of sequences in the given experiment. It SHOULD NOT be used as a replacement of a NULL value." ;
rdfs:range ak_schema:CompleteSequencesEnum .
ak_schema:template_quality a rdf:Property ;
rdfs:comment "Description and results of the quality control performed on the template material" ;
rdfs:range xsd:string .
ak_schema:template_amount_unit a rdf:Property ;
rdfs:comment "Unit of template amount" ;
rdfs:range ak_schema:TemplateAmountUnitOntology .
ak_schema:pcr_target a rdf:Property ;
rdfs:comment "If a PCR step was performed that specifically targets the IG/TR loci, the target and primer locations need to be provided here. This field holds an array of PCRTarget objects, so that multiplex PCR setups amplifying multiple loci at the same time can be annotated using one record per locus. PCR setups not targeting any specific locus must not annotate this field but select the appropriate library_generation_method instead." ;
rdfs:range ak_schema:PcrTarget .
ak_schema:tissue a rdf:Property ;
rdfs:comment "The actual tissue sampled, e.g. lymph node, liver, peripheral blood" ;
rdfs:range ak_schema:TissueOntology .
ak_schema:cell_number a rdf:Property ;
rdfs:comment "Total number of cells that went into the experiment" ;
rdfs:range xsd:integer .
ak_schema:collection_time_point_relative a rdf:Property ;
rdfs:comment "Time point at which sample was taken, relative to `Collection time event`" ;
rdfs:range xsd:float .
ak_schema:physical_linkage a rdf:Property ;
rdfs:comment "In case an experimental setup is used that physically links nucleic acids derived from distinct `Rearrangements` before library preparation, this field describes the mode of that linkage. All `hetero_*` terms indicate that in case of paired-read sequencing, the two reads should be expected to map to distinct IG/TR loci. `*_head-head` refers to techniques that link the 5' ends of transcripts in a single-cell context. `*_tail-head` refers to techniques that link the 3' end of one transcript to the 5' end of another one in a single-cell context. This term does not provide any information whether a continuous reading-frame between the two is generated. `*_prelinked` refers to constructs in which the linkage was already present on the DNA level (e.g. scFv)." ;
rdfs:range ak_schema:PhysicalLinkageEnum .
ak_schema:collection_time_point_reference a rdf:Property ;
rdfs:comment "Event in the study schedule to which `Sample collection time` relates to" ;
rdfs:range xsd:string .
ak_schema:template_amount a rdf:Property ;
rdfs:comment "Amount of template that went into the process" ;
rdfs:range xsd:float .
ak_schema:template_class a rdf:Property ;
rdfs:comment "The class of nucleic acid that was used as primary starting material for the following procedures" ;
rdfs:range ak_schema:TemplateClassEnum .
ak_schema:cell_quality a rdf:Property ;
rdfs:comment "Relative amount of viable cells after preparation and (if applicable) thawing" ;
rdfs:range xsd:string .
ak_schema:biomaterial_provider a rdf:Property ;
rdfs:comment "Name and address of the entity providing the sample" ;
rdfs:range xsd:string .
ak_schema:collection_time_point_relative_unit a rdf:Property ;
rdfs:comment "Unit of Sample collection time" ;
rdfs:range ak_schema:CollectionTimePointRelativeUnitOntology .
ak_schema:cell_phenotype a rdf:Property ;
rdfs:comment "List of cellular markers and their expression levels used to isolate the cell population" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf ak_schema:PlannedProcess .
ak_schema:NucleicAcidProcessing a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:ChainSimilarity a rdfs:Class ;
rdfs:subClassOf .
ak_schema:chain_domain a rdf:Property ;
rdfs:comment "Immune receptor chain element in binary relation domain" ;
rdfs:range ak_schema:Chain .
ak_schema:chain_codomain a rdf:Property ;
rdfs:comment "Immune receptor chain element in binary relation codomain" ;
rdfs:range ak_schema:Chain .
ak_schema:GenotypeSet a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:receptor_genotype_set_id a rdf:Property ;
rdfs:comment "A unique identifier for this Receptor Genotype Set, typically generated by the repository hosting the schema, for example from the underlying ID of the database record." ;
rdfs:range xsd:string .
ak_schema:genotype_class_list a rdf:Property ;
rdfs:comment "List of Genotypes included in this Receptor Genotype Set." ;
rdfs:range ak_schema:Genotype .
ak_schema:AirrStandardsV1P5 a rdfs:Class ;
rdfs:comment "An object directly converted from AIRR schema version 1.5." .
ak_schema:RepertoireGroupDetail a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:repertoire_description a rdf:Property ;
rdfs:range xsd:string .
ak_schema:time_point a rdf:Property ;
rdfs:comment "Time point designation for this repertoire within the group" ;
rdfs:range ak_schema:TimePoint .
a rdfs:Class ;
rdfs:subClassOf .
ak_schema:tcell_receptors a rdf:Property ;
rdfs:comment "The T cell receptors being measured" ;
rdfs:range .
ak_schema:tcell_chains a rdf:Property ;
rdfs:comment "The T cell receptor chains being measured" ;
rdfs:range ak_schema:Chain .
ak_schema:epitope a rdf:Property ;
rdfs:comment "The epitope being measured" ;
rdfs:range ak_schema:Epitope .
ak_schema:unit a rdf:Property ;
rdfs:comment "The measurement result value unit" ;
rdfs:range xsd:string .
ak_schema:value a rdf:Property ;
rdfs:comment "The measurement result value" ;
rdfs:range xsd:string .
ak_schema:Tree a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:tree_id a rdf:Property ;
rdfs:comment "Identifier for the tree." ;
rdfs:range xsd:string .
ak_schema:newick a rdf:Property ;
rdfs:comment "Newick string of the tree edges." ;
rdfs:range xsd:string .
ak_schema:nodes a rdf:Property ;
rdfs:comment "Dictionary of nodes in the tree, keyed by sequence_id string" ;
rdfs:range ak_schema:Node .
a rdfs:Class ;
rdfs:subClassOf , ak_schema:NucleicAcidProcessing .
ak_schema:Node a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:sequence_alignment a rdf:Property ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf ak_schema:AkObject .
ak_schema:AirrStandardsV2P0 a rdfs:Class ;
rdfs:comment "An object directly converted from AIRR schema version 2.0." .
a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
ak_schema:life_event a rdf:Property ;
rdfs:comment "The life event corresponding to an immune exposure" ;
rdfs:range .
ak_schema:process a rdf:Property ;
rdfs:comment "The type of specimen collection process that resulted in this specimen" ;
rdfs:range xsd:string .
ak_schema:Repertoire a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:data_processing a rdf:Property ;
rdfs:comment "List of Data Processing objects" ;
rdfs:range ak_schema:DataProcessing .
ak_schema:subject a rdf:Property ;
rdfs:comment "Subject object" ;
rdfs:range ak_schema:Subject .
ak_schema:sample a rdf:Property ;
rdfs:comment "List of Sample Processing objects" ;
rdfs:range ak_schema:SampleProcessing .
ak_schema:repertoire_name a rdf:Property ;
rdfs:comment "Short generic display name for the repertoire" ;
rdfs:range xsd:string .
ak_schema:study a rdf:Property ;
rdfs:comment "Study object" ;
rdfs:range ak_schema:Study .
a rdfs:Class ;
rdfs:subClassOf .
ak_schema:tra_chain a rdf:Property ;
rdfs:comment "T cell receptor alpha chain" ;
rdfs:range ak_schema:Chain .
ak_schema:trb_chain a rdf:Property ;
rdfs:comment "T cell receptor beta chain" ;
rdfs:range ak_schema:Chain .
ak_schema:SequencingData a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:read_length a rdf:Property ;
rdfs:comment "Read length in bases for the first file in paired-read sequencing" ;
rdfs:range xsd:integer .
ak_schema:read_direction a rdf:Property ;
rdfs:comment "Read direction for the raw reads or sequences. The first file in paired-read sequencing." ;
rdfs:range ak_schema:ReadDirectionEnum .
ak_schema:paired_read_direction a rdf:Property ;
rdfs:comment "Read direction for the second file in paired-read sequencing" ;
rdfs:range ak_schema:PairedReadDirectionEnum .
ak_schema:sequencing_data_id a rdf:Property ;
rdfs:comment "Persistent identifier of raw data stored in an archive (e.g. INSDC run ID). Data archive should be identified in the CURIE prefix." ;
rdfs:range xsd:string .
ak_schema:paired_filename a rdf:Property ;
rdfs:comment "File name for the second file in paired-read sequencing" ;
rdfs:range xsd:string .
ak_schema:paired_read_length a rdf:Property ;
rdfs:comment "Read length in bases for the second file in paired-read sequencing" ;
rdfs:range xsd:integer .
ak_schema:index_length a rdf:Property ;
rdfs:comment "Read length in bases for the index file" ;
rdfs:range xsd:integer .
ak_schema:filename a rdf:Property ;
rdfs:comment "File name for the raw reads or sequences. The first file in paired-read sequencing." ;
rdfs:range xsd:string .
ak_schema:index_filename a rdf:Property ;
rdfs:comment "File name for the index file" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf ak_schema:AkObject .
ak_schema:ForeignObject a rdfs:Class ;
rdfs:comment "An object held outside of the AK." .
ak_schema:ReceptorReactivity a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:reactivity_value a rdf:Property ;
rdfs:comment "The absolute (processed) value of the measurement" ;
rdfs:range xsd:float .
ak_schema:antigen_source_species a rdf:Property ;
rdfs:comment "The species from which the antigen was isolated" ;
rdfs:range ak_schema:AntigenSourceSpeciesOntology .
ak_schema:mhc_class a rdf:Property ;
rdfs:range ak_schema:MhcClassEnum .
ak_schema:antigen a rdf:Property ;
rdfs:comment "The substance against which the receptor was tested. This can be any substance that stimulates an adaptive immune response in the host, either through antibody production or by T cell activation after presentation via an MHC molecule." ;
rdfs:range ak_schema:AntigenOntology .
ak_schema:mhc_allele_1 a rdf:Property ;
rdfs:comment "Allele designation of the MHC alpha chain" ;
rdfs:range xsd:string .
ak_schema:mhc_gene_1 a rdf:Property ;
rdfs:comment "The MHC gene to which the mhc_allele_1 belongs" ;
rdfs:range ak_schema:MhcGene1Ontology .
ak_schema:mhc_allele_2 a rdf:Property ;
rdfs:comment "Allele designation of the MHC class II beta chain or the invariant beta2-microglobin chain" ;
rdfs:range xsd:string .
ak_schema:reactivity_method a rdf:Property ;
rdfs:comment "The methodology used to assess expression (assay implemented in experiment)" ;
rdfs:range ak_schema:ReactivityMethodEnum .
ak_schema:mhc_gene_2 a rdf:Property ;
rdfs:comment "The MHC gene to which the mhc_allele_2 belongs" ;
rdfs:range ak_schema:MhcGene2Ontology .
ak_schema:peptide_end a rdf:Property ;
rdfs:comment "End position of the peptide within the reference protein sequence" ;
rdfs:range xsd:integer .
ak_schema:reactivity_unit a rdf:Property ;
rdfs:comment "The unit of the measurement" ;
rdfs:range xsd:string .
ak_schema:reactivity_readout a rdf:Property ;
rdfs:comment "Reactivity measurement read-out" ;
rdfs:range ak_schema:ReactivityReadoutEnum .
ak_schema:peptide_start a rdf:Property ;
rdfs:comment "Start position of the peptide within the reference protein sequence" ;
rdfs:range xsd:integer .
ak_schema:AlleleDescription a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:allele_description_ref a rdf:Property ;
rdfs:comment "Unique reference to the allele description, in standardized form (Repo:Label:Version)" ;
rdfs:range xsd:string .
ak_schema:leader_1_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of L-PART1 (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:release_description a rdf:Property ;
rdfs:comment "Brief descriptive notes of the reason for this release and the changes embodied" ;
rdfs:range xsd:string .
ak_schema:rearranged_support a rdf:Property ;
rdfs:comment "" ;
rdfs:range ak_schema:RearrangedSequence .
ak_schema:j_rs_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of J recombination site (J-genes only)." ;
rdfs:range xsd:integer .
ak_schema:release_version a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:v_rs_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of the V recombination site (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:j_donor_splice a rdf:Property ;
rdfs:comment "Co-ordinate in the sequence field of the final 3' nucleotide of the J-REGION (J-genes only)." ;
rdfs:range xsd:integer .
ak_schema:aliases a rdf:Property ;
rdfs:comment "Alternative names for this sequence" ;
rdfs:range xsd:string .
ak_schema:d_rs_3_prime_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of the 3 prime D recombination site (D-genes only)." ;
rdfs:range xsd:integer .
ak_schema:utr_5_prime_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of the 5 prime UTR (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:locus a rdf:Property ;
rdfs:range ak_schema:LocusEnum .
ak_schema:curational_tags a rdf:Property ;
rdfs:comment "Controlled-vocabulary tags applied to this description" ;
rdfs:range ak_schema:CurationalTagsEnum .
ak_schema:leader_1_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of L-PART1 (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:leader_2_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of L-PART2 (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:subgroup_designation a rdf:Property ;
rdfs:comment "Identifier of the gene subgroup or clade, as (and if) defined" ;
rdfs:range xsd:string .
ak_schema:leader_2_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of L-PART2 (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:allele_description_id a rdf:Property ;
rdfs:comment "Unique identifier of this AlleleDescription within the file. Typically, generated by the repository hosting the record." ;
rdfs:range xsd:string .
ak_schema:j_rs_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of J recombination site (J-genes only)." ;
rdfs:range xsd:integer .
ak_schema:maintainer a rdf:Property ;
rdfs:comment "Maintainer of this sequence record" ;
rdfs:range xsd:string .
ak_schema:gene_end a rdf:Property ;
rdfs:comment "Co-ordinate in the sequence field of the last gene-coding nucleotide in the coding_sequence field." ;
rdfs:range xsd:integer .
ak_schema:allele_similarity_cluster_member_id a rdf:Property ;
rdfs:comment "Membership ID of the allele within the similarity cluster, if a cluster is designated" ;
rdfs:range xsd:string .
ak_schema:coding_sequence a rdf:Property ;
rdfs:comment "Nucleotide sequence of the core coding region, such as the coding region of a D-, J- or C- gene or the coding region of a V-gene excluding the leader." ;
rdfs:range xsd:string .
ak_schema:utr_5_prime_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of the 5 prime UTR (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:unrearranged_support a rdf:Property ;
rdfs:comment "" ;
rdfs:range ak_schema:UnrearrangedSequence .
ak_schema:d_rs_5_prime_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of the 5 prime D recombination site (D-genes only)." ;
rdfs:range xsd:integer .
ak_schema:chromosome a rdf:Property ;
rdfs:comment "chromosome on which the gene is located" ;
rdfs:range xsd:integer .
ak_schema:allele_similarity_cluster_designation a rdf:Property ;
rdfs:comment "ID of the similarity cluster used in this germline set, if designated" ;
rdfs:range xsd:string .
ak_schema:v_gene_delineations a rdf:Property ;
rdfs:comment "" ;
rdfs:range ak_schema:SequenceDelineationV .
ak_schema:paralogs a rdf:Property ;
rdfs:comment "Gene symbols of any paralogs" ;
rdfs:range xsd:string .
ak_schema:v_rs_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of the V recombination site (V-genes only)." ;
rdfs:range xsd:integer .
ak_schema:d_rs_5_prime_end a rdf:Property ;
rdfs:comment "End co-ordinate in the sequence field of 5 the prime D recombination site (D-genes only)." ;
rdfs:range xsd:integer .
ak_schema:gene_start a rdf:Property ;
rdfs:comment "Co-ordinate in the sequence field of the first nucleotide in the coding_sequence field." ;
rdfs:range xsd:integer .
ak_schema:j_cdr_3_end a rdf:Property ;
rdfs:comment "In the case of a J-gene, the co-ordinate in the sequence field of the first nucelotide of the conserved PHE or TRP (IMGT codon position 118)." ;
rdfs:range xsd:integer .
ak_schema:species_subgroup a rdf:Property ;
rdfs:comment "Race, strain or other species subgroup to which this subject belongs" ;
rdfs:range xsd:string .
ak_schema:d_rs_3_prime_start a rdf:Property ;
rdfs:comment "Start co-ordinate in the sequence field of the 3 prime D recombination site (D-genes only)." ;
rdfs:range xsd:integer .
ak_schema:status a rdf:Property ;
rdfs:comment "Status of record, assumed active if the field is not present" ;
rdfs:range ak_schema:StatusEnum .
ak_schema:acknowledgements a rdf:Property ;
rdfs:range ak_schema:Acknowledgement .
ak_schema:gene_designation a rdf:Property ;
rdfs:comment "Gene number or other identifier, as (and if) defined" ;
rdfs:range xsd:string .
ak_schema:j_codon_frame a rdf:Property ;
rdfs:comment "Codon position of the first nucleotide in the 'coding_sequence' field. Mandatory for J genes. Not used for V or D genes. '1' means the sequence is in-frame, '2' means that the first bp is missing from the first codon, and '3' means that the first 2 bp are missing." ;
rdfs:range ak_schema:JCodonFrameEnum .
ak_schema:functional a rdf:Property ;
rdfs:comment "True if the gene is functional, false if it is a pseudogene" ;
rdfs:range xsd:boolean .
ak_schema:PeptidicEpitope a rdfs:Class ;
rdfs:subClassOf ak_schema:Epitope .
ak_schema:sequence_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the query nucleotide sequence." ;
rdfs:range xsd:string .
ak_schema:source_protein a rdf:Property ;
rdfs:comment "The protein that this epitope comes from" ;
rdfs:range xsd:string .
ak_schema:source_organism a rdf:Property ;
rdfs:comment "The organism that the source protein comes from" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
ak_schema:study_arms a rdf:Property ;
rdfs:comment "The study arms that are relevant for a study event" ;
rdfs:range .
a rdfs:Class ;
rdfs:subClassOf ak_schema:PlannedProcess .
a rdfs:Class ;
rdfs:subClassOf ak_schema:PlannedProcess .
ak_schema:Chain a rdfs:Class ;
rdfs:subClassOf ak_schema:AkObject .
ak_schema:junction_aa_vj_allele_hash a rdf:Property ;
rdfs:range xsd:string .
ak_schema:cdr_3_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:complete_vdj a rdf:Property ;
rdfs:comment "Complete VDJ flag." ;
rdfs:range xsd:boolean .
ak_schema:junction_aa_vj_gene_hash a rdf:Property ;
rdfs:range xsd:string .
ak_schema:c_call a rdf:Property ;
rdfs:comment "Constant region gene with allele. If referring to a known reference sequence in a database the relevant gene/allele nomenclature should be followed (e.g., IGHG1*01 if using IMGT/GENE-DB)." ;
rdfs:range xsd:string .
ak_schema:cdr_2_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:cdr_1_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the cdr1 field." ;
rdfs:range xsd:string .
ak_schema:cdr_2_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the cdr2 field." ;
rdfs:range xsd:string .
ak_schema:chain_type a rdf:Property ;
rdfs:comment "Gene locus (chain type)." ;
rdfs:range ak_schema:ChainTypeEnum .
ak_schema:cdr_2_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:cdr_1_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:cdr_3_end a rdf:Property ;
rdfs:comment "CDR3 end position in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:aa_hash a rdf:Property ;
rdfs:range xsd:string .
ak_schema:cdr_1_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:cdr_3_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the cdr3 field." ;
rdfs:range xsd:string .
ak_schema:Sample a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:Cell a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:expression_raw_doi a rdf:Property ;
rdfs:comment "DOI of raw data set containing the current event" ;
rdfs:range xsd:string .
ak_schema:expression_study_method a rdf:Property ;
rdfs:comment "Keyword describing the methodology used to assess expression. This values for this field MUST come from a controlled vocabulary." ;
rdfs:range ak_schema:ExpressionStudyMethodEnum .
ak_schema:virtual_pairing a rdf:Property ;
rdfs:comment "boolean to indicate if pairing was inferred." ;
rdfs:range xsd:boolean .
ak_schema:rearrangements a rdf:Property ;
rdfs:comment "Array of sequence identifiers defined for the Rearrangement object" ;
rdfs:range xsd:string .
ak_schema:expression_index a rdf:Property ;
rdfs:comment "Index addressing the current event within the raw data set." ;
rdfs:range xsd:string .
ak_schema:cell_id a rdf:Property ;
rdfs:range xsd:string .
ak_schema:receptors a rdf:Property ;
rdfs:comment "Array of receptor identifiers defined for the Receptor object" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf ak_schema:PlannedProcess .
a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
ak_schema:data_location_type a rdf:Property ;
rdfs:comment "The type of location where data was found, e.g. figure, table" ;
rdfs:range xsd:string .
ak_schema:result a rdf:Property ;
rdfs:comment "The content of the conclusion" ;
rdfs:range xsd:string .
ak_schema:data_location_value a rdf:Property ;
rdfs:comment "An identifier for the location of the data, e.g. figure 2" ;
rdfs:range xsd:string .
ak_schema:datasets a rdf:Property ;
rdfs:comment "The datasets that support a conclusion" ;
rdfs:range .
ak_schema:experiment_type a rdf:Property ;
rdfs:comment "The type of experiment that supports the conclusion" ;
rdfs:range xsd:string .
ak_schema:Epitope a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
ak_schema:BCellReceptor a rdfs:Class ;
rdfs:subClassOf ak_schema:AkObject .
ak_schema:igh_chain a rdf:Property ;
rdfs:comment "IG heavy chain" ;
rdfs:range ak_schema:Chain .
ak_schema:igk_chain a rdf:Property ;
rdfs:comment "IG kappa light chain" ;
rdfs:range ak_schema:Chain .
ak_schema:igl_chain a rdf:Property ;
rdfs:comment "IG lambda light chain" ;
rdfs:range ak_schema:Chain .
a rdfs:Class ;
rdfs:comment "A document about an investigation." ;
rdfs:subClassOf ak_schema:ForeignObject .
ak_schema:journal a rdf:Property ;
rdfs:comment "The journal in which a reference was published" ;
rdfs:range xsd:string .
ak_schema:pages a rdf:Property ;
rdfs:comment "The pages of the issue of the journal in which a reference was published" ;
rdfs:range xsd:string .
ak_schema:year a rdf:Property ;
rdfs:comment "The year of the issue of the journal in which a reference was published" ;
rdfs:range xsd:integer .
a rdf:Property ;
rdfs:comment "The issue of the journal in which a reference was published" ;
rdfs:range xsd:string .
a rdf:Property ;
rdfs:comment "The authors of a reference" ;
rdfs:range xsd:string .
ak_schema:month a rdf:Property ;
rdfs:comment "The month of the issue of the journal in which a reference was published" ;
rdfs:range xsd:string .
ak_schema:AirrKnowledgeCommons a rdfs:Class ;
rdfs:comment "A container for instances of multiple classes." .
ak_schema:participants a rdf:Property ;
rdfs:range .
ak_schema:chains a rdf:Property ;
rdfs:range ak_schema:Chain .
ak_schema:references a rdf:Property ;
rdfs:range .
ak_schema:epitopes a rdf:Property ;
rdfs:range ak_schema:Epitope .
ak_schema:investigations a rdf:Property ;
rdfs:range .
ak_schema:specimens a rdf:Property ;
rdfs:range .
ak_schema:specimen_processings a rdf:Property ;
rdfs:range .
ak_schema:gd_tcell_receptors a rdf:Property ;
rdfs:range .
ak_schema:specimen_collections a rdf:Property ;
rdfs:range .
ak_schema:bcell_receptors a rdf:Property ;
rdfs:range ak_schema:BCellReceptor .
ak_schema:assessments a rdf:Property ;
rdfs:range .
ak_schema:life_events a rdf:Property ;
rdfs:range .
ak_schema:immune_exposures a rdf:Property ;
rdfs:range .
ak_schema:ab_tcell_receptors a rdf:Property ;
rdfs:range .
ak_schema:study_events a rdf:Property ;
rdfs:range .
a rdfs:Class ;
rdfs:subClassOf .
ak_schema:DocumentedAllele a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
a rdfs:Class ;
rdfs:subClassOf ak_schema:NamedThing .
ak_schema:Genotype a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:receptor_genotype_id a rdf:Property ;
rdfs:comment "A unique identifier within the file for this Receptor Genotype, typically generated by the repository hosting the schema, for example from the underlying ID of the database record." ;
rdfs:range xsd:string .
ak_schema:undocumented_alleles a rdf:Property ;
rdfs:comment "List of alleles inferred to be present and not documented in an identified GermlineSet" ;
rdfs:range ak_schema:UndocumentedAllele .
ak_schema:deleted_genes a rdf:Property ;
rdfs:comment "Array of genes identified as being deleted in this genotype" ;
rdfs:range ak_schema:DeletedGene .
ak_schema:inference_process a rdf:Property ;
rdfs:comment "Information on how the genotype was acquired. Controlled vocabulary." ;
rdfs:range ak_schema:InferenceProcessEnum .
ak_schema:documented_alleles a rdf:Property ;
rdfs:comment "List of alleles documented in reference set(s)" ;
rdfs:range ak_schema:DocumentedAllele .
ak_schema:Alignment a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:support a rdf:Property ;
rdfs:comment "Alignment E-value, p-value, likelihood, probability or other similar measure of support for the gene assignment as defined by the alignment tool." ;
rdfs:range xsd:float .
ak_schema:rev_comp a rdf:Property ;
rdfs:range xsd:boolean .
ak_schema:germline_start a rdf:Property ;
rdfs:comment "Alignment start position in the reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:rank a rdf:Property ;
rdfs:comment "Alignment rank." ;
rdfs:range xsd:integer .
ak_schema:score a rdf:Property ;
rdfs:comment "Alignment score." ;
rdfs:range xsd:float .
ak_schema:germline_end a rdf:Property ;
rdfs:comment "Alignment end position in the reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:segment a rdf:Property ;
rdfs:comment "The segment for this alignment. One of V, D, J or C." ;
rdfs:range xsd:string .
ak_schema:identity a rdf:Property ;
rdfs:comment "Alignment fractional identity." ;
rdfs:range xsd:float .
ak_schema:cigar a rdf:Property ;
rdfs:comment "Alignment CIGAR string." ;
rdfs:range xsd:string .
ak_schema:call a rdf:Property ;
rdfs:comment "Gene assignment with allele." ;
rdfs:range xsd:string .
ak_schema:PlanSpecification a rdfs:Class ;
rdfs:comment "A plan with specified actions to meet some objectives." ;
rdfs:subClassOf ak_schema:NamedThing .
a rdfs:Class ;
rdfs:comment "A population of participants of an investigation." ;
rdfs:subClassOf ak_schema:NamedThing .
a rdf:Property ;
rdfs:comment "An investigation in which the study arm participates" ;
rdfs:range .
ak_schema:AirrStandards a rdfs:Class ;
rdfs:comment "An object directly converted from the AIRR schema." .
ak_schema:MhcGenotypeSet a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:mhc_genotype_set_id a rdf:Property ;
rdfs:comment "A unique identifier for this MHCGenotypeSet" ;
rdfs:range xsd:string .
ak_schema:mhc_genotype_list a rdf:Property ;
rdfs:comment "List of MHCGenotypes included in this set" ;
rdfs:range ak_schema:MhcGenotype .
ak_schema:CommunicativeModel a rdfs:Class ;
rdfs:subClassOf .
ak_schema:Diagnosis a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:disease_length a rdf:Property ;
rdfs:comment "Time duration between initial diagnosis and current intervention" ;
rdfs:range xsd:string .
ak_schema:disease_stage a rdf:Property ;
rdfs:comment "Stage of disease at current intervention" ;
rdfs:range xsd:string .
ak_schema:immunogen a rdf:Property ;
rdfs:comment "Antigen, vaccine or drug applied to subject at this intervention" ;
rdfs:range xsd:string .
ak_schema:medical_history a rdf:Property ;
rdfs:comment "Medical history of subject that is relevant to assess the course of disease and/or treatment" ;
rdfs:range xsd:string .
ak_schema:disease_diagnosis a rdf:Property ;
rdfs:comment "Diagnosis of subject" ;
rdfs:range ak_schema:DiseaseDiagnosisOntology .
ak_schema:prior_therapies a rdf:Property ;
rdfs:comment "List of all relevant previous therapies applied to subject for treatment of `Diagnosis`" ;
rdfs:range xsd:string .
ak_schema:intervention a rdf:Property ;
rdfs:comment "Description of intervention" ;
rdfs:range xsd:string .
ak_schema:study_group_description a rdf:Property ;
rdfs:comment "Designation of study arm to which the subject is assigned to" ;
rdfs:range xsd:string .
ak_schema:MhcGenotype a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:mhc_genotype_id a rdf:Property ;
rdfs:comment "A unique identifier for this MHCGenotype, assumed to be unique in the context of the study" ;
rdfs:range xsd:string .
ak_schema:mhc_alleles a rdf:Property ;
rdfs:comment "List of MHC alleles of the indicated mhc_class identified in an individual" ;
rdfs:range ak_schema:MhcAllele .
ak_schema:mhc_genotyping_method a rdf:Property ;
rdfs:comment "Information on how the genotype was determined. The content of this field should come from a list of recommended terms provided in the AIRR Schema documentation." ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf , ak_schema:SequencingRun .
ak_schema:Receptor a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:receptor_variable_domain_2_locus a rdf:Property ;
rdfs:comment "Locus from which the variable domain in receptor_variable_domain_2_aa originates" ;
rdfs:range ak_schema:ReceptorVariableDomain2LocusEnum .
ak_schema:receptor_variable_domain_1_aa a rdf:Property ;
rdfs:comment "Complete amino acid sequence of the mature variable domain of the Ig heavy, TCR beta or TCR delta chain. The mature variable domain is defined as encompassing all AA from and including first AA after the the signal peptide to and including the last AA that is completely encoded by the J gene." ;
rdfs:range xsd:string .
ak_schema:receptor_hash a rdf:Property ;
rdfs:comment "The SHA256 hash of the receptor amino acid sequence, calculated on the concatenated ``receptor_variable_domain_*_aa`` sequences and represented as base16-encoded string." ;
rdfs:range xsd:string .
ak_schema:receptor_variable_domain_2_aa a rdf:Property ;
rdfs:comment "Complete amino acid sequence of the mature variable domain of the Ig light, TCR alpha or TCR gamma chain. The mature variable domain is defined as encompassing all AA from and including first AA after the the signal peptide to and including the last AA that is completely encoded by the J gene." ;
rdfs:range xsd:string .
ak_schema:receptor_id a rdf:Property ;
rdfs:comment "ID of the current Receptor object, unique within the local repository." ;
rdfs:range xsd:string .
ak_schema:reactivity_measurements a rdf:Property ;
rdfs:comment "Records of reactivity measurement" ;
rdfs:range ak_schema:ReceptorReactivity .
ak_schema:receptor_ref a rdf:Property ;
rdfs:comment "Array of receptor identifiers defined for the Receptor object" ;
rdfs:range xsd:string .
ak_schema:receptor_variable_domain_1_locus a rdf:Property ;
rdfs:comment "Locus from which the variable domain in receptor_variable_domain_1_aa originates" ;
rdfs:range ak_schema:ReceptorVariableDomain1LocusEnum .
ak_schema:GermlineSet a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:germline_set_name a rdf:Property ;
rdfs:comment "descriptive name of this germline set" ;
rdfs:range xsd:string .
ak_schema:author a rdf:Property ;
rdfs:comment "Corresponding author" ;
rdfs:range xsd:string .
ak_schema:germline_set_id a rdf:Property ;
rdfs:comment "Unique identifier of the GermlineSet within this file. Typically, generated by the repository hosting the record." ;
rdfs:range xsd:string .
ak_schema:allele_descriptions a rdf:Property ;
rdfs:comment "list of allele_descriptions in the germline set" ;
rdfs:range ak_schema:AlleleDescription .
ak_schema:ModelSpecification a rdfs:Class ;
rdfs:subClassOf ak_schema:PlanSpecification .
ak_schema:SequenceDelineationV a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:fwr_2_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:fwr_1_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:fwr_1_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:fwr_2_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:sequence_delineation_id a rdf:Property ;
rdfs:comment "Unique identifier of this SequenceDelineationV within the file. Typically, generated by the repository hosting the record." ;
rdfs:range xsd:string .
ak_schema:unaligned_sequence a rdf:Property ;
rdfs:comment "entire V-sequence covered by this delineation" ;
rdfs:range xsd:string .
ak_schema:alignment_labels a rdf:Property ;
rdfs:comment "One string for each codon in the aligned_sequence indicating the label of that codon according to the numbering of the delineation scheme if it provides one." ;
rdfs:range xsd:string .
ak_schema:fwr_3_start a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:aligned_sequence a rdf:Property ;
rdfs:comment "Aligned sequence if this delineation provides an alignment. An aligned sequence should always be provided for IMGT delineations." ;
rdfs:range xsd:string .
ak_schema:fwr_3_end a rdf:Property ;
rdfs:range xsd:integer .
ak_schema:delineation_scheme a rdf:Property ;
rdfs:comment "Name of the delineation scheme" ;
rdfs:range xsd:string .
ak_schema:UndocumentedAllele a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:allele_name a rdf:Property ;
rdfs:comment "Allele name as allocated by the inference pipeline" ;
rdfs:range xsd:string .
ak_schema:DataProcessing a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:data_processing_protocols a rdf:Property ;
rdfs:comment "General description of how QC is performed" ;
rdfs:range xsd:string .
ak_schema:software_versions a rdf:Property ;
rdfs:comment "Version number and / or date, include company pipelines" ;
rdfs:range xsd:string .
ak_schema:analysis_provenance_id a rdf:Property ;
rdfs:comment "Identifier for machine-readable PROV model of analysis provenance" ;
rdfs:range xsd:string .
ak_schema:germline_database a rdf:Property ;
rdfs:comment "Source of germline V(D)J genes with version number or date accessed." ;
rdfs:range xsd:string .
ak_schema:data_processing_files a rdf:Property ;
rdfs:comment "Array of file names for data produced by this data processing." ;
rdfs:range xsd:string .
ak_schema:paired_reads_assembly a rdf:Property ;
rdfs:comment "How paired end reads were assembled into a single receptor sequence" ;
rdfs:range xsd:string .
ak_schema:quality_thresholds a rdf:Property ;
rdfs:comment "How/if sequences were removed from (4) based on base quality scores" ;
rdfs:range xsd:string .
ak_schema:primary_annotation a rdf:Property ;
rdfs:comment "If true, indicates this is the primary or default data processing for the repertoire and its rearrangements. If false, indicates this is a secondary or additional data processing." ;
rdfs:range xsd:boolean .
ak_schema:primer_match_cutoffs a rdf:Property ;
rdfs:comment "How primers were identified in the sequences, were they removed/masked/etc?" ;
rdfs:range xsd:string .
ak_schema:collapsing_method a rdf:Property ;
rdfs:comment "The method used for combining multiple sequences from (4) into a single sequence in (5)" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:subClassOf .
ak_schema:Rearrangement a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:quality a rdf:Property ;
rdfs:comment "The Sanger/Phred quality scores for assessment of sequence quality. Phred quality scores from 0 to 93 are encoded using ASCII 33 to 126 (Used by Illumina from v1.8.)" ;
rdfs:range xsd:string .
ak_schema:v_sequence_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the v_sequence_alignment field." ;
rdfs:range xsd:string .
ak_schema:p_5_j_length a rdf:Property ;
rdfs:comment "Number of palindromic nucleotides 5' of the J gene alignment." ;
rdfs:range xsd:integer .
ak_schema:fwr_4_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the fwr4 field." ;
rdfs:range xsd:string .
ak_schema:n_1_length a rdf:Property ;
rdfs:comment "Number of untemplated nucleotides 5' of the first or only D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:d_2_identity a rdf:Property ;
rdfs:comment "Fractional identity for the second D gene alignment." ;
rdfs:range xsd:float .
ak_schema:c_germline_end a rdf:Property ;
rdfs:comment "Alignment end position in the C gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:fwr_2 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned FWR2 region." ;
rdfs:range xsd:string .
ak_schema:c_alignment_end a rdf:Property ;
rdfs:comment "End position of the C gene alignment in both the sequence_alignment and germline_alignment fields (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:c_score a rdf:Property ;
rdfs:comment "Alignment score for the C gene alignment." ;
rdfs:range xsd:float .
ak_schema:j_cigar a rdf:Property ;
rdfs:comment "CIGAR string for the J gene alignment." ;
rdfs:range xsd:string .
ak_schema:d_2_germline_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the d2_germline_alignment field." ;
rdfs:range xsd:string .
ak_schema:j_score a rdf:Property ;
rdfs:comment "Alignment score for the J gene alignment." ;
rdfs:range xsd:float .
ak_schema:d_2_call a rdf:Property ;
rdfs:comment "Second D gene with allele. If referring to a known reference sequence in a database the relevant gene/allele nomenclature should be followed (e.g., IGHD3-10*01 if using IMGT/GENE-DB)." ;
rdfs:range xsd:string .
ak_schema:c_identity a rdf:Property ;
rdfs:comment "Fractional identity for the C gene alignment." ;
rdfs:range xsd:float .
ak_schema:v_germline_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the v_germline_alignment field." ;
rdfs:range xsd:string .
ak_schema:d_2_sequence_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the d2_sequence_alignment field." ;
rdfs:range xsd:string .
ak_schema:j_germline_end a rdf:Property ;
rdfs:comment "Alignment end position in the J gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:j_sequence_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the j_sequence_alignment field." ;
rdfs:range xsd:string .
ak_schema:d_germline_end a rdf:Property ;
rdfs:comment "Alignment end position in the D gene reference sequence for the first or only D gene (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:fwr_1 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned FWR1 region." ;
rdfs:range xsd:string .
ak_schema:d_2_alignment_end a rdf:Property ;
rdfs:comment "End position of the second D gene alignment in both the sequence_alignment and germline_alignment fields (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:cdr_3 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned CDR3 region." ;
rdfs:range xsd:string .
ak_schema:d_support a rdf:Property ;
rdfs:comment "D gene alignment E-value, p-value, likelihood, probability or other similar measure of support for the first or only D gene as defined by the alignment tool." ;
rdfs:range xsd:float .
ak_schema:c_cigar a rdf:Property ;
rdfs:comment "CIGAR string for the C gene alignment." ;
rdfs:range xsd:string .
ak_schema:np_3 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the combined N/P region between the second D gene and J gene alignments." ;
rdfs:range xsd:string .
ak_schema:p_3_d_length a rdf:Property ;
rdfs:comment "Number of palindromic nucleotides 3' of the first or only D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:np_1 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the combined N/P region between the V gene and first D gene alignment or between the V gene and J gene alignments." ;
rdfs:range xsd:string .
ak_schema:d_sequence_alignment a rdf:Property ;
rdfs:comment "Aligned portion of query sequence assigned to the first or only D gene, including any indel corrections or numbering spacers." ;
rdfs:range xsd:string .
ak_schema:consensus_count a rdf:Property ;
rdfs:comment "Number of reads contributing to the UMI consensus or contig assembly for this sequence. For example, the sum of the number of reads for all UMIs that contribute to the query sequence." ;
rdfs:range xsd:integer .
ak_schema:p_3_v_length a rdf:Property ;
rdfs:comment "Number of palindromic nucleotides 3' of the V gene alignment." ;
rdfs:range xsd:integer .
ak_schema:c_germline_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the c_germline_aligment field." ;
rdfs:range xsd:string .
ak_schema:cdr_1 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned CDR1 region." ;
rdfs:range xsd:string .
ak_schema:c_support a rdf:Property ;
rdfs:comment "C gene alignment E-value, p-value, likelihood, probability or other similar measure of support for the C gene assignment as defined by the alignment tool." ;
rdfs:range xsd:float .
ak_schema:c_sequence_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the c_sequence_alignment field." ;
rdfs:range xsd:string .
ak_schema:v_sequence_end a rdf:Property ;
rdfs:comment "End position of the V gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:fwr_3 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned FWR3 region." ;
rdfs:range xsd:string .
ak_schema:fwr_2_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the fwr2 field." ;
rdfs:range xsd:string .
ak_schema:j_support a rdf:Property ;
rdfs:comment "J gene alignment E-value, p-value, likelihood, probability or other similar measure of support for the J gene assignment as defined by the alignment tool." ;
rdfs:range xsd:float .
ak_schema:j_sequence_end a rdf:Property ;
rdfs:comment "End position of the J gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:d_2_alignment_start a rdf:Property ;
rdfs:comment "Start position of the second D gene alignment in both the sequence_alignment and germline_alignment fields (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_identity a rdf:Property ;
rdfs:comment "Fractional identity for the V gene alignment." ;
rdfs:range xsd:float .
ak_schema:p_5_d_2_length a rdf:Property ;
rdfs:comment "Number of palindromic nucleotides 5' of the second D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:d_2_score a rdf:Property ;
rdfs:comment "Alignment score for the second D gene alignment." ;
rdfs:range xsd:float .
ak_schema:j_germline_alignment a rdf:Property ;
rdfs:comment "Aligned J gene germline sequence spanning the same region as the j_sequence_alignment field and including the same set of corrections and spacers (if any)." ;
rdfs:range xsd:string .
ak_schema:n_2_length a rdf:Property ;
rdfs:comment "Number of untemplated nucleotides 3' of the first or only D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:v_frameshift a rdf:Property ;
rdfs:comment "True if the V gene in the query nucleotide sequence contains a translational frameshift relative to the frame of the V gene reference sequence." ;
rdfs:range xsd:boolean .
ak_schema:cdr_2 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned CDR2 region." ;
rdfs:range xsd:string .
ak_schema:c_germline_start a rdf:Property ;
rdfs:comment "Alignment start position in the C gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_cigar a rdf:Property ;
rdfs:comment "CIGAR string for the V gene alignment." ;
rdfs:range xsd:string .
ak_schema:np_2_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the np2 field." ;
rdfs:range xsd:string .
ak_schema:d_sequence_start a rdf:Property ;
rdfs:comment "Start position of the first or only D gene in the query sequence. (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_support a rdf:Property ;
rdfs:comment "V gene alignment E-value, p-value, likelihood, probability or other similar measure of support for the V gene assignment as defined by the alignment tool." ;
rdfs:range xsd:float .
ak_schema:productive a rdf:Property ;
rdfs:comment "True if the V(D)J sequence is predicted to be productive." ;
rdfs:range xsd:boolean .
ak_schema:p_3_d_2_length a rdf:Property ;
rdfs:comment "Number of palindromic nucleotides 3' of the second D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:fwr_4_end a rdf:Property ;
rdfs:comment "FWR4 end position in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:np_2_length a rdf:Property ;
rdfs:comment "Number of nucleotides between either the first D gene and J gene alignments or the first D gene and second D gene alignments." ;
rdfs:range xsd:integer .
ak_schema:vj_in_frame a rdf:Property ;
rdfs:comment "True if the V and J gene alignments are in-frame." ;
rdfs:range xsd:boolean .
ak_schema:j_sequence_alignment a rdf:Property ;
rdfs:comment "Aligned portion of query sequence assigned to the J gene, including any indel corrections or numbering spacers." ;
rdfs:range xsd:string .
ak_schema:fwr_3_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the fwr3 field." ;
rdfs:range xsd:string .
ak_schema:np_1_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the np1 field." ;
rdfs:range xsd:string .
ak_schema:np_2 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the combined N/P region between either the first D gene and J gene alignments or the first D gene and second D gene alignments." ;
rdfs:range xsd:string .
ak_schema:fwr_4 a rdf:Property ;
rdfs:comment "Nucleotide sequence of the aligned FWR4 region." ;
rdfs:range xsd:string .
ak_schema:d_cigar a rdf:Property ;
rdfs:comment "CIGAR string for the first or only D gene alignment." ;
rdfs:range xsd:string .
ak_schema:d_2_support a rdf:Property ;
rdfs:comment "D gene alignment E-value, p-value, likelihood, probability or other similar measure of support for the second D gene as defined by the alignment tool." ;
rdfs:range xsd:float .
ak_schema:j_germline_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the j_germline_alignment field." ;
rdfs:range xsd:string .
ak_schema:d_germline_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the d_germline_alignment field." ;
rdfs:range xsd:string .
ak_schema:d_germline_start a rdf:Property ;
rdfs:comment "Alignment start position in the D gene reference sequence for the first or only D gene (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:d_score a rdf:Property ;
rdfs:comment "Alignment score for the first or only D gene alignment." ;
rdfs:range xsd:float .
ak_schema:quality_alignment a rdf:Property ;
rdfs:comment "Sanger/Phred quality scores for assessment of sequence_alignment quality. Phred quality scores from 0 to 93 are encoded using ASCII 33 to 126 (Used by Illumina from v1.8.)" ;
rdfs:range xsd:string .
ak_schema:np_3_length a rdf:Property ;
rdfs:comment "Number of nucleotides between the second D gene and J gene alignments." ;
rdfs:range xsd:integer .
ak_schema:j_sequence_start a rdf:Property ;
rdfs:comment "Start position of the J gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_sequence_alignment a rdf:Property ;
rdfs:comment "Aligned portion of query sequence assigned to the V gene, including any indel corrections or numbering spacers." ;
rdfs:range xsd:string .
ak_schema:d_sequence_end a rdf:Property ;
rdfs:comment "End position of the first or only D gene in the query sequence. (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:j_frameshift a rdf:Property ;
rdfs:comment "True if the J gene in the query nucleotide sequence contains a translational frameshift relative to the frame of the J gene reference sequence." ;
rdfs:range xsd:boolean .
ak_schema:stop_codon a rdf:Property ;
rdfs:comment "True if the aligned sequence contains a stop codon." ;
rdfs:range xsd:boolean .
ak_schema:fwr_1_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the fwr1 field." ;
rdfs:range xsd:string .
ak_schema:v_sequence_start a rdf:Property ;
rdfs:comment "Start position of the V gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_germline_start a rdf:Property ;
rdfs:comment "Alignment start position in the V gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:d_2_germline_alignment a rdf:Property ;
rdfs:comment "Aligned D gene germline sequence spanning the same region as the d2_sequence_alignment field and including the same set of corrections and spacers (if any)." ;
rdfs:range xsd:string .
ak_schema:d_2_frame a rdf:Property ;
rdfs:comment "Numerical reading frame (1, 2, 3) of the second D gene in the query nucleotide sequence, where frame 1 is relative to the first codon of D gene reference sequence." ;
rdfs:range xsd:integer .
ak_schema:d_identity a rdf:Property ;
rdfs:comment "Fractional identity for the first or only D gene alignment." ;
rdfs:range xsd:float .
ak_schema:c_germline_alignment a rdf:Property ;
rdfs:comment "Aligned constant region germline sequence spanning the same region as the c_sequence_alignment field and including the same set of corrections and spacers (if any)." ;
rdfs:range xsd:string .
ak_schema:d_2_cigar a rdf:Property ;
rdfs:comment "CIGAR string for the second D gene alignment." ;
rdfs:range xsd:string .
ak_schema:d_sequence_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the d_sequence_alignment field." ;
rdfs:range xsd:string .
ak_schema:np_3_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the np3 field." ;
rdfs:range xsd:string .
ak_schema:j_identity a rdf:Property ;
rdfs:comment "Fractional identity for the J gene alignment." ;
rdfs:range xsd:float .
ak_schema:v_score a rdf:Property ;
rdfs:comment "Alignment score for the V gene." ;
rdfs:range xsd:float .
ak_schema:d_2_sequence_start a rdf:Property ;
rdfs:comment "Start position of the second D gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:d_2_germline_start a rdf:Property ;
rdfs:comment "Alignment start position in the second D gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:c_sequence_end a rdf:Property ;
rdfs:comment "End position of the C gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:d_2_germline_end a rdf:Property ;
rdfs:comment "Alignment end position in the second D gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_germline_alignment a rdf:Property ;
rdfs:comment "Aligned V gene germline sequence spanning the same region as the v_sequence_alignment field and including the same set of corrections and spacers (if any)." ;
rdfs:range xsd:string .
ak_schema:np_1_length a rdf:Property ;
rdfs:comment "Number of nucleotides between the V gene and first D gene alignments or between the V gene and J gene alignments." ;
rdfs:range xsd:integer .
ak_schema:d_2_sequence_end a rdf:Property ;
rdfs:comment "End position of the second D gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:duplicate_count a rdf:Property ;
rdfs:comment "Copy number or number of duplicate observations for the query sequence. For example, the number of identical reads observed for this sequence." ;
rdfs:range xsd:integer .
ak_schema:d_germline_alignment a rdf:Property ;
rdfs:comment "Aligned D gene germline sequence spanning the same region as the d_sequence_alignment field and including the same set of corrections and spacers (if any)." ;
rdfs:range xsd:string .
ak_schema:c_sequence_alignment a rdf:Property ;
rdfs:comment "Aligned portion of query sequence assigned to the constant region, including any indel corrections or numbering spacers." ;
rdfs:range xsd:string .
ak_schema:c_alignment_start a rdf:Property ;
rdfs:comment "Start position of the C gene alignment in both the sequence_alignment and germline_alignment fields (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:v_germline_end a rdf:Property ;
rdfs:comment "Alignment end position in the V gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:d_2_sequence_alignment a rdf:Property ;
rdfs:comment "Aligned portion of query sequence assigned to the second D gene, including any indel corrections or numbering spacers." ;
rdfs:range xsd:string .
ak_schema:d_frame a rdf:Property ;
rdfs:comment "Numerical reading frame (1, 2, 3) of the first or only D gene in the query nucleotide sequence, where frame 1 is relative to the first codon of D gene reference sequence." ;
rdfs:range xsd:integer .
ak_schema:fwr_4_start a rdf:Property ;
rdfs:comment "FWR4 start position in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:n_3_length a rdf:Property ;
rdfs:comment "Number of untemplated nucleotides 3' of the second D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:p_5_d_length a rdf:Property ;
rdfs:comment "Number of palindromic nucleotides 5' of the first or only D gene alignment." ;
rdfs:range xsd:integer .
ak_schema:j_germline_start a rdf:Property ;
rdfs:comment "Alignment start position in the J gene reference sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:sequence_alignment_aa a rdf:Property ;
rdfs:comment "Amino acid translation of the aligned query sequence." ;
rdfs:range xsd:string .
ak_schema:c_sequence_start a rdf:Property ;
rdfs:comment "Start position of the C gene in the query sequence (1-based closed interval)." ;
rdfs:range xsd:integer .
ak_schema:CellProcessing a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:CellExpression a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:property_value a rdf:Property ;
rdfs:comment "Level at which the property was observed in the experiment (non-normalized)." ;
rdfs:range xsd:float .
ak_schema:property a rdf:Property ;
rdfs:comment "Name of the property observed, typically a gene or antibody identifier (and label) from a canonical resource such as Ensembl (e.g. ENSG00000275747, IGHV3-79) or Antibody Registry (ABREG:1236456, Purified anti-mouse/rat/human CD27 antibody)." ;
rdfs:range ak_schema:PropertyOntology .
ak_schema:expression_id a rdf:Property ;
rdfs:comment "Identifier of this expression property measurement." ;
rdfs:range xsd:string .
ak_schema:disease a rdf:Property ;
rdfs:comment "The disease relevant to an immune exposure" ;
rdfs:range ak_schema:DiseaseOntology .
ak_schema:disease_severity a rdf:Property ;
rdfs:comment "The severity of the disease relevant to an immune exposure" ;
rdfs:range xsd:string .
a rdfs:Class ;
rdfs:comment "A participant in an investigation." ;
rdfs:subClassOf ak_schema:NamedThing .
a rdf:Property ;
rdfs:comment "The biological sex of a participant" , "The phenotypic sex of a participant" ;
rdfs:range ak_schema:BiologicalSexOntology , ak_schema:PhenotypicSexOntology ;
a rdf:Property ;
rdfs:comment "The biological sex of a participant" , "The phenotypic sex of a participant" ;
rdfs:range ak_schema:BiologicalSexOntology , ak_schema:PhenotypicSexOntology .
ak_schema:strain a rdf:Property ;
rdfs:comment "The strain of the participant (non-human study participants)" ;
rdfs:range ak_schema:StrainEnum .
a rdf:Property ;
rdfs:comment "The study arm that a participant is a member of" ;
rdfs:range .
ak_schema:age a rdf:Property ;
rdfs:comment "The age of a participant relative to age_event" ;
rdfs:range xsd:string .
ak_schema:RepertoireGroup a rdfs:Class ;
rdfs:subClassOf ak_schema:AirrStandards .
ak_schema:repertoire_group_id a rdf:Property ;
rdfs:comment "Identifier for this repertoire collection" ;
rdfs:range xsd:string .
ak_schema:repertoire_group_name a rdf:Property ;
rdfs:comment "Short display name for this repertoire collection" ;
rdfs:range xsd:string .
ak_schema:repertoire_group_description a rdf:Property ;
rdfs:comment "Repertoire collection description" ;
rdfs:range xsd:string .
ak_schema:repertoires a rdf:Property ;
rdfs:comment "List of repertoires in this collection with an associated description and time point designation" ;
rdfs:range ak_schema:RepertoireGroupDetail .
ak_schema:exclusion_criteria a rdf:Property ;
rdfs:comment "Participants are excluded from an investigation if they meet this criteria" ;
rdfs:range xsd:string .
ak_schema:inclusion_criteria a rdf:Property ;
rdfs:comment "Participants in an investigation must meet this criteria" ;
rdfs:range xsd:string .
ak_schema:isotype a rdf:Property ;
rdfs:comment "The isotype of the chain" ;
rdfs:range xsd:string .
a rdfs:Datatype ;
rdfs:comment "A URI or CURIE that represents an object in the model." .
a rdfs:Datatype ;
rdfs:comment "A URI, CURIE or BNODE that represents a node in a model." .
a rdfs:Datatype ;
rdfs:comment "Either a date or a datetime" .
ak_schema:ReceptorVariableDomain2LocusEnum a rdfs:Class .
ak_schema:ReceptorVariableDomain2LocusEnum.IGI a ak_schema:ReceptorVariableDomain2LocusEnum .
ak_schema:ReceptorVariableDomain2LocusEnum.IGK a ak_schema:ReceptorVariableDomain2LocusEnum .
ak_schema:ReceptorVariableDomain2LocusEnum.IGL a ak_schema:ReceptorVariableDomain2LocusEnum .
ak_schema:ReceptorVariableDomain2LocusEnum.TRA a ak_schema:ReceptorVariableDomain2LocusEnum .
ak_schema:ReceptorVariableDomain2LocusEnum.TRG a ak_schema:ReceptorVariableDomain2LocusEnum .
ak_schema:PhenotypicSexOntology a rdfs:Class .
a ak_schema:PhenotypicSexOntology .
a ak_schema:PhenotypicSexOntology .
ak_schema:PhenotypicSexOntology.INTERSEX a ak_schema:PhenotypicSexOntology .
a ak_schema:PhenotypicSexOntology .
ak_schema:PhenotypicSexOntology.NOT_COLLECTED a ak_schema:PhenotypicSexOntology .
ak_schema:PhenotypicSexOntology.POOLED a ak_schema:PhenotypicSexOntology .
ak_schema:ReceptorTypeEnum a rdfs:Class .
ak_schema:ReceptorTypeEnum.IG a ak_schema:ReceptorTypeEnum .
ak_schema:ReceptorTypeEnum.TCR a ak_schema:ReceptorTypeEnum .
ak_schema:RaceOntology a rdfs:Class .
ak_schema:RaceOntology.AFRICAN_AMERICAN a ak_schema:RaceOntology .
a ak_schema:RaceOntology .
a ak_schema:RaceOntology .
ak_schema:RaceOntology.ASIAN_OR_PACIFIC_ISLANDER a ak_schema:RaceOntology .
ak_schema:RaceOntology.BLACK a ak_schema:RaceOntology .
a ak_schema:RaceOntology .
ak_schema:RaceOntology.BRAZILIAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.CHINESE a ak_schema:RaceOntology .
ak_schema:RaceOntology.GERMAN_EAST_INDIAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.HISPANIC a ak_schema:RaceOntology .
ak_schema:RaceOntology.HISPANIC_OR_LATINO a ak_schema:RaceOntology .
ak_schema:RaceOntology.INDIAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.INDIAN_IRISH_FRENCH_POLISH a ak_schema:RaceOntology .
ak_schema:RaceOntology.KOREAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.MIDDLE_EASTERN a ak_schema:RaceOntology .
ak_schema:RaceOntology.MIDDLE_EASTERN_EUROPEAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.MIXED a ak_schema:RaceOntology .
ak_schema:RaceOntology.MIXED_RACIAL_GROUP a ak_schema:RaceOntology .
ak_schema:RaceOntology.NR a ak_schema:RaceOntology .
ak_schema:RaceOntology.NATIVE a ak_schema:RaceOntology .
ak_schema:RaceOntology.NATIVE_AMERICAN_OR_ALASKA_NATIVE a ak_schema:RaceOntology .
a ak_schema:RaceOntology .
a ak_schema:RaceOntology .
ak_schema:RaceOntology.UNKNOWN_RACIAL_GROUP a ak_schema:RaceOntology .
a ak_schema:RaceOntology .
ak_schema:RaceOntology.WHITE_ASIAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.WHITE_ASIAN_BLACK a ak_schema:RaceOntology .
ak_schema:RaceOntology.WHITE_CAUCASIAN a ak_schema:RaceOntology .
ak_schema:RaceOntology.WHITE_BRITISH a ak_schema:RaceOntology .
ak_schema:RaceOntology.RACE_NOT_SPECIFIED a ak_schema:RaceOntology .
ak_schema:RaceOntology.RACE_UNKNOWN a ak_schema:RaceOntology .
ak_schema:PairedReadDirectionEnum a rdfs:Class .
ak_schema:PairedReadDirectionEnum.FORWARD a ak_schema:PairedReadDirectionEnum .
ak_schema:PairedReadDirectionEnum.MIXED a ak_schema:PairedReadDirectionEnum .
ak_schema:PairedReadDirectionEnum.REVERSE a ak_schema:PairedReadDirectionEnum .
ak_schema:ExposureMaterialOntology a rdfs:Class .
ak_schema:SexEnum a rdfs:Class .
ak_schema:SexEnum.FEMALE a ak_schema:SexEnum .
ak_schema:SexEnum.HERMAPHRODITE a ak_schema:SexEnum .
ak_schema:SexEnum.INTERSEX a ak_schema:SexEnum .
ak_schema:SexEnum.MALE a ak_schema:SexEnum .
ak_schema:SexEnum.POOLED a ak_schema:SexEnum .
ak_schema:AntigenTypeEnum a rdfs:Class .
ak_schema:AntigenTypeEnum.NON_PEPTIDIC a ak_schema:AntigenTypeEnum .
ak_schema:AntigenTypeEnum.PEPTIDE a ak_schema:AntigenTypeEnum .
ak_schema:AntigenTypeEnum.PROTEIN a ak_schema:AntigenTypeEnum .
ak_schema:DerivationEnum a rdfs:Class .
ak_schema:DerivationEnum.DNA a ak_schema:DerivationEnum .
ak_schema:DerivationEnum.RNA a ak_schema:DerivationEnum .
ak_schema:BiologicalSexOntology a rdfs:Class .
ak_schema:JCodonFrameEnum a rdfs:Class .
ak_schema:JCodonFrameEnum.1 a ak_schema:JCodonFrameEnum .
ak_schema:JCodonFrameEnum.2 a ak_schema:JCodonFrameEnum .
ak_schema:JCodonFrameEnum.3 a ak_schema:JCodonFrameEnum .
ak_schema:StudyTypeOntology a rdfs:Class .
ak_schema:CellSubsetOntology a rdfs:Class .
ak_schema:PcrTargetLocusEnum a rdfs:Class .
ak_schema:PcrTargetLocusEnum.IGH a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.IGI a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.IGK a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.IGL a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.TRA a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.TRB a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.TRD a ak_schema:PcrTargetLocusEnum .
ak_schema:PcrTargetLocusEnum.TRG a ak_schema:PcrTargetLocusEnum .
ak_schema:MhcGene2Ontology a rdfs:Class .
ak_schema:ReadDirectionEnum a rdfs:Class .
ak_schema:ReadDirectionEnum.FORWARD a ak_schema:ReadDirectionEnum .
ak_schema:ReadDirectionEnum.MIXED a ak_schema:ReadDirectionEnum .
ak_schema:ReadDirectionEnum.REVERSE a ak_schema:ReadDirectionEnum .
ak_schema:ReactivityReadoutEnum a rdfs:Class .
ak_schema:ReactivityReadoutEnum.BINDING_STRENGTH a ak_schema:ReactivityReadoutEnum .
ak_schema:ReactivityReadoutEnum.CYTOKINE_RELEASE a ak_schema:ReactivityReadoutEnum .
ak_schema:ReactivityReadoutEnum.DISSOCIATION_CONSTANT_KD a ak_schema:ReactivityReadoutEnum .
ak_schema:ReactivityReadoutEnum.OFF_RATE a ak_schema:ReactivityReadoutEnum .
ak_schema:ReactivityReadoutEnum.ON_RATE a ak_schema:ReactivityReadoutEnum .
ak_schema:ReactivityReadoutEnum.PATHOGEN_INHIBITION a ak_schema:ReactivityReadoutEnum .
ak_schema:MhcClassEnum a rdfs:Class .
ak_schema:MhcClassEnum.MHC_I a ak_schema:MhcClassEnum .
ak_schema:MhcClassEnum.MHC_II a ak_schema:MhcClassEnum .
ak_schema:MhcClassEnum.MHC_NONCLASSICAL a ak_schema:MhcClassEnum .
ak_schema:SequenceTypeEnum a rdfs:Class .
ak_schema:SequenceTypeEnum.C a ak_schema:SequenceTypeEnum .
ak_schema:SequenceTypeEnum.D a ak_schema:SequenceTypeEnum .
ak_schema:SequenceTypeEnum.J a ak_schema:SequenceTypeEnum .
ak_schema:SequenceTypeEnum.V a ak_schema:SequenceTypeEnum .
ak_schema:LocusEnum a rdfs:Class .
ak_schema:LocusEnum.IGH a ak_schema:LocusEnum .
ak_schema:LocusEnum.IGI a ak_schema:LocusEnum .
ak_schema:LocusEnum.IGK a ak_schema:LocusEnum .
ak_schema:LocusEnum.IGL a ak_schema:LocusEnum .
ak_schema:LocusEnum.TRA a ak_schema:LocusEnum .
ak_schema:LocusEnum.TRB a ak_schema:LocusEnum .
ak_schema:LocusEnum.TRD a ak_schema:LocusEnum .
ak_schema:LocusEnum.TRG a ak_schema:LocusEnum .
ak_schema:CollectionTimePointRelativeUnitOntology a rdfs:Class .
ak_schema:TissueOntology a rdfs:Class .
ak_schema:ObservationTypeEnum a rdfs:Class .
ak_schema:ObservationTypeEnum.DIRECT_SEQUENCING a ak_schema:ObservationTypeEnum .
ak_schema:ObservationTypeEnum.INFERENCE_FROM_REPERTOIRE a ak_schema:ObservationTypeEnum .
ak_schema:ExpressionStudyMethodEnum a rdfs:Class .
ak_schema:ExpressionStudyMethodEnum.FLOW_CYTOMETRY a ak_schema:ExpressionStudyMethodEnum .
ak_schema:ExpressionStudyMethodEnum.SINGLE_CELL_TRANSCRIPTOME a ak_schema:ExpressionStudyMethodEnum .
ak_schema:StatusEnum a rdfs:Class .
ak_schema:StatusEnum.ACTIVE a ak_schema:StatusEnum .
ak_schema:StatusEnum.DRAFT a ak_schema:StatusEnum .
ak_schema:StatusEnum.RETIRED a ak_schema:StatusEnum .
ak_schema:StatusEnum.WITHDRAWN a ak_schema:StatusEnum .
ak_schema:PhysicalLinkageEnum a rdfs:Class .
ak_schema:PhysicalLinkageEnum.HETERO_HEAD_HEAD a ak_schema:PhysicalLinkageEnum .
ak_schema:PhysicalLinkageEnum.HETERO_PRELINKED a ak_schema:PhysicalLinkageEnum .
ak_schema:PhysicalLinkageEnum.HETERO_TAIL_HEAD a ak_schema:PhysicalLinkageEnum .
ak_schema:PhysicalLinkageEnum.NONE a ak_schema:PhysicalLinkageEnum .
ak_schema:TemplateClassEnum a rdfs:Class .
ak_schema:TemplateClassEnum.DNA a ak_schema:TemplateClassEnum .
ak_schema:TemplateClassEnum.RNA a ak_schema:TemplateClassEnum .
ak_schema:SpeciesOntology a rdfs:Class .
ak_schema:LifeEventProcessOntology a rdfs:Class .
ak_schema:MhcGene1Ontology a rdfs:Class .
ak_schema:KeywordsStudyEnum a rdfs:Class .
ak_schema:KeywordsStudyEnum.CONTAINS_IG a ak_schema:KeywordsStudyEnum .
ak_schema:KeywordsStudyEnum.CONTAINS_PAIRED_CHAIN a ak_schema:KeywordsStudyEnum .
ak_schema:KeywordsStudyEnum.CONTAINS_SCHEMA_CELL a ak_schema:KeywordsStudyEnum .
ak_schema:KeywordsStudyEnum.CONTAINS_SCHEMA_CLONE a ak_schema:KeywordsStudyEnum .
ak_schema:KeywordsStudyEnum.CONTAINS_SCHEMA_REARRANGEMENT a ak_schema:KeywordsStudyEnum .
ak_schema:KeywordsStudyEnum.CONTAINS_SCHEMA_RECEPTOR a ak_schema:KeywordsStudyEnum .
ak_schema:KeywordsStudyEnum.CONTAINS_TR a ak_schema:KeywordsStudyEnum .
ak_schema:InferenceTypeEnum a rdfs:Class .
ak_schema:InferenceTypeEnum.GENOMIC_AND_REARRANGED a ak_schema:InferenceTypeEnum .
ak_schema:InferenceTypeEnum.GENOMIC_ONLY a ak_schema:InferenceTypeEnum .
ak_schema:InferenceTypeEnum.REARRANGED_ONLY a ak_schema:InferenceTypeEnum .
ak_schema:ChainSimilarityTypeEnum a rdfs:Class .
ak_schema:ChainSimilarityTypeEnum.CDR_3_EXACT_AA_AND_VJ_MATCH a ak_schema:ChainSimilarityTypeEnum .
ak_schema:ChainSimilarityTypeEnum.CDR_3_EXACT_AA_MATCH a ak_schema:ChainSimilarityTypeEnum .
ak_schema:ChainSimilarityTypeEnum.CDR_3_EXACT_MATCH a ak_schema:ChainSimilarityTypeEnum .
ak_schema:ChainSimilarityTypeEnum.EXACT_AA_MATCH a ak_schema:ChainSimilarityTypeEnum .
ak_schema:ChainSimilarityTypeEnum.EXACT_MATCH a ak_schema:ChainSimilarityTypeEnum .
ak_schema:AntigenOntology a rdfs:Class .
ak_schema:EthnicityOntology a rdfs:Class .
ak_schema:EthnicityOntology.AFRICAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.AFRICAN_AMERICAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.ARAB a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.ARABIGAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.ASIAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.BLACK a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.BLACK_OR_BLACK_BRITISH_AFRICAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.CAUCASIAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.DECLINED a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.HAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.HISPANIC a ak_schema:EthnicityOntology .
a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.ITALIAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.LATIN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.NR a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.NON_HISPANIC a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.NON_HISPANIC_OR_LATINO a ak_schema:EthnicityOntology .
a ak_schema:EthnicityOntology .
a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.OTHER_NOT_STATED a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.SE_ASIAN a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.UNKNOWN_ETHNICITY a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.WHITE a ak_schema:EthnicityOntology .
ak_schema:EthnicityOntology.ETHNICITY_NOT_SPECIFIED a ak_schema:EthnicityOntology .
ak_schema:CurationalTagsEnum a rdfs:Class .
ak_schema:CurationalTagsEnum.LIKELY_FULL_LENGTH a ak_schema:CurationalTagsEnum .
ak_schema:CurationalTagsEnum.LIKELY_TRUNCATED a ak_schema:CurationalTagsEnum .
ak_schema:StrainEnum a rdfs:Class .
ak_schema:StrainEnum.1_D_2_BETA a ak_schema:StrainEnum .
ak_schema:StrainEnum.BALB_C_BY_J a ak_schema:StrainEnum .
ak_schema:StrainEnum.BALB_C a ak_schema:StrainEnum .
ak_schema:StrainEnum.C_57_BL_6 a ak_schema:StrainEnum .
ak_schema:StrainEnum.C_57_BL_6_J a ak_schema:StrainEnum .
ak_schema:StrainEnum.JHD_MRL_MP_J_FASLP a ak_schema:StrainEnum .
ak_schema:StrainEnum.LDLR a ak_schema:StrainEnum .
ak_schema:StrainEnum.PET_SHOP_MOUSE a ak_schema:StrainEnum .
ak_schema:LibraryGenerationMethodEnum a rdfs:Class .
ak_schema:LibraryGenerationMethodEnum.PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_RHP_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_OLIGO_D_T_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_OLIGO_D_T_TS_UMI_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_OLIGO_D_T_TS_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_SPECIFIC_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_SPECIFIC_TS a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_SPECIFIC_TS_UMI_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_SPECIFIC_TS_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_SPECIFIC_UMI_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.RT_SPECIFIC_UMI_TS_PCR a ak_schema:LibraryGenerationMethodEnum .
ak_schema:LibraryGenerationMethodEnum.OTHER a ak_schema:LibraryGenerationMethodEnum .
ak_schema:InferenceProcessEnum a rdfs:Class .
ak_schema:InferenceProcessEnum.GENOMIC_SEQUENCING a ak_schema:InferenceProcessEnum .
ak_schema:InferenceProcessEnum.REPERTOIRE_SEQUENCING a ak_schema:InferenceProcessEnum .
ak_schema:GeolocationOntology a rdfs:Class .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
a ak_schema:GeolocationOntology .
ak_schema:SpeciesSubgroupTypeEnum a rdfs:Class .
ak_schema:SpeciesSubgroupTypeEnum.BREED a ak_schema:SpeciesSubgroupTypeEnum .
ak_schema:SpeciesSubgroupTypeEnum.INBRED a ak_schema:SpeciesSubgroupTypeEnum .
ak_schema:SpeciesSubgroupTypeEnum.LOCATIONAL a ak_schema:SpeciesSubgroupTypeEnum .
ak_schema:SpeciesSubgroupTypeEnum.OUTBRED a ak_schema:SpeciesSubgroupTypeEnum .
ak_schema:SpeciesSubgroupTypeEnum.STRAIN a ak_schema:SpeciesSubgroupTypeEnum .
ak_schema:ReceptorVariableDomain1LocusEnum a rdfs:Class .
ak_schema:ReceptorVariableDomain1LocusEnum.IGH a ak_schema:ReceptorVariableDomain1LocusEnum .
ak_schema:ReceptorVariableDomain1LocusEnum.TRB a ak_schema:ReceptorVariableDomain1LocusEnum .
ak_schema:ReceptorVariableDomain1LocusEnum.TRD a ak_schema:ReceptorVariableDomain1LocusEnum .
ak_schema:TemplateAmountUnitOntology a rdfs:Class .
ak_schema:DiseaseOntology a rdfs:Class .
ak_schema:TimePointUnitOntology a rdfs:Class .
ak_schema:AntigenSourceSpeciesOntology a rdfs:Class .
ak_schema:ReactivityMethodEnum a rdfs:Class .
ak_schema:ReactivityMethodEnum.ELISA a ak_schema:ReactivityMethodEnum .
ak_schema:ReactivityMethodEnum.ITC a ak_schema:ReactivityMethodEnum .
ak_schema:ReactivityMethodEnum.SPR a ak_schema:ReactivityMethodEnum .
ak_schema:ReactivityMethodEnum.BIOLOGICAL_ACTIVITY a ak_schema:ReactivityMethodEnum .
ak_schema:ReactivityMethodEnum.CYTOMETRY a ak_schema:ReactivityMethodEnum .
ak_schema:DiseaseDiagnosisOntology a rdfs:Class .
ak_schema:StrandEnum a rdfs:Class .
ak_schema:StrandEnum.HYPHEN_MINUS a ak_schema:StrandEnum .
ak_schema:StrandEnum.PLUS_SIGN a ak_schema:StrandEnum .
ak_schema:AgeUnitOntology a rdfs:Class .
ak_schema:InvestigationTypeOntology a rdfs:Class .
ak_schema:FileTypeEnum a rdfs:Class .
ak_schema:FileTypeEnum.FASTA a ak_schema:FileTypeEnum .
ak_schema:FileTypeEnum.FASTQ a ak_schema:FileTypeEnum .
ak_schema:LigandTypeEnum a rdfs:Class .
ak_schema:LigandTypeEnum.MHC_NON_PEPTIDE a ak_schema:LigandTypeEnum .
ak_schema:LigandTypeEnum.MHC_PEPTIDE a ak_schema:LigandTypeEnum .
ak_schema:LigandTypeEnum.NON_PEPTIDIC a ak_schema:LigandTypeEnum .
ak_schema:LigandTypeEnum.PEPTIDE a ak_schema:LigandTypeEnum .
ak_schema:LigandTypeEnum.PROTEIN a ak_schema:LigandTypeEnum .
ak_schema:ChainTypeEnum a rdfs:Class .
ak_schema:ChainTypeEnum.IGH a ak_schema:ChainTypeEnum .
ak_schema:ChainTypeEnum.IGK a ak_schema:ChainTypeEnum .
ak_schema:ChainTypeEnum.IGL a ak_schema:ChainTypeEnum .
ak_schema:ChainTypeEnum.TRA a ak_schema:ChainTypeEnum .
ak_schema:ChainTypeEnum.TRB a ak_schema:ChainTypeEnum .
ak_schema:ChainTypeEnum.TRD a ak_schema:ChainTypeEnum .
ak_schema:ChainTypeEnum.TRG a ak_schema:ChainTypeEnum .
ak_schema:PropertyOntology a rdfs:Class .
ak_schema:CompleteSequencesEnum a rdfs:Class .
ak_schema:CompleteSequencesEnum.COMPLETE a ak_schema:CompleteSequencesEnum .
ak_schema:CompleteSequencesEnum.COMPLETE_UNTEMPLATED a ak_schema:CompleteSequencesEnum .
ak_schema:CompleteSequencesEnum.MIXED a ak_schema:CompleteSequencesEnum .
ak_schema:CompleteSequencesEnum.PARTIAL a ak_schema:CompleteSequencesEnum .
ak_schema:CellSpeciesOntology a rdfs:Class .
ak_schema:GeneOntology a rdfs:Class .
ak_schema:DiseaseStageOntology a rdfs:Class .
a ak_schema:DiseaseStageOntology .
a ak_schema:DiseaseStageOntology .
a ak_schema:DiseaseStageOntology .
a ak_schema:DiseaseStageOntology .
a ak_schema:DiseaseStageOntology .